-
1
-
-
80055101101
-
Temporal dissection of tumorigenesis in primary cancers
-
Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, et al. (2011) Temporal dissection of tumorigenesis in primary cancers. Cancer Discovery 1: 137-143.
-
(2011)
Cancer Discovery
, vol.1
, pp. 137-143
-
-
Durinck, S.1
Ho, C.2
Wang, N.J.3
Liao, W.4
Jakkula, L.R.5
-
2
-
-
84863393305
-
Estimation of rearrangement phylogeny for cancer genomes
-
Greenman C, Pleasance E, Newman S, Yang F, Fu B, et al. (2012) Estimation of rearrangement phylogeny for cancer genomes. Genome Res 22: 346-361.
-
(2012)
Genome Res
, vol.22
, pp. 346-361
-
-
Greenman, C.1
Pleasance, E.2
Newman, S.3
Yang, F.4
Fu, B.5
-
3
-
-
36248962105
-
The Genomic Landscapes of Human Breast and Colorectal Cancers
-
Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, et al. (2007). The Genomic Landscapes of Human Breast and Colorectal Cancers. Science 318, 1108-1113.
-
(2007)
Science
, vol.318
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
-
4
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
Greenman C, Stephens P, Smith R, Dalgliesh GL, Hunter C, et al. (2007) Patterns of somatic mutation in human cancer genomes. Nature 446: 153-158.
-
(2007)
Nature
, vol.446
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
Dalgliesh, G.L.4
Hunter, C.5
-
5
-
-
0037059043
-
The role of chromosomal instability in tumor initiation
-
Nowak MA, Komarova NL, Sengupta A, Jallepalli PV, Shih I-M, et al. (2002) The role of chromosomal instability in tumor initiation. Proc Natl Acad Sci USA 99: 16226-16231.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16226-16231
-
-
Nowak, M.A.1
Komarova, N.L.2
Sengupta, A.3
Jallepalli, P.V.4
Shih, I.-M.5
-
6
-
-
0141576687
-
The significance of unstable chromosomes in colorectal cancer
-
Rajagopalan H, Nowak MA, Vogelstein B, Lengauer C, (2003) The significance of unstable chromosomes in colorectal cancer. Nat Rev Cancer 3: 695-701.
-
(2003)
Nat Rev Cancer
, vol.3
, pp. 695-701
-
-
Rajagopalan, H.1
Nowak, M.A.2
Vogelstein, B.3
Lengauer, C.4
-
7
-
-
0029902171
-
Primary vs. secondary neoplasia-associated chromosomal abnormalities - balanced rearrangements vs. genomic imbalances?
-
Johansson B, Mertens F, Mitelman F, (1996) Primary vs. secondary neoplasia-associated chromosomal abnormalities- balanced rearrangements vs. genomic imbalances? Genes Chromosomes Cancer 16: 155-163.
-
(1996)
Genes Chromosomes Cancer
, vol.16
, pp. 155-163
-
-
Johansson, B.1
Mertens, F.2
Mitelman, F.3
-
9
-
-
4444345401
-
In situ analyses of genome instability in breast cancer
-
Chin K, de Solorzano CO, Knowles D, Jones A, Chou W, et al. (2004) In situ analyses of genome instability in breast cancer. Nat Genet 36: 984-988.
-
(2004)
Nat Genet
, vol.36
, pp. 984-988
-
-
Chin, K.1
de Solorzano, C.O.2
Knowles, D.3
Jones, A.4
Chou, W.5
-
10
-
-
78650959663
-
Massive genomic rearrangement acquired in a single catastrophic event during cancer development
-
Stephens PJ, Greenman CD, Fu B, Yang F, Bignell GR, et al. (2011) Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell 144: 27-40.
