메뉴 건너뛰기




Volumn 6, Issue 3, 2013, Pages 193-200

Development of microsatellite markers in Cocos nucifera and their application in evaluating the level of genetic diversity of Cocos nucifera

Author keywords

Cocos nucifera; Genetic diversity; Illumina sequencing; Population stucture; Ssr

Indexed keywords

COCOS NUCIFERA;

EID: 84878637184     PISSN: 18360661     EISSN: 18363644     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (25)

References (34)
  • 1
    • 0028084110 scopus 로고
    • Evaluation of tall coconut (Cocos nucifera L ) genotypes within the Nigerian coconut germplasm bank
    • Akpan EEJ (1994) Evaluation of tall coconut (Cocos nucifera L.) genotypes within the Nigerian coconut germplasm bank. Oleagineux. 49: 13-20.
    • (1994) Oleagineux , vol.49 , pp. 13-20
    • Akpan, E.E.J.1
  • 2
    • 0030917338 scopus 로고    scopus 로고
    • RAPD analysis of South Pacific coconut palm populations
    • Ashburner GR, Thompson WK, Halloran GM (1997) RAPD analysis of South Pacific coconut palm populations. Crop Sci. 37: 992-997.
    • (1997) Crop Sci , vol.37 , pp. 992-997
    • Ashburner, G.R.1    Thompson, W.K.2    Halloran, G.M.3
  • 3
    • 79959455582 scopus 로고    scopus 로고
    • eds IPGRI-Regional Office for Asia, the Pacific and Oceania, Serdang, Malaysia
    • Batugal P, Rao V, Oliver J, eds (2005) Coconut Genetic Resources. IPGRI-Regional Office for Asia, the Pacific and Oceania, Serdang, Malaysia.
    • (2005) Coconut Genetic Resources
    • Batugal, P.1    Rao, V.2    Oliver, J.3
  • 4
    • 60649087325 scopus 로고    scopus 로고
    • Coconut (Cocos nucifera L) DNA studies support the hypothesis of an ancient Austronesian migration from Southeast Asia to American
    • Baudouin L, Lebrun P (2009) Coconut (Cocos nucifera L.) DNA studies support the hypothesis of an ancient Austronesian migration from Southeast Asia to American. Genet Resour Crop Ev. 56: 257-262.
    • (2009) Genet Resour Crop Ev , vol.56 , pp. 257-262
    • Baudouin, L.1    Lebrun, P.2
  • 5
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 6
    • 36849035794 scopus 로고    scopus 로고
    • MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design
    • Faircloth BC (2008) MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol. 8: 92-94.
    • (2008) Mol Ecol , vol.8 , pp. 92-94
    • Faircloth, B.C.1
  • 7
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus data: linked loci and correlated allele frequencies. Genetics. 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 8
    • 84875553199 scopus 로고    scopus 로고
    • RNA-Seq Analysis of Cocos nucifera: Transcriptome sequencing and De Novo assembly for Subsequent Functional Genomics Approaches
    • Fan H, Xiao Y, Yang Y, Xia W, Mason AS, Xia Z, Qiao F, Zhao S, Tang H (2013) RNA-Seq Analysis of Cocos nucifera: Transcriptome sequencing and De Novo assembly for Subsequent Functional Genomics Approaches. PLOS ONE. 8: e59997.
    • (2013) PLOS ONE , vol.8
    • Fan, H.1    Xiao, Y.2    Yang, Y.3    Xia, W.4    Mason, A.S.5    Xia, Z.6    Qiao, F.7    Zhao, S.8    Tang, H.9
  • 9
    • 79959440825 scopus 로고    scopus 로고
    • Independent origins of cultivated coconut (Cocos nucifera L) in the old world