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Volumn 12, Issue 6, 2013, Pages 1678-1688

Quantitative proteomics reveals that the specific methyltransferases Txr1p and Ezl2p differentially affect the mono-, di- and trimethylation states of histone H3 lysine 27 (H3K27)

Author keywords

[No Author keywords available]

Indexed keywords

EZL2P PROTEIN; HISTONE H3; HISTONE METHYLTRANSFERASE; LYSINE; NITROGEN 15; TXR1P PROTEIN; UNCLASSIFIED DRUG;

EID: 84878697014     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M112.021733     Document Type: Article
Times cited : (13)

References (51)
  • 1
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
    • Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705 (Pubitemid 46273577)
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 2
    • 73349092441 scopus 로고    scopus 로고
    • Histones: Annotating chromatin
    • Campos, E. I., and Reinberg, D. (2009) Histones: annotating chromatin. Annu. Rev. Genet 43, 559-599
    • (2009) Annu. Rev. Genet , vol.43 , pp. 559-599
    • Campos, E.I.1    Reinberg, D.2
  • 4
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • DOI 10.1126/science.1063127
    • Jenuwein, T., and Allis, C. D. (2001) Translating the histone code. Science 293, 1074-1080 (Pubitemid 32758077)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 5
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • DOI 10.1038/47412
    • Strahl, B. D., and Allis, C. D. (2000) The language of covalent histone modifications. Nature 403, 41-45 (Pubitemid 30038513)
    • (2000) Nature , vol.403 , Issue.6765 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 6
    • 33947513027 scopus 로고    scopus 로고
    • Regulation of histone methylation by demethylimination and demethylation
    • DOI 10.1038/nrm2143, PII NRM2143
    • Klose, R. J., and Zhang, Y. (2007) Regulation of histone methylation by demethylimination and demethylation. Nat. Rev. Mol. Cell. Biol. 8, 307-318 (Pubitemid 46474659)
    • (2007) Nature Reviews Molecular Cell Biology , vol.8 , Issue.4 , pp. 307-318
    • Klose, R.J.1    Zhang, Y.2
  • 7
    • 0035883954 scopus 로고    scopus 로고
    • Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
    • DOI 10.1101/gad.927301
    • Zhang, Y., and Reinberg, D. (2001) Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. Genes Dev. 15, 2343-2360 (Pubitemid 32899739)
    • (2001) Genes and Development , vol.15 , Issue.18 , pp. 2343-2360
    • Zhang, Y.1    Reinberg, D.2
  • 8
    • 77953995002 scopus 로고    scopus 로고
    • Covalent histone modifications- miswritten, misinterpreted and mis-erased in human cancers
    • Chi, P., Allis, C. D., and Wang, G. G. (2010) Covalent histone modifications- miswritten, misinterpreted and mis-erased in human cancers. Nat. Rev. Cancer 10, 457-469
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 457-469
    • Chi, P.1    Allis, C.D.2    Wang, G.G.3
  • 9
    • 24144475284 scopus 로고    scopus 로고
    • Reversing histone methylation
    • DOI 10.1038/nature04048
    • Bannister, A. J., and Kouzarides, T. (2005) Reversing histone methylation. Nature 436, 1103-1106 (Pubitemid 41232281)
    • (2005) Nature , vol.436 , Issue.7054 , pp. 1103-1106
    • Bannister, A.J.1    Kouzarides, T.2
  • 10
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
    • Barski, A., Cuddapah, S., Cui, K., Roh, T. Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837 (Pubitemid 46802390)
