-
1
-
-
28544446695
-
Biomarkers in cancer staging, prognosis and treatment selection
-
Ludwig JA, Weinstein JN, (2005) Biomarkers in cancer staging, prognosis and treatment selection. Nat Rev Cancer 5: 845-856.
-
(2005)
Nat Rev Cancer
, vol.5
, pp. 845-856
-
-
Ludwig, J.A.1
Weinstein, J.N.2
-
2
-
-
0037648348
-
The case for early detection
-
Etzioni R, Urban N, Ramsey S, McIntosh M, Schwartz S, et al. (2003) The case for early detection. Nat Rev Cancer 3: 243-252.
-
(2003)
Nat Rev Cancer
, vol.3
, pp. 243-252
-
-
Etzioni, R.1
Urban, N.2
Ramsey, S.3
McIntosh, M.4
Schwartz, S.5
-
3
-
-
79953784627
-
Personalized medicine-trends in molecular diagnostics: exponential growth expected in the next ten years
-
Hoggatt J, (2011) Personalized medicine-trends in molecular diagnostics: exponential growth expected in the next ten years. Mol Diagn Ther 15: 53-55.
-
(2011)
Mol Diagn Ther
, vol.15
, pp. 53-55
-
-
Hoggatt, J.1
-
4
-
-
84860390334
-
Predictive biomarkers: a paradigm shift towards personalized cancer medicine
-
La Thangue NB, Kerr DJ, (2011) Predictive biomarkers: a paradigm shift towards personalized cancer medicine. Nat Rev Clin Oncol 8: 587-596.
-
(2011)
Nat Rev Clin Oncol
, vol.8
, pp. 587-596
-
-
La Thangue, N.B.1
Kerr, D.J.2
-
5
-
-
0035068795
-
Prostate-specific antigen: current status
-
Lukes M, Urban M, Zalesky M, Zachoval R, Heracek J, et al. (2001) Prostate-specific antigen: current status. Gynecol Oncol 47: 41-49.
-
(2001)
Gynecol Oncol
, vol.47
, pp. 41-49
-
-
Lukes, M.1
Urban, M.2
Zalesky, M.3
Zachoval, R.4
Heracek, J.5
-
6
-
-
43749093001
-
Development and evaluation of classifiers
-
Alonzo TA, Pepe MS, (2007) Development and evaluation of classifiers. Methods Mol Biol 404: 89-116.
-
(2007)
Methods Mol Biol
, vol.404
, pp. 89-116
-
-
Alonzo, T.A.1
Pepe, M.S.2
-
7
-
-
69249159556
-
Development of biomarker classifiers from high-dimensional data
-
Baek S, Tsai CA, Chen JJ, (2009) Development of biomarker classifiers from high-dimensional data. Brief Bioinform 10: 537-546.
-
(2009)
Brief Bioinform
, vol.10
, pp. 537-546
-
-
Baek, S.1
Tsai, C.A.2
Chen, J.J.3
-
8
-
-
0242610432
-
Recursive partitioning as an approach to selection of immune markers for tumor diagnosis
-
Koziol JA, Zhang JY, Casiano CA, Peng XX, Shi FD, et al. (2003) Recursive partitioning as an approach to selection of immune markers for tumor diagnosis. Clin Cancer Res 9: 5120-5126.
-
(2003)
Clin Cancer Res
, vol.9
, pp. 5120-5126
-
-
Koziol, J.A.1
Zhang, J.Y.2
Casiano, C.A.3
Peng, X.X.4
Shi, F.D.5
-
9
-
-
0025253963
-
Clinical significance of a multiple biomarker assay in patients with lung cancer. A study with logistic regression analysis
-
Lombardi C, Tassi GF, Pizzocolo G, Donato F, (1990) Clinical significance of a multiple biomarker assay in patients with lung cancer. A study with logistic regression analysis. Chest 97: 639-644.
-
(1990)
Chest
, vol.97
, pp. 639-644
-
-
Lombardi, C.1
Tassi, G.F.2
Pizzocolo, G.3
Donato, F.4
-
10
-
-
0023677798
-
Multiple markers for lung cancer diagnosis: validation of models for localized lung cancer
-
Gail MH, Muenz L, McIntire KR, Radovich B, Braunstein G, et al. (1988) Multiple markers for lung cancer diagnosis: validation of models for localized lung cancer. J Natl Cancer Inst 80: 97-101.
