메뉴 건너뛰기




Volumn 15, Issue 6, 2013, Pages 1842-1852

Adding a cost of resistance description extends the ability of virus-host model to explain observed patterns in structure and function of pelagic microbial communities

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIODIVERSITY; HOST PATHOGEN INTERACTION; PHYSIOLOGY; PROKARYOTIC CELL; THEORETICAL MODEL; VIRAL PHENOMENA AND FUNCTIONS; VIROLOGY;

EID: 84878668606     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12077     Document Type: Article
Times cited : (45)

References (57)
  • 1
    • 79959842126 scopus 로고    scopus 로고
    • Genomic island variability facilitates Prochlorococcus-virus coexistence
    • Avrani, S., Wurtzel, O., Sharon, I., Sorek, R., and Lindell, D. (2011) Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474: 604-608.
    • (2011) Nature , vol.474 , pp. 604-608
    • Avrani, S.1    Wurtzel, O.2    Sharon, I.3    Sorek, R.4    Lindell, D.5
  • 2
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou, R., Fremaux, C., Devau, H., Richards, M., Boyaval, P., Moineau, S., etal. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Devau, H.3    Richards, M.4    Boyaval, P.5    Moineau, S.6
  • 3
    • 0033799760 scopus 로고    scopus 로고
    • The relative importance of competition and predation varies with productivity in a model community
    • Bohannan, B.J.M., and Lenski, R.E. (2000) The relative importance of competition and predation varies with productivity in a model community. Am Nat 156: 329-340.
    • (2000) Am Nat , vol.156 , pp. 329-340
    • Bohannan, B.J.M.1    Lenski, R.E.2
  • 4
    • 33846060282 scopus 로고    scopus 로고
    • Key role of selective viral-induced mortality in determining marine bacterial community composition
    • Bouvier, T., and del Giorgio, P.A. (2007) Key role of selective viral-induced mortality in determining marine bacterial community composition. Environ Microbiol 9: 287-297.
    • (2007) Environ Microbiol , vol.9 , pp. 287-297
    • Bouvier, T.1    del Giorgio, P.A.2
  • 6
    • 0037035385 scopus 로고    scopus 로고
    • Antagonistic coevolution between a bacterium and a bacteriophage
    • Buckling, A., and Rainey, P.B. (2002) Antagonistic coevolution between a bacterium and a bacteriophage. Proc R Soc Lond B Biol Sci 269: 931-936.
    • (2002) Proc R Soc Lond B Biol Sci , vol.269 , pp. 931-936
    • Buckling, A.1    Rainey, P.B.2
  • 8
    • 10944248427 scopus 로고    scopus 로고
    • Computing prokaryotic gene ubiquity: rescuing the core from extinction
    • Charlebois, R.L., and Doolittle, W.F. (2004) Computing prokaryotic gene ubiquity: rescuing the core from extinction. Genome Res 14: 2469-2477.
    • (2004) Genome Res , vol.14 , pp. 2469-2477
    • Charlebois, R.L.1    Doolittle, W.F.2
  • 9
    • 66149119261 scopus 로고    scopus 로고
    • The microbial ocean from genomes to biomes
    • DeLong, E.F. (2009) The microbial ocean from genomes to biomes. Nature 459: 200-206.
    • (2009) Nature , vol.459 , pp. 200-206
    • DeLong, E.F.1
  • 10
    • 83155178479 scopus 로고    scopus 로고
    • Comparison of growth rates of aerobic anoxygenic phototrophic bacteria and other bacterioplankton groups in coastal Mediterranean waters
    • Ferrera, I., Gasol, J.M., Sebastian, M., Hojerova, E., and Koblizek, M. (2011) Comparison of growth rates of aerobic anoxygenic phototrophic bacteria and other bacterioplankton groups in coastal Mediterranean waters. Appl Environ Microbiol 77: 7451-7458.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7451-7458
    • Ferrera, I.1    Gasol, J.M.2    Sebastian, M.3    Hojerova, E.4    Koblizek, M.5
  • 12
    • 79951516638 scopus 로고    scopus 로고
    • Relationships between coastal bacterioplankton growth rates and biomass production: comparison of leucine and thymidin uptake with single-cell physiological characteristics
    • Franco-Vidal, L., and Moran, X.A.G. (2011) Relationships between coastal bacterioplankton growth rates and biomass production: comparison of leucine and thymidin uptake with single-cell physiological characteristics. Microb Ecol 61: 328-341.