-
(2011)
Cell
, vol.144
, pp. 27-40
-
-
Stephens, P.J.1
Greenman, C.D.2
Fu, B.3
Yang, F.4
Bignell, G.R.5
-
11
-
-
0031739560
-
Characterization of paired tumor and non-tumor cell lines established from patients with breast cancer
-
Gazdar AF, Kurvari V, Virmani A, Gollahon L, Sakaguchi M, et al. (1998) Characterization of paired tumor and non-tumor cell lines established from patients with breast cancer. Int J Cancer 78: 766-774.
-
(1998)
Int J Cancer
, vol.78
, pp. 766-774
-
-
Gazdar, A.F.1
Kurvari, V.2
Virmani, A.3
Gollahon, L.4
Sakaguchi, M.5
-
12
-
-
44349125900
-
Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes
-
Howarth KD, Blood KA, Ng BL, Beavis JC, Chua Y, et al. (2008) Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes. Oncogene 27: 3345.
-
(2008)
Oncogene
, vol.27
, pp. 3345
-
-
Howarth, K.D.1
Blood, K.A.2
Ng, B.L.3
Beavis, J.C.4
Chua, Y.5
-
13
-
-
79953314970
-
Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles
-
Howarth KD, Pole JC, Beavis JC, Batty EM, Newman S, et al. (2011) Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles. Genome Res 21: 525-534.
-
(2011)
Genome Res
, vol.21
, pp. 525-534
-
-
Howarth, K.D.1
Pole, J.C.2
Beavis, J.C.3
Batty, E.M.4
Newman, S.5
-
14
-
-
72949119310
-
Complex landscapes of somatic rearrangement in human breast cancer genomes
-
Stephens PJ, McBride DJ, Lin M-L, Varela I, Pleasance ED, et al. (2009) Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature 462: 1005-1010.
-
(2009)
Nature
, vol.462
, pp. 1005-1010
-
-
Stephens, P.J.1
McBride, D.J.2
Lin, M.-L.3
Varela, I.4
Pleasance, E.D.5
-
15
-
-
84856091317
-
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer
-
Robinson DR, Kalyana-Sundaram S, Wu Y-M, Shankar S, Cao X, et al. (2011) Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer. Nat Med 17: 1646-51.
-
(2011)
Nat Med
, vol.17
, pp. 1646-1651
-
-
Robinson, D.R.1
Kalyana-Sundaram, S.2
Wu, Y.-M.3
Shankar, S.4
Cao, X.5
-
16
-
-
0023929657
-
Existence of two distinct processes of chromosomal evolution in near-diploid colorectal tumors
-
Muleris M, Salmon RJ, Dutrillaux B, (1988) Existence of two distinct processes of chromosomal evolution in near-diploid colorectal tumors. Cancer Genet Cytogenet 32: 43-50.
-
(1988)
Cancer Genet Cytogenet
, vol.32
, pp. 43-50
-
-
Muleris, M.1
Salmon, R.J.2
Dutrillaux, B.3
-
17
-
-
0026329756
-
Breast cancer genetic evolution: I. Data from cytogenetics and DNA content
-
Dutrillaux B, Gerbault-Seureau M, Remvikos Y, Zafrani B, Prieur M, (1991) Breast cancer genetic evolution: I. Data from cytogenetics and DNA content. Breast Cancer Res Treat 19: 245-55.
-
(1991)
Breast Cancer Res Treat
, vol.19
, pp. 245-255
-
-
Dutrillaux, B.1
Gerbault-Seureau, M.2
Remvikos, Y.3
Zafrani, B.4
Prieur, M.5
-
18
-
-
84860782006
-
Absolute quantification of somatic DNA alterations in human cancer
-
Carter SL, Cibulskis K, Helman E, McKenna A, Shen H, et al. (2012) Absolute quantification of somatic DNA alterations in human cancer. Nat Biotechnol. 30: 413-21.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 413-421
-
-
Carter, S.L.1
Cibulskis, K.2
Helman, E.3
McKenna, A.4
Shen, H.5
-
19
-
-
75549087826
-
COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer
-
Forbes SA, Tang G, Bindal N, Bamford S, Dawson E, et al. (2010) COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer. Nucleic Acids Res 38: D652-657.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Forbes, S.A.1
Tang, G.2
Bindal, N.3
Bamford, S.4
Dawson, E.5
-
20
-
-
77249123407
-
Signatures of mutation and selection in the cancer genome
-
Bignell GR, Greenman CD, Davies H, Butler AP, Edkins S, et al. (2010) Signatures of mutation and selection in the cancer genome. Nature 463: 893-898.