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.-Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 11
    • 67650096728 scopus 로고    scopus 로고
    • The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin
    • Loyola, A., Tagami, H., Bonaldi, T., Roche, D., Quivy, J. P., Imhof, A., Nakatani, Y., Dent, S. Y., and Almouzni, G. (2009) The HP1alpha-CAF1-SetDB1- containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin. EMBO Rep. 10, 769-775
    • (2009) EMBO Rep , vol.10 , pp. 769-775
    • Loyola, A.1    Tagami, H.2    Bonaldi, T.3    Roche, D.4    Quivy, J.P.5    Imhof, A.6    Nakatani, Y.7    Dent, S.Y.8    Almouzni, G.9
  • 12
    • 84857187167 scopus 로고    scopus 로고
    • PR-Set7 and H4K20me1: At the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription
    • Beck, D. B., Oda, H., Shen, S. S., and Reinberg, D. (2012) PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription. Genes Dev. 26, 325-337
    • (2012) Genes Dev , vol.26 , pp. 325-337
    • Beck, D.B.1    Oda, H.2    Shen, S.S.3    Reinberg, D.4
  • 13
    • 2642542643 scopus 로고    scopus 로고
    • A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
    • DOI 10.1101/gad.300704
    • Schotta, G., Lachner, M., Sarma, K., Ebert, A., Sengupta, R., Reuter, G., Reinberg, D., and Jenuwein, T. (2004) A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev. 18, 1251-1262 (Pubitemid 38720593)
    • (2004) Genes and Development , vol.18 , Issue.11 , pp. 1251-1262
    • Schotta, G.1    Lachner, M.2    Sarma, K.3    Ebert, A.4    Sengupta, R.5    Reuter, G.6    Reinberg, D.7    Jenuwein, T.8
  • 15
    • 77049099785 scopus 로고    scopus 로고
    • Histone methyltransferases in cancer
    • Albert, M., and Helin, K. (2010) Histone methyltransferases in cancer. Semin. Cell. Dev. Biol. 21, 209-220
    • (2010) Semin. Cell. Dev. Biol. , vol.21 , pp. 209-220
    • Albert, M.1    Helin, K.2
  • 16
    • 27944501617 scopus 로고    scopus 로고
    • Histone modifying enzymes and cancer: Going beyond histones
    • DOI 10.1002/jcb.20615
    • Zhang, K., and Dent, S. Y. (2005) Histone modifying enzymes and cancer: going beyond histones. J. Cell. Biochem. 96, 1137-1148 (Pubitemid 41681856)
    • (2005) Journal of Cellular Biochemistry , vol.96 , Issue.6 , pp. 1137-1148
    • Zhang, K.1    Dent, S.Y.R.2
  • 17
    • 33745840868 scopus 로고    scopus 로고
    • Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis
    • DOI 10.1111/j.1365-313X.2006.02799.x
    • Raynaud, C., Sozzani, R., Glab, N., Domenichini, S., Perennes, C., Cella, R., Kondorosi, E., and Bergounioux, C. (2006) Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. Plant J. 47, 395-407 (Pubitemid 44036408)
    • (2006) Plant Journal , vol.47 , Issue.3 , pp. 395-407
    • Raynaud, C.1    Sozzani, R.2    Glab, N.3    Domenichini, S.4    Perennes, C.5    Cella, R.6    Kondorosi, E.7    Bergounioux, C.8
  • 18
    • 79959893275 scopus 로고    scopus 로고
    • The PHD finger: A versatile epigenome reader
    • Sanchez, R., and Zhou, M. M., (2011) The PHD finger: a versatile epigenome reader. Trends Biochem. Sci. 36, 364-372
    • (2011) Trends Biochem. Sci. , vol.36 , pp. 364-372
    • Sanchez, R.1    Zhou, M.M.2
  • 19
    • 33745809637 scopus 로고    scopus 로고
    • Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
    • DOI 10.1038/nature04802, PII NATURE04802
    • Li, H., Ilin, S., Wang, W., Duncan, E. M., Wysocka, J., Allis, C. D., and Patel, D. J. (2006) Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442, 91-95 (Pubitemid 44064215)
