Characteristic Raman lines of phenylalanine analyzed by a multiconformational approach

Journal of Raman Spectroscopy

Volumn 44, Issue 6, 2013, Pages 827-833

  Hernández, Belén ^a   Pflüger, Fernando ^a   Kruglik, Sergei G ^b   Ghomi, Mahmoud ^a  

^a UNIVERSITÉ PARIS 13   (France)

^b University Paris Diderot   (France)

Author keywords

density functional theory; H bonds; hydration; multiconformational analysis; phenylalanine

Indexed keywords

AMINO ACIDS; BODY FLUIDS; HYDRATION; PROTEINS; VIBRATION ANALYSIS;

BOVINE SERUM ALBUMINS; DENSITY-FUNCTIONAL-THEORY; ELECTRONIC-POLARIZABILITY; FREE AMINO ACIDS; H-BONDS; MULTICONFORMATIONAL ANALYSE; PHENYLALANINE; RAMAN DATA; RAMAN LINES; VIBRATION MODES;

DENSITY FUNCTIONAL THEORY;

EID: 84878743932     PISSN: 03770486     EISSN: 10974555     Source Type: Journal    
DOI: 10.1002/jrs.4290     Document Type: Article

References (35)

1. R. Bhattacharyya, U. Samanta, P. Chakrabarti, Prot. Eng. 2002, 15, 91.
2. E. Gazit, FASEB J. 2002; 16, 77.
3. N. Sal-Man, D. Grber, I. Bloch, Y. Shai, J. Biol. Chem. 2007, 282, 19753.
4. L. Adler-Abramovitch, E. Gazit, J. Pept. Sc. 2008, 14, 217.
5. G. E. Schulz, R. H. Schrimer, in Principles of Protein Structure, (Ed., R.H. Cantor,), Springer-Verlag, New York, 1990.
6. J. M. Benevides, S. A. Overman, G. J. Thomas, Jr,. Raman spectroscopy of proteins, in Current Protocols in Protein Science, (Eds., J.E. Coligan, B.M. Dunn, H.L. Ploegh, D.W. Speicher, P.T. Wingfield,), John Wiley & Sons, Inc, 2003, pp 17.8.1-17.8.35
7. H. Takeuchi, Anal. Sc. 2011, 27, 1077.
8. S.A. Oladepo, K. Xiong, Z. Hong, S.A. Asher, J. Handen, I.K. Lednev, Chem. Rev. 2012, 112, 2604.
9. B. Hernández, F. Pflüger, S. Kruglik, M. Ghomi, Submitted to Chem. Phys.
10. I. Jákli, A. Perczel, Ö. Farkas, M. Hollõsi, I.G. Csizmadia, J. Mol. Struct. (THEOCHEM) 1998, 455, 303.
11. B. Hernández, F. Pflüger, A. Adenier, S.G. Kruglik, M. Ghomi, J. Phys. Chem. B 2010, 114, 15319.
12. nd ed., CRC, Boca Raton, FL, 2001, p. 7-1.
13. W. Kohn, L. J. Sham, Phys. Rev. 1965, 140, A1133.
14. A. D. Becke, J. Chem. Phys. 1993, 98, 5648.
15. C. Lee, W. Yang, R. G. Parr, Phys. Rev. B 1988, 37, 785.
16. V. Barone, M. Cossi, J. Phys. Chem. A 1998, 102, 1995.
17. M. Cossi, G. Rega, G. Scalmani, V. Barone, J. Comput. Chem. 2003, 24, 669.
18. M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, D. J. Fox, Gaussian 09, Revision B.01, Gaussian, Inc., Wallingford CT, 2010.
19. B. Hernández, C. Carelli, C. Y. M. Coïc, J. De Coninck, M. Ghomi, J. Phys. Chem. B 2009, 113, 12796.
20. B. Hernández, Y.M. Coïc, S.G. Kruglik, C. Carelli, R. Cohen, M. Ghomi, J. Phys. Chem. B 2012, 116, 9337
21. S. Califano, Vibrational states, Wiley, New York, 1976.
22. T. Ebata, T. Hashimoto, T. Ito, Y. Inokuchi, F. Altunsu, B. Brutschy, P. Tarakeshwar, Phys. Chem. Chem. Phys. 2006, 8, 4783.
23. B. Gao, T. Wyttenbach, M.T. Bowers, J. Am. Chem. Soc. 2009, 131, 4695.
24. P. Rodziewicz, N. Doltsinis, Chemphyschem 2007, 8, 1959.
25. K. Leung, and, S. B. Rempe, J. Chem. Phys. 2005, 122, 18405.
26. E. Kassab, J. Langlet, E. Evleth, Y. Akacem, J. Mol. Struct. (THEOCHEM) 2000, 531, 267.
27. B. Balta, and, V. Aviyente, J. Comp. Chem. 2003, 24, 1789.
28. B. Balta, and, V. Aviyente, J. Comp. Chem. 2004, 25, 690.
29. C. Michaux, J. Wouters, E.A. Perpète, and, D. Jacquemin, J. Phys. Chem. B 2008, 112, 2430.
30. C. Michaux, J. Wouters, E. A. Perpète, and, D. Jacquemin, J. Am. Soc. Mass Spectrom. 2009, 20, 632.
31. M. Remko, D. Fitz, R. Broer, M.M. Rode, J. Mol. Model. 2011, 17, 3117.
32. B. Ravikumar, R. K. Rajaram, V. Ramakrishnan, J. Raman Spectrosc. 2006, 37, 597.
33. J. Walshaw, J.M. Goodfellow, J. Mol. Biol. 1993, 231, 392.
34. T. Steiner, A.M. Schreurs, J.A. Kanters, J. Kroon, Acta Cryst. D Biol. Cryst. 1998, 54, 25.
35. A. Jain, V. Ramanathan, R. Sankararamakrishnan, Prot. Sc. 2009, 18, 595.