-
(2010)
Nature
, vol.463
, pp. 893-898
-
-
Bignell, G.R.1
Greenman, C.D.2
Davies, H.3
Butler, A.P.4
Edkins, S.5
-
21
-
-
0035956878
-
Mechanisms underlying losses of heterozygosity in human colorectal Cancers
-
Thiagalingam S, Laken S, Willson JK, Markowitz SD, Kinzler KW, et al. (2001). Mechanisms underlying losses of heterozygosity in human colorectal Cancers. Proc. Natl. Acad. Sci. U.S.A 98, 2698-2702.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 2698-2702
-
-
Thiagalingam, S.1
Laken, S.2
Willson, J.K.3
Markowitz, S.D.4
Kinzler, K.W.5
-
22
-
-
49649122847
-
Unbalanced translocation, a major chromosome alteration causing loss of heterozygosity in human lung cancer
-
Ogiwara H, Kohno T, Nakanishi H, Nagayama K, Sato M, et al. (2008) Unbalanced translocation, a major chromosome alteration causing loss of heterozygosity in human lung cancer. Oncogene 27: 4788-4797.
-
(2008)
Oncogene
, vol.27
, pp. 4788-4797
-
-
Ogiwara, H.1
Kohno, T.2
Nakanishi, H.3
Nagayama, K.4
Sato, M.5
-
23
-
-
0043122919
-
SIFT: Predicting amino acid changes that affect protein function
-
Ng PC, Henikoff S, (2003) SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 31: 3812-3814.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
24
-
-
84892628632
-
A note on obtaining confidence intervals for discrete parameters
-
Tingley M, Li C, (1993) A note on obtaining confidence intervals for discrete parameters. The American Statistician 47: 20-23.
-
(1993)
The American Statistician
, vol.47
, pp. 20-23
-
-
Tingley, M.1
Li, C.2
-
25
-
-
15144342687
-
BAP1: a novel ubiquitin hydrolase which binds to the BRCA1 RING finger and enhances BRCA1-mediated cell growth suppression
-
Jensen DE, Proctor M, Marquis ST, Gardner HP, Ha SI, et al. (1998) BAP1: a novel ubiquitin hydrolase which binds to the BRCA1 RING finger and enhances BRCA1-mediated cell growth suppression. Oncogene. 16: 1097-112.
-
(1998)
Oncogene
, vol.16
, pp. 1097-1112
-
-
Jensen, D.E.1
Proctor, M.2
Marquis, S.T.3
Gardner, H.P.4
Ha, S.I.5
-
26
-
-
58249095937
-
BRCA1-associated protein 1 interferes with BRCA1/BARD1 RING heterodimer activity
-
Nishikawa H, Wu W, Koike A, Kojima R, Gomi H, et al. (2009) BRCA1-associated protein 1 interferes with BRCA1/BARD1 RING heterodimer activity. Cancer Res. 69: 111-9.
-
(2009)
Cancer Res
, vol.69
, pp. 111-119
-
-
Nishikawa, H.1
Wu, W.2
Koike, A.3
Kojima, R.4
Gomi, H.5
-
27
-
-
78649700287
-
Frequent Mutation of BAP1 in Metastasizing Uveal Melanomas
-
Harbour JW, Onken MD, Roberson EDO, Duan S, Cao L, et al. (2010). Frequent Mutation of BAP1 in Metastasizing Uveal Melanomas. Science 330, 1410-1413.