-
(1988)
J Natl Cancer Inst
, vol.80
, pp. 97-101
-
-
Gail, M.H.1
Muenz, L.2
McIntire, K.R.3
Radovich, B.4
Braunstein, G.5
-
11
-
-
0242440011
-
Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity
-
Bouwman K, Qiu J, Zhou H, Schotanus M, Mangold LA, et al. (2003) Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity. Proteomics 3: 2200-2207.
-
(2003)
Proteomics
, vol.3
, pp. 2200-2207
-
-
Bouwman, K.1
Qiu, J.2
Zhou, H.3
Schotanus, M.4
Mangold, L.A.5
-
12
-
-
0036489046
-
Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
-
Dudoit S, Fridlyand J, Speed TP, (2002) Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data. Journal of the American Statistical Association 97: 77-87.
-
(2002)
Journal of the American Statistical Association
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
13
-
-
0037388166
-
Cell and tumor classification using gene expression data: construction of forests
-
Zhang H, Yu CY, Singer B, (2003) Cell and tumor classification using gene expression data: construction of forests. Proc Natl Acad Sci U S A 100: 4168-4172.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 4168-4172
-
-
Zhang, H.1
Yu, C.Y.2
Singer, B.3
-
14
-
-
0030211964
-
Bagging predictors
-
Breiman L, (1996) Bagging predictors. Machine Learning 24: 123-140.
-
(1996)
Machine Learning
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
15
-
-
0020682059
-
Statistical approach to immunosuppression classification using lymphocyte surface markers and functional assays
-
Dillman RO, Koziol JA, (1983) Statistical approach to immunosuppression classification using lymphocyte surface markers and functional assays. Cancer Res 43: 417-421.
-
(1983)
Cancer Res
, vol.43
, pp. 417-421
-
-
Dillman, R.O.1
Koziol, J.A.2
-
16
-
-
0021712941
-
Empiric comparison of multivariate analytic techniques: advantages and disadvantages of recursive partitioning analysis
-
Cook EF, Goldman L, (1984) Empiric comparison of multivariate analytic techniques: advantages and disadvantages of recursive partitioning analysis. J Chronic Dis 37: 721-731.
-
(1984)
J Chronic Dis
, vol.37
, pp. 721-731
-
-
Cook, E.F.1
Goldman, L.2
-
17
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, et al. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
-
18
-
-
78951482208
-
Deconstructing the molecular portraits of breast cancer
-
Prat A, Perou CM, (2011) Deconstructing the molecular portraits of breast cancer. Mol Oncol 5: 5-23.
-
(2011)
Mol Oncol
, vol.5
, pp. 5-23
-
-
Prat, A.1
Perou, C.M.2
-
19
-
-
27644506613
-
Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression
-
Varambally S, Yu J, Laxman B, Rhodes DR, Mehra R, et al. (2005) Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Cancer Cell 8: 393-406.
-
(2005)
Cancer Cell
, vol.8
, pp. 393-406
-
-
Varambally, S.1
Yu, J.2
Laxman, B.3
Rhodes, D.R.4
Mehra, R.5
-
20
-
-
62249201284
-
Chronic pancreatitis and the differential diagnosis versus pancreatic cancer
-
Kloppel G, Adsay NV, (2009) Chronic pancreatitis and the differential diagnosis versus pancreatic cancer. Arch Pathol Lab Med 133: 382-387.
-
(2009)
Arch Pathol Lab Med
, vol.133
, pp. 382-387
-
-
Kloppel, G.1
Adsay, N.V.2
-
21
-
-
34250217743
-
Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays
-
Chen S, LaRoche T, Hamelinck D, Bergsma D, Brenner D, et al. (2007) Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays. Nat Methods 4: 437-444.