    • (2011) Microb Ecol , vol.61 , pp. 328-341
    • Franco-Vidal, L.1    Moran, X.A.G.2
  • 13
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman, J.A. (1999) Marine viruses and their biogeochemical and ecological effects. Nature 399: 541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 14
    • 0028995804 scopus 로고
    • Viruses and protist cause similar bacterial mortality in coastal seawater
    • Fuhrman, J.A., and Noble, R.T. (1995) Viruses and protist cause similar bacterial mortality in coastal seawater. Limnol Oceanogr 40: 1236-1242.
    • (1995) Limnol Oceanogr , vol.40 , pp. 1236-1242
    • Fuhrman, J.A.1    Noble, R.T.2
  • 15
    • 79953281735 scopus 로고    scopus 로고
    • Bacteria-phage antagonistic coevolution in soil
    • Gomez, P., and Buckling, A. (2001) Bacteria-phage antagonistic coevolution in soil. Science 332: 106-109.
    • (2001) Science , vol.332 , pp. 106-109
    • Gomez, P.1    Buckling, A.2
  • 16
    • 84865798438 scopus 로고    scopus 로고
    • Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus
    • Haerter, J.O., and Sneppen, K. (2012) Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus. mBio 3: e00126-e00112.
    • (2012) mBio , vol.3
    • Haerter, J.O.1    Sneppen, K.2
  • 17
    • 0026267533 scopus 로고
    • Production and decay of viruses in aquatic environments
    • Heldal, M., and Bratbak, G. (1991) Production and decay of viruses in aquatic environments. Mar Ecol Prog Ser 72: 205-212.
    • (1991) Mar Ecol Prog Ser , vol.72 , pp. 205-212
    • Heldal, M.1    Bratbak, G.2
  • 18
    • 35948993040 scopus 로고    scopus 로고
    • Large variabiliities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts
    • Holmfeldt, K., Middelboe, M., Nybroe, O., and Riemann, L. (2007) Large variabiliities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts. Appl Environ Microbiol 73: 6730-6739.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6730-6739
    • Holmfeldt, K.1    Middelboe, M.2    Nybroe, O.3    Riemann, L.4
  • 19
    • 18944397385 scopus 로고    scopus 로고
    • Phytoplankton blooms: a 'loop-hole' in microzooplankton grazing impact?
    • Irigoien, X., Flynn, K.L., and Harris, R.P. (2005) Phytoplankton blooms: a 'loop-hole' in microzooplankton grazing impact? J Plankton Res 27: 313-321.
    • (2005) J Plankton Res , vol.27 , pp. 313-321
    • Irigoien, X.1    Flynn, K.L.2    Harris, R.P.3
  • 20
    • 77950526876 scopus 로고    scopus 로고
    • Dormancy contributes to the maintenance of microbial diversity
    • Jones, S.E., and Lennon, J.T. (2010) Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad Sci USA 107: 5881-5886.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 5881-5886
    • Jones, S.E.1    Lennon, J.T.2
  • 21
    • 0027338308 scopus 로고
    • Estimating the growth rate of slowly growing marine bacteria from RNA content
    • Kemp, P.F., Lee, S., and LaRoche, J. (1993) Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl Environ Microbiol 59: 2594-2601.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2594-2601
    • Kemp, P.F.1    Lee, S.2    LaRoche, J.3
  • 23
    • 77951115860 scopus 로고    scopus 로고
    • Detecting genomic islands using bioinformatics approaches
    • Langille, M.G.I., Hsiao, W.W.L., and Brinkman, F.S.L. (2010) Detecting genomic islands using bioinformatics approaches. Nat Rev Microbiol 8: 373-382.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 373-382
    • Langille, M.G.I.1    Hsiao, W.W.L.2    Brinkman, F.S.L.3
  • 24
    • 34547781107 scopus 로고    scopus 로고
    • Is there a cost of virus resistance in marine cyanobacteria?