-
(2010)
Science
, vol.330
, pp. 1410-1413
-
-
Harbour, J.W.1
Onken, M.D.2
Roberson, E.D.O.3
Duan, S.4
Cao, L.5
-
28
-
-
80053386896
-
Germline mutations in BAP1 predispose to melanocytic tumors
-
Wiesner T, Obenauf AC, Murali R, Fried I, Griewank KG, et al. (2011) Germline mutations in BAP1 predispose to melanocytic tumors. Nat Genet. 43: 1018-21.
-
(2011)
Nat Genet
, vol.43
, pp. 1018-1021
-
-
Wiesner, T.1
Obenauf, A.C.2
Murali, R.3
Fried, I.4
Griewank, K.G.5
-
29
-
-
84861576201
-
The landscape of cancer genes and mutational processes in breast cancer
-
Stephens PJ, Tarpey PS, Davies H, Van Loo P, Greenman C, et al. (2012) The landscape of cancer genes and mutational processes in breast cancer. Nature. 486: 400-4.
-
(2012)
Nature
, vol.486
, pp. 400-404
-
-
Stephens, P.J.1
Tarpey, P.S.2
Davies, H.3
Van Loo, P.4
Greenman, C.5
-
30
-
-
84866525932
-
Charting the landscape of tandem BRCT domain-mediated protein interactions
-
Woods NT, Mesquita RD, Sweet M, Carvalho MA, Li X, et al. (2012) Charting the landscape of tandem BRCT domain-mediated protein interactions. Sci Signal. 5: rs6.
-
(2012)
Sci Signal
, vol.5
-
-
Woods, N.T.1
Mesquita, R.D.2
Sweet, M.3
Carvalho, M.A.4
Li, X.5
-
31
-
-
84862526929
-
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
-
Shah SP, Roth A, Goya R, Oloumi A, Ha G, et al. (2012) The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 486: 395-9.
-
(2012)
Nature
, vol.486
, pp. 395-399
-
-
Shah, S.P.1
Roth, A.2
Goya, R.3
Oloumi, A.4
Ha, G.5
-
32
-
-
23244451412
-
Germline mutations and polymorphisms in the NFKBIA gene in Hodgkin lymphoma
-
Osborne J, Lake A, Alexander FE, Taylor GM, Jarrett RF, (2005) Germline mutations and polymorphisms in the NFKBIA gene in Hodgkin lymphoma. Int J Cancer 116: 646-651.
-
(2005)
Int J Cancer
, vol.116
, pp. 646-651
-
-
Osborne, J.1
Lake, A.2
Alexander, F.E.3
Taylor, G.M.4
Jarrett, R.F.5
-
33
-
-
77951139631
-
Genome remodelling in a basal-like breast cancer metastasis and xenograft
-
Ding L, Ellis MJ, Li S, Larson DE, Chen K, et al. (2010) Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464: 999-1005.
-
(2010)
Nature
, vol.464
, pp. 999-1005
-
-
Ding, L.1
Ellis, M.J.2
Li, S.3
Larson, D.E.4
Chen, K.5
-
34
-
-
77449151833
-
Mutations of NFKBIA in biopsy specimens from Hodgkin lymphoma
-
Liu X, Yu H, Yang W, Zhou X, Lu H, et al. (2010) Mutations of NFKBIA in biopsy specimens from Hodgkin lymphoma. Cancer Genet Cytogenet 197: 152-157.
-
(2010)
Cancer Genet Cytogenet
, vol.197
, pp. 152-157
-
-
Liu, X.1
Yu, H.2
Yang, W.3
Zhou, X.4
Lu, H.5
-
35
-
-
73949129178
-
Fusion genes and chromosome translocations in the common epithelial cancers
-
Edwards PAW, (2010) Fusion genes and chromosome translocations in the common epithelial cancers. J Pathol. 220: 244-54.
-
(2010)
J Pathol
, vol.220
, pp. 244-254
-
-
Edwards, P.A.W.1
-
36
-
-
84858448028
-
Are breast cancers driven by fusion genes?