    • (2006) Nature , vol.442 , Issue.7098 , pp. 91-95
    • Li, H.1    Ilin, S.2    Wang, W.3    Duncan, E.M.4    Wysocka, J.5    Allis, C.D.6    Patel, D.J.7
  • 20
    • 33745818717 scopus 로고    scopus 로고
    • Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
    • DOI 10.1038/nature04814, PII NATURE04814
    • Peña, P. V., Davrazou, F., Shi, X., Walter, K. L., Verkhusha, V. V., Gozani, O., Zhao, R., and Kutateladze, T. G. (2006) Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442, 100-103 (Pubitemid 44064217)
    • (2006) Nature , vol.442 , Issue.7098 , pp. 100-103
    • Pena, P.V.1    Davrazou, F.2    Shi, X.3    Walter, K.L.4    Verkhusha, V.V.5    Gozani, O.6    Zhao, R.7    Kutateladze, T.G.8
  • 22
    • 0041885325 scopus 로고    scopus 로고
    • Proliferating cell nuclear antigen (PCNA): A dancer with many partners
    • DOI 10.1242/jcs.00653
    • Maga, G., and Hubscher, U. (2003) Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J. Cell Sci. 116, 3051-3060 (Pubitemid 37038954)
    • (2003) Journal of Cell Science , vol.116 , Issue.15 , pp. 3051-3060
    • Maga, G.1    Hubscher, U.2
  • 24
    • 34250735582 scopus 로고    scopus 로고
    • RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena
    • DOI 10.1101/gad.1544207
    • Liu, Y., Taverna, S. D., Muratore, T. L., Shabanowitz, J., Hunt, D. F., and Allis, C. D. (2007) RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes Dev. 21, 1530-1545 (Pubitemid 46955725)
    • (2007) Genes and Development , vol.21 , Issue.12 , pp. 1530-1545
    • Liu, Y.1    Taverna, S.D.2    Muratore, T.L.3    Shabanowitz, J.4    Hunt, D.F.5    Allis, C.D.6
  • 25
    • 84860329929 scopus 로고    scopus 로고
    • Tetrahymena JMJD3 homolog regulates H3K27 methylation and nuclear differentiation
    • Chung, P. H., and Yao, M. C. (2012) Tetrahymena JMJD3 homolog regulates H3K27 methylation and nuclear differentiation. Eukaryot. Cell 11, 601-614
    • (2012) Eukaryot. Cell , vol.11 , pp. 601-614
    • Chung, P.H.1    Yao, M.C.2
  • 28
    • 33846809241 scopus 로고    scopus 로고
    • Characterization of histones and their post-translational modifications by mass spectrometry
    • DOI 10.1016/j.cbpa.2006.11.022, PII S1367593106001864
    • Garcia, B. A., Shabanowitz, J., and Hunt, D. F. (2007) Characterization of histones and their post-translational modifications by mass spectrometry. Curr. Opin. Chem. Biol. 11, 66-73 (Pubitemid 46216127)
    • (2007) Current Opinion in Chemical Biology , vol.11 , Issue.1 , pp. 66-73
    • Garcia, B.A.1    Shabanowitz, J.2    Hunt, D.F.3
  • 29
    • 33750630871 scopus 로고    scopus 로고
    • Deciphering the histone code using mass spectrometry
    • Ueberheide, B., and Mollah, S. (2007) Deciphering the histone code using mass spectrometry. Int. J. Mass Spectrom. 259, 46-56
    • (2007) Int. J. Mass Spectrom. , vol.259 , pp. 46-56
    • Ueberheide, B.1    Mollah, S.2
  • 30
    • 34247110340 scopus 로고    scopus 로고
    • Mass spectrometry-based strategies for characterization of histones and their post-translational modifications
    • DOI 10.1586/14789450.4.2.211
    • Su, X., Ren, C., and Freitas, M. A. (2007) Mass spectrometry-based strategies for characterization of histones and their post-translational modifications. Exp. Rev. Proteomics 4, 211-225 (Pubitemid 46588457)
    • (2007) Expert Review of Proteomics , vol.4 , Issue.2 , pp. 211-225