    • Lennon, J.T., Khatana, S.A.M., Marston, M.F., and Martiny, J.M. (2007) Is there a cost of virus resistance in marine cyanobacteria? ISME J 1: 300-213.
    • (2007) ISME J , vol.1 , pp. 300-213
    • Lennon, J.T.1    Khatana, S.A.M.2    Marston, M.F.3    Martiny, J.M.4
  • 25
    • 0001498391 scopus 로고
    • Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maldaptive effects associated with resistance to virus T4
    • Lenski, R.E. (1988) Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maldaptive effects associated with resistance to virus T4. Evolution 42: 433-440.
    • (1988) Evolution , vol.42 , pp. 433-440
    • Lenski, R.E.1
  • 26
    • 0000313246 scopus 로고
    • Resoure-limited growth, competition, and predation: a model and experimental studies with bacteria and bacteriophage
    • Levin, B.R., Stewart, F.M., and Chao, L. (1977) Resoure-limited growth, competition, and predation: a model and experimental studies with bacteria and bacteriophage. Am Nat 111: 3-24.
    • (1977) Am Nat , vol.111 , pp. 3-24
    • Levin, B.R.1    Stewart, F.M.2    Chao, L.3
  • 27
    • 0031743036 scopus 로고    scopus 로고
    • Annual average abundance of heterotrophic bacteria and synechococcus in surface ocean waters
    • Li, W.K.W. (1998) Annual average abundance of heterotrophic bacteria and synechococcus in surface ocean waters. Limnol Oceanogr 43: 1746-1753.
    • (1998) Limnol Oceanogr , vol.43 , pp. 1746-1753
    • Li, W.K.W.1
  • 28
    • 35848951614 scopus 로고    scopus 로고
    • The role of functional traits and trade-offs in structuring phytoplankton communities: scaling from cellular to ecosystem level
    • Litchman, E., Klausmeier, C.A., Schofield, O.M., and Falkowski, P.G. (2007) The role of functional traits and trade-offs in structuring phytoplankton communities: scaling from cellular to ecosystem level. Ecol Lett 10: 1170-1181.
    • (2007) Ecol Lett , vol.10 , pp. 1170-1181
    • Litchman, E.1    Klausmeier, C.A.2    Schofield, O.M.3    Falkowski, P.G.4
  • 29
    • 0036183714 scopus 로고    scopus 로고
    • The evolutionary significance of parasitism: do parasite-driven genetic dynamics occur ex silico?
    • Little, T.J. (2002) The evolutionary significance of parasitism: do parasite-driven genetic dynamics occur ex silico? J Evol Biol 15: 1-9.
    • (2002) J Evol Biol , vol.15 , pp. 1-9
    • Little, T.J.1
  • 30
    • 3242797571 scopus 로고    scopus 로고
    • Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
    • Malmstrom, R.R., Kiene, R.P., Cottrell, M.T., and Kirchman, D.L. (2004) Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl Environ Microbiol 79: 4129-4135.
    • (2004) Appl Environ Microbiol , vol.79 , pp. 4129-4135
    • Malmstrom, R.R.1    Kiene, R.P.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 31
    • 0038342844 scopus 로고    scopus 로고
    • Interaction of nutrient limitation and protozoan grazing determines the phenotypic structure of a bacterial community
    • Matz, C., and Jurgens, K. (2003) Interaction of nutrient limitation and protozoan grazing determines the phenotypic structure of a bacterial community. Microb Ecol 45: 384-398.
    • (2003) Microb Ecol , vol.45 , pp. 384-398
    • Matz, C.1    Jurgens, K.2
  • 32
    • 0024224920 scopus 로고
    • Defence and regrowth, alternative plant strategies in the struggle against herbivores
    • von der Meijden, E., Wijn, M., and Verkaar, H. (1988) Defence and regrowth, alternative plant strategies in the struggle against herbivores. Oikos 51: 355-363.
    • (1988) Oikos , vol.51 , pp. 355-363
    • von der Meijden, E.1    Wijn, M.2    Verkaar, H.3
  • 33
    • 0033784827 scopus 로고    scopus 로고
    • Bacterial growth rate and marine virus-host dynamics
    • Middelboe, M. (2000) Bacterial growth rate and marine virus-host dynamics. Microb Ecol 40: 114-124.