-
Edwards PAW, Howarth KD, (2012) Are breast cancers driven by fusion genes? Breast Cancer Res (14):: 303.
-
(2012)
Breast Cancer Res
, Issue.14
, pp. 303
-
-
Edwards, P.A.W.1
Howarth, K.D.2
-
37
-
-
17444390881
-
Comparison of features of human breast cancer cell lines and their corresponding tumors
-
Wistuba II, Behrens C, Milchgrub S, Syed S, Ahmadian M, et al. (1998). Comparison of features of human breast cancer cell lines and their corresponding tumors. Clin. Cancer Res 4, 2931-2938.
-
(1998)
Clin. Cancer Res
, vol.4
, pp. 2931-2938
-
-
Wistuba, I.I.1
Behrens, C.2
Milchgrub, S.3
Syed, S.4
Ahmadian, M.5
-
38
-
-
33845209913
-
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
-
Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, et al. (2006). A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell 10, 515-527.
-
(2006)
Cancer Cell
, vol.10
, pp. 515-527
-
-
Neve, R.M.1
Chin, K.2
Fridlyand, J.3
Yeh, J.4
Baehner, F.L.5
-
39
-
-
84861541343
-
Mutational Processes Molding the Genomes of 21 Breast Cancers
-
Nik-Zainal S, Alexandrov LB, Wedge DC, Van Loo P, Greenman CD, et al. (2012) Mutational Processes Molding the Genomes of 21 Breast Cancers. Cell. 149: 979-93.
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
Van Loo, P.4
Greenman, C.D.5
-
40
-
-
84867164956
-
Integrative analysis of genome-wide loss of heterozygosity and mono-allelic expression at nucleotide resolution reveals disrupted pathways in triple negative breast cancer
-
Ha G, Roth A, Lai D, Bashashati A, Ding J, et al. (2012) Integrative analysis of genome-wide loss of heterozygosity and mono-allelic expression at nucleotide resolution reveals disrupted pathways in triple negative breast cancer. Genome Res (10):: 1995-2007.
-
(2012)
Genome Res
, Issue.10
, pp. 1995-2007
-
-
Ha, G.1
Roth, A.2
Lai, D.3
Bashashati, A.4
Ding, J.5
-
41
-
-
84862523863
-
Sequence analysis of mutations and translocations across breast cancer subtypes
-
Banerji S, Cibulskis K, Rangel-Escareño C, Brown KK, Carter SL, et al. (2012) Sequence analysis of mutations and translocations across breast cancer subtypes. Nature 486: 405-9.
-
(2012)
Nature
, vol.486
, pp. 405-409
-
-
Banerji, S.1
Cibulskis, K.2
Rangel-Escareño, C.3
Brown, K.K.4
Carter, S.L.5
-
42
-
-
80051507403
-
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
-
Kim D, Salzberg SL, (2011) TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biol. 12: R72.
-
(2011)
Genome Biol
, vol.12
-
-
Kim, D.1
Salzberg, S.L.2
-
43
-
-
72649090466
-
PICNIC: An algorithm to predict absolute allelic copy number variation with microarray cancer data
-
Greenman CD, Bignell G, Butler A, Edkins S, Hinton J, et al. (2010). PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data. Biostatistics 11, 164-175.
-
(2010)
Biostatistics
, vol.11
, pp. 164-175
-
-
Greenman, C.D.1
Bignell, G.2
Butler, A.3
Edkins, S.4
Hinton, J.5
-
44
-
-
0033732413
-
Molecular cytogenetic analysis of breast cancer cell lines
-
Davidson JM, Gorringe KL, Chin SF, Orsetti B, Besret C, et al. (2000). Molecular cytogenetic analysis of breast cancer cell lines. Br J Cancer 83, 1309-1317.
-
(2000)
Br J Cancer
, vol.83
, pp. 1309-1317
-
-
Davidson, J.M.1
Gorringe, K.L.2
Chin, S.F.3
Orsetti, B.4
Besret, C.5
-
45
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
|