    • Su, X.1    Ren, C.2    Freitas, M.A.3
  • 33
    • 77951855269 scopus 로고    scopus 로고
    • Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36
    • Jung, H. R., Pasini, D., Helin, K., and Jensen, O. N. (2010) Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36. Mol. Cell. Proteomics 9, 838-850
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 838-850
    • Jung, H.R.1    Pasini, D.2    Helin, K.3    Jensen, O.N.4
  • 34
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong, S. E., and Mann, M. (2005) Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1, 252-262
    • (2005) Nat. Chem. Biol. , vol.1 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 37
    • 34248577604 scopus 로고    scopus 로고
    • Chemical derivatization of histones for facilitated analysis by mass spectrometry
    • DOI 10.1038/nprot.2007.106, PII NPROT.2007.106
    • Garcia, B. A., Mollah, S., Ueberheide, B. M., Busby, S. A., Muratore, T. L., Shabanowitz, J., and Hunt, D. F. (2007) Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nat. Protoc. 2, 933-938 (Pubitemid 46745589)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 933-938
    • Garcia, B.A.1    Mollah, S.2    Ueberheide, B.M.3    Busby, S.A.4    Muratore, T.L.5    Shabanowitz, J.6    Hunt, D.F.7
  • 38
    • 22844436250 scopus 로고    scopus 로고
    • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    • DOI 10.1038/nbt1086
    • Ishihama, Y., Sato, T., Tabata, T., Miyamoto, N., Sagane, K., Nagasu, T., and Oda, Y. (2005) Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nat. Biotechnol. 23, 617-621 (Pubitemid 41724902)
    • (2005) Nature Biotechnology , vol.23 , Issue.5 , pp. 617-621
    • Ishihama, Y.1    Sato, T.2    Tabata, T.3    Miyamoto, N.4    Sagane, K.5    Nagasu, T.6    Oda, Y.7
  • 39
    • 4444346217 scopus 로고    scopus 로고
    • Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
    • DOI 10.1021/ac049208j
    • Wu, C. C., MacCoss, M. J., Howell, K. E., Matthews, D. E., and Yates, J. R., III (2004) Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal. Chem. 76, 4951-4959 (Pubitemid 39180319)
    • (2004) Analytical Chemistry , vol.76 , Issue.17 , pp. 4951-4959
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Matthews, D.E.4    Yates III, J.R.5
  • 40
    • 77952226764 scopus 로고    scopus 로고
    • Super-SILAC mix for quantitative proteomics of human tumor tissue
    • Geiger, T., Cox, J., Ostasiewicz, P., Wisniewski, J. R., and Mann, M. (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat. Methods 7, 383-385
    • (2010) Nat. Methods , vol.7 , pp. 383-385
    • Geiger, T.1    Cox, J.2    Ostasiewicz, P.3    Wisniewski, J.R.4    Mann, M.5
  • 41
    • 65649109706 scopus 로고    scopus 로고
    • Tetrahymena meiotic nuclear reorganization is induced by a checkpoint kinase-dependent response to DNA damage
    • Loidl, J., and Mochizuki, K. (2009) Tetrahymena meiotic nuclear reorganization is induced by a checkpoint kinase-dependent response to DNA damage. Mol. Biol. Cell 20, 2428-2437
    • (2009) Mol. Biol. Cell , vol.20 , pp. 2428-2437
    • Loidl, J.1    Mochizuki, K.2
  • 42
    • 0030898528 scopus 로고    scopus 로고
    • Germline and somatic transformation of mating Tetrahymena thermophila by particle bombardment
    • Cassidy-Hanley, D., Bowen, J., Lee, J. H., Cole, E., VerPlank, L. A., Gaertig, J., Gorovsky, M. A., and Bruns, P. J. (1997) Germline and somatic transformation of mating Tetrahymena thermophila by particle bombardment. Genetics 146, 135-147 (Pubitemid 27194396)