    • (2000) Microb Ecol , vol.40 , pp. 114-124
    • Middelboe, M.1
  • 34
    • 0035211598 scopus 로고    scopus 로고
    • Effects of bacteriophages on the population dynamics of four strains of pelagic marine bacteria
    • Middelboe, M., Hagström, A., Blackburn, N., Sinn, B., Fischer, U., Borch, N.H., etal. (2001) Effects of bacteriophages on the population dynamics of four strains of pelagic marine bacteria. Microb Ecol 42: 395-406.
    • (2001) Microb Ecol , vol.42 , pp. 395-406
    • Middelboe, M.1    Hagström, A.2    Blackburn, N.3    Sinn, B.4    Fischer, U.5    Borch, N.H.6
  • 35
    • 68249096294 scopus 로고    scopus 로고
    • Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties
    • Middelboe, M., Holmfeldt, K., Riemann, L., Nybroe, O., and Haaber, J. (2009) Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties. Environ Microbiol 11: 1971-1982.
    • (2009) Environ Microbiol , vol.11 , pp. 1971-1982
    • Middelboe, M.1    Holmfeldt, K.2    Riemann, L.3    Nybroe, O.4    Haaber, J.5
  • 36
    • 33645880129 scopus 로고    scopus 로고
    • Viral burst size of heterotrophic prokaryotes in aquatic systems
    • Parada, V., Herndl, G.J., and Weinbauer, M.G. (2006) Viral burst size of heterotrophic prokaryotes in aquatic systems. J Mar Biol 86: 613-621.
    • (2006) J Mar Biol , vol.86 , pp. 613-621
    • Parada, V.1    Herndl, G.J.2    Weinbauer, M.G.3
  • 37
    • 0001427264 scopus 로고    scopus 로고
    • Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community
    • Pernthaler, J., Sattler, B., Simek, K., Schwarzenbacher, A., and Psenner, R. (1996) Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquat Microb Ecol 10: 255-263.
    • (1996) Aquat Microb Ecol , vol.10 , pp. 255-263
    • Pernthaler, J.1    Sattler, B.2    Simek, K.3    Schwarzenbacher, A.4    Psenner, R.5
  • 40
    • 0002947255 scopus 로고    scopus 로고
    • A mathematical theory of communication
    • Shannon, C.E. (2001) A mathematical theory of communication. Mobile Comp Commun Rev 5: 3-55.
    • (2001) Mobile Comp Commun Rev , vol.5 , pp. 3-55
    • Shannon, C.E.1
  • 41
    • 0035374573 scopus 로고    scopus 로고
    • Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
    • Simek, K., Pernthaler, J., Weinbauer, M.G., Hornak, K., Dolan, J.R., Nedoma, J., etal. (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67: 2723-2733.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2723-2733
    • Simek, K.1    Pernthaler, J.2    Weinbauer, M.G.3    Hornak, K.4    Dolan, J.R.5    Nedoma, J.6
  • 42
    • 77649214475 scopus 로고    scopus 로고
    • Assesing niche separation among coexisting limnohabitans strains through interactions with a competitor, viruses, and a bacterivore
    • Simek, K., Kasalicky, V., Hornak, K., Hahn, M.W., and Weinbauer, M.G. (2010) Assesing niche separation among coexisting limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Appl Environ Microbiol 76: 1406-1416.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1406-1416
    • Simek, K.1    Kasalicky, V.2    Hornak, K.3    Hahn, M.W.4    Weinbauer, M.G.5
  • 44
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • Suttle, C.A. (2007) Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 5: 801-812.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 45
    • 0026458628 scopus 로고
    • Mechanisms and rates of decay of marine viruses in seawater
    • Suttle, C.A., and Chen, F. (1992) Mechanisms and rates of decay of marine viruses in seawater. Appl Environ Microbiol 58: 3721-3729.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 3721-3729
    • Suttle, C.A.1    Chen, F.2
  • 46
    • 0033826796 scopus 로고    scopus 로고
    • Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
    • Thingstad, T.F. (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45: 1320-1328.