-
(2007)
Nat Methods
, vol.4
, pp. 437-444
-
-
Chen, S.1
LaRoche, T.2
Hamelinck, D.3
Bergsma, D.4
Brenner, D.5
-
22
-
-
70349159332
-
The prevalence and nature of glycan alterations on specific proteins in pancreatic cancer patients revealed using antibody-lectin sandwich arrays
-
Yue T, Goldstein IJ, Hollingsworth MA, Kaul K, Brand RE, et al. (2009) The prevalence and nature of glycan alterations on specific proteins in pancreatic cancer patients revealed using antibody-lectin sandwich arrays. Mol Cell Proteomics 8: 1697-1707.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1697-1707
-
-
Yue, T.1
Goldstein, I.J.2
Hollingsworth, M.A.3
Kaul, K.4
Brand, R.E.5
-
23
-
-
77951642949
-
Antibody Microarrays for Protein and Glycan Detection
-
In: Van Eyk J, Dunn M, editors. Weinheim, Germany: Wiley, VCH
-
Chen S, Haab BB (2007) Antibody Microarrays for Protein and Glycan Detection. In: Van Eyk J, Dunn M, editors. Clinical Proteomics. Weinheim, Germany: Wiley, VCH.
-
(2007)
Clinical Proteomics
-
-
Chen, S.1
Haab, B.B.2
-
24
-
-
77951636054
-
Antibody-lectin sandwich arrays for biomarker and glycobiology studies
-
Haab BB, (2010) Antibody-lectin sandwich arrays for biomarker and glycobiology studies. Expert Rev Proteomics 7: 9-11.
-
(2010)
Expert Rev Proteomics
, vol.7
, pp. 9-11
-
-
Haab, B.B.1
-
25
-
-
77649155279
-
Antibody-array interaction mapping (AAIM): A new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma
-
Bergsma D, Buchweitz J, Chen S, Gerszten R, Haab B, (2010) Antibody-array interaction mapping (AAIM): A new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma. Molecular Cellular Proteomics 9: 446-456.
-
(2010)
Molecular Cellular Proteomics
, vol.9
, pp. 446-456
-
-
Bergsma, D.1
Buchweitz, J.2
Chen, S.3
Gerszten, R.4
Haab, B.5
-
26
-
-
28244488742
-
Antibody microarray profiling reveals individual and combined serum proteins associated with pancreatic cancer
-
Orchekowski R, Hamelinck D, Li L, Gliwa E, vanBrocklin M, et al. (2005) Antibody microarray profiling reveals individual and combined serum proteins associated with pancreatic cancer. Cancer Res 65: 11193-11202.
-
(2005)
Cancer Res
, vol.65
, pp. 11193-11202
-
-
Orchekowski, R.1
Hamelinck, D.2
Li, L.3
Gliwa, E.4
vanBrocklin, M.5
-
27
-
-
77951665680
-
Glycosylation Variants of Mucins and CEACAMs as Candidate Biomarkers for the Diagnosis of Pancreatic Cystic Neoplasms
-
Haab BB, Porter A, Yue T, Li L, Scheiman J, et al. (2010) Glycosylation Variants of Mucins and CEACAMs as Candidate Biomarkers for the Diagnosis of Pancreatic Cystic Neoplasms. Annals of Surgery 251: 937-945.
-
(2010)
Annals of Surgery
, vol.251
, pp. 937-945
-
-
Haab, B.B.1
Porter, A.2
Yue, T.3
Li, L.4
Scheiman, J.5
-
28
-
-
77958516882
-
Glycogene Expression Alterations Associated with Pancreatic Cancer Epithelial-Mesenchymal Transition in Complementary Model Systems
-
Maupin K, Sinha A, Eugster E, Miller J, Ross J, et al. (2010) Glycogene Expression Alterations Associated with Pancreatic Cancer Epithelial-Mesenchymal Transition in Complementary Model Systems. PLoS ONE 5: e13002.
-
(2010)
PLoS ONE
, vol.5
-
-
Maupin, K.1
Sinha, A.2
Eugster, E.3
Miller, J.4
Ross, J.5
-
29
-
-
65249091988
-
Mucin glycosylation is altered by pro-inflammatory signaling in pancreatic-cancer cells
-
Wu YM, Nowack DD, Omenn GS, Haab BB, (2009) Mucin glycosylation is altered by pro-inflammatory signaling in pancreatic-cancer cells. J Proteome Res 8: 1876-1886.