    • (1997) Genetics , vol.146 , Issue.1 , pp. 135-147
    • Cassidy-Hanley, D.1    Bowen, J.2    Lee, J.H.3    Cole, E.4    VerPlank, L.A.5    Gaertig, J.6    Gorovsky, M.A.7    Bruns, P.J.8
  • 43
    • 0014914317 scopus 로고
    • Studies on nuclear structure and function in Tetrahymena pyriformis. II. Isolation of macro- and micronuclei
    • Gorovsky, M. A. (1970) Studies on nuclear structure and function in Tetrahymena pyriformis. II. Isolation of macro- and micronuclei. J. Cell Biol. 47, 619-630
    • (1970) J. Cell Biol. , vol.47 , pp. 619-630
    • Gorovsky, M.A.1
  • 44
    • 0014905779 scopus 로고
    • Studies on nuclear structure and function in Tetrahymena pyriformis. 3. Comparison of the histones of macro- and micronuclei by quantitative polyacrylamide gel electrophoresis
    • Gorovsky, M. A. (1970) Studies on nuclear structure and function in Tetrahymena pyriformis. 3. Comparison of the histones of macro- and micronuclei by quantitative polyacrylamide gel electrophoresis. J. Cell Biol. 47, 631-636
    • (1970) J. Cell Biol. , vol.47 , pp. 631-636
    • Gorovsky, M.A.1
  • 45
    • 34250782684 scopus 로고    scopus 로고
    • Extraction, purification and analysis of histones
    • DOI 10.1038/nprot.2007.202, PII NPROT.2007.202
    • Shechter, D., Dormann, H. L., Allis, C. D., and Hake, S. B. (2007) Extraction, purification and analysis of histones. Nat. Protoc. 2, 1445-1457 (Pubitemid 46952324)
    • (2007) Nature Protocols , vol.2 , Issue.6 , pp. 1445-1457
    • Shechter, D.1    Dormann, H.L.2    Allis, C.D.3    Hake, S.B.4
  • 46
    • 33749599697 scopus 로고    scopus 로고
    • Deposition and function of histone H3 variants in Tetrahymena thermophila
    • DOI 10.1128/MCB.01139-06
    • Cui, B., Liu, Y., and Gorovsky, M. A. (2006) Deposition and function of histone H3 variants in Tetrahymena thermophila. Mol. Cell. Biol. 26, 7719-7730 (Pubitemid 44547718)
    • (2006) Molecular and Cellular Biology , vol.26 , Issue.20 , pp. 7719-7730
    • Cui, B.1    Liu, Y.2    Gorovsky, M.A.3
  • 47
    • 0030881925 scopus 로고    scopus 로고
    • Constitutive expression, not a particular primary sequence, is the important feature of the H3 replacement variant HV2 in Tetrahymena thermophila
    • Yu, L., and Gorovsky, M. A. (1997) Constitutive expression, not a particular primary sequence, is the important feature of the H3 replacement variant hv2 in Tetrahymena thermophila. Mol. Cell. Biol. 17, 6303-6310 (Pubitemid 27451174)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.11 , pp. 6303-6310
    • Yu, L.1    Gorovsky, M.A.2
  • 49
    • 16344389629 scopus 로고    scopus 로고
    • Metabolic labeling of proteins for proteomics
    • DOI 10.1074/mcp.R400010-MCP200
    • Beynon, R. J., and Pratt, J. M. (2005) Metabolic labeling of proteins for proteomics. Mol. Cell. Proteomics 4, 857-872 (Pubitemid 41309145)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.7 , pp. 857-872
    • Beynon, R.J.1    Pratt, J.M.2
  • 51
    • 84655170009 scopus 로고    scopus 로고
    • A model for mitotic inheritance of histone lysine methylation
    • Xu, M., Wang, W., Chen, S., and Zhu, B. (2011) A model for mitotic inheritance of histone lysine methylation. EMBO Rep. 13, 60-67
    • (2011) EMBO Rep. , vol.13 , pp. 60-67
    • Xu, M.1    Wang, W.2    Chen, S.3    Zhu, B.4


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