    • (2000) Limnol Oceanogr , vol.45 , pp. 1320-1328
    • Thingstad, T.F.1
  • 47
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad, T.F., and Lignell, R. (1997) Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microb Ecol 13: 19-27.
    • (1997) Aquat Microb Ecol , vol.13 , pp. 19-27
    • Thingstad, T.F.1    Lignell, R.2
  • 48
    • 0030427091 scopus 로고    scopus 로고
    • On the strategy of 'eating your competitor'. A mathematical analysis
    • Thingstad, T.F., Havskum, H., Garde, K., and Riemann, B. (1996) On the strategy of 'eating your competitor'. A mathematical analysis. Ecology 77: 2108-2118.
    • (1996) Ecology , vol.77 , pp. 2108-2118
    • Thingstad, T.F.1    Havskum, H.2    Garde, K.3    Riemann, B.4
  • 49
    • 0020378042 scopus 로고
    • Phytoplankton community ecology: the role of limiting nutrients
    • Tilman, D., Kilham, S.S., and Kilham, P. (1982) Phytoplankton community ecology: the role of limiting nutrients. Annu Rev Ecol Syst 13: 349-372.
    • (1982) Annu Rev Ecol Syst , vol.13 , pp. 349-372
    • Tilman, D.1    Kilham, S.S.2    Kilham, P.3
  • 50
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer, M.G. (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127-181.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 51
    • 0842266354 scopus 로고    scopus 로고
    • Are viruses driving microbial diversification and diversity?
    • Weinbauer, M.G., and Rassoulzadegan, F. (2004) Are viruses driving microbial diversification and diversity? Environ Microbiol 6: 1-11.
    • (2004) Environ Microbiol , vol.6 , pp. 1-11
    • Weinbauer, M.G.1    Rassoulzadegan, F.2
  • 52
    • 22144446352 scopus 로고    scopus 로고
    • Coevolutionary arms races between bacteria and bacteriophage
    • Weitz, J.S., Hartman, H., and Levin, S.A. (2005) Coevolutionary arms races between bacteria and bacteriophage. Proc Natl Acad Sci USA 102: 9535-9540.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9535-9540
    • Weitz, J.S.1    Hartman, H.2    Levin, S.A.3
  • 54
    • 0032858844 scopus 로고    scopus 로고
    • Viruses and nutrient cycles in the sea - viruses play critical roles in the structure and function of aquatic food webs
    • Wilhelm, S.W., and Suttle, C.A. (1999) Viruses and nutrient cycles in the sea - viruses play critical roles in the structure and function of aquatic food webs. Bioscience 49: 781-788.
    • (1999) Bioscience , vol.49 , pp. 781-788
    • Wilhelm, S.W.1    Suttle, C.A.2
  • 55
    • 77749309301 scopus 로고    scopus 로고
    • Trade-offs between competition and defense specialists among unicellular planktonic organisms: the 'Killing the Winner' hypothesis revisited
    • Winter, C., Bouvier, T., Weinbauer, M.G., and Thingstad, T.F. (2010) Trade-offs between competition and defense specialists among unicellular planktonic organisms: the 'Killing the Winner' hypothesis revisited. Microbiol Mol Biol Rev 74: 42-57.
    • (2010) Microbiol Mol Biol Rev , vol.74 , pp. 42-57
    • Winter, C.1    Bouvier, T.2    Weinbauer, M.G.3    Thingstad, T.F.4
  • 56
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • Wommack, K.E., and Colwell, R.R. (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64: 69-114.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 57
    • 0036899166 scopus 로고    scopus 로고
    • Biologcial and biomedical implications of the co-evolution of pathogens and their hosts
    • Woolhouse, M.E.J., Webster, J.P., Domingo, E., Charlesworth, B., and Leving, B.R. (2002) Biologcial and biomedical implications of the co-evolution of pathogens and their hosts. Nat Genet 32: 569-577.
    • (2002) Nat Genet , vol.32 , pp. 569-577
    • Woolhouse, M.E.J.1    Webster, J.P.2    Domingo, E.3    Charlesworth, B.4    Leving, B.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.