-
(2009)
J Proteome Res
, vol.8
, pp. 1876-1886
-
-
Wu, Y.M.1
Nowack, D.D.2
Omenn, G.S.3
Haab, B.B.4
-
30
-
-
84855283454
-
Enhanced discrimination of malignant from benign pancreatic disease by measuring the CA 19-9 antigen on specific protein carriers
-
Yue T, Maupin KA, Fallon B, Li L, Partyka K, et al. (2011) Enhanced discrimination of malignant from benign pancreatic disease by measuring the CA 19-9 antigen on specific protein carriers. PLoS ONE 6: e29180.
-
(2011)
PLoS ONE
, vol.6
-
-
Yue, T.1
Maupin, K.A.2
Fallon, B.3
Li, L.4
Partyka, K.5
-
31
-
-
80052468511
-
Identification of blood-protein carriers of the CA 19-9 antigen and characterization of prevalence in pancreatic diseases
-
Yue T, Partyka K, Maupin KA, Hurley M, Andrews P, et al. (2011) Identification of blood-protein carriers of the CA 19-9 antigen and characterization of prevalence in pancreatic diseases. Proteomics 11: 3665-3674.
-
(2011)
Proteomics
, vol.11
, pp. 3665-3674
-
-
Yue, T.1
Partyka, K.2
Maupin, K.A.3
Hurley, M.4
Andrews, P.5
-
32
-
-
84864005063
-
Diverse monoclonal antibodies against the CA 19-9 antigen show variation in binding specificity with consequences for clinical interpretation
-
Partyka K, Maupin KA, Brand RE, Haab BB, (2012) Diverse monoclonal antibodies against the CA 19-9 antigen show variation in binding specificity with consequences for clinical interpretation. Proteomics 12: 2212-2220.
-
(2012)
Proteomics
, vol.12
, pp. 2212-2220
-
-
Partyka, K.1
Maupin, K.A.2
Brand, R.E.3
Haab, B.B.4
-
33
-
-
33947668471
-
Systematic review of carbohydrate antigen (CA 19-9) as a biochemical marker in the diagnosis of pancreatic cancer
-
Goonetilleke KS, Siriwardena AK, (2007) Systematic review of carbohydrate antigen (CA 19-9) as a biochemical marker in the diagnosis of pancreatic cancer. Eur J Surg Oncol 33: 266-270.
-
(2007)
Eur J Surg Oncol
, vol.33
, pp. 266-270
-
-
Goonetilleke, K.S.1
Siriwardena, A.K.2
-
34
-
-
34547759863
-
High-throughput carbohydrate microarray profiling of 27 antibodies demonstrates widespread specificity problems
-
Manimala JC, Roach TA, Li Z, Gildersleeve JC, (2007) High-throughput carbohydrate microarray profiling of 27 antibodies demonstrates widespread specificity problems. Glycobiology 17: 17C-23C.
-
(2007)
Glycobiology
, vol.17
-
-
Manimala, J.C.1
Roach, T.A.2
Li, Z.3
Gildersleeve, J.C.4
-
35
-
-
77949904604
-
A motif-based analysis of glycan array data to determine the specificities of glycan-binding proteins
-
Porter A, Yue T, Heeringa L, Day S, Suh E, et al. (2010) A motif-based analysis of glycan array data to determine the specificities of glycan-binding proteins. Glycobiology 20: 369-380.
-
(2010)
Glycobiology
, vol.20
, pp. 369-380
-
-
Porter, A.1
Yue, T.2
Heeringa, L.3
Day, S.4
Suh, E.5
-
36
-
-
0032760682
-
Antigen structure and genetic basis of histo-blood groups A, B and O: their changes associated with human cancer
-
Hakomori S, (1999) Antigen structure and genetic basis of histo-blood groups A, B and O: their changes associated with human cancer. Biochim Biophys Acta 1473: 247-266.
-
(1999)
Biochim Biophys Acta
, vol.1473
, pp. 247-266
-
-
Hakomori, S.1
-
37
-
-
77749279468
-
Boosting with missing predictors
-
Wang CY, Feng Z, (2010) Boosting with missing predictors. Biostatistics 11: 195-212.
-
(2010)
Biostatistics
, vol.11
, pp. 195-212
-
-
Wang, C.Y.1
Feng, Z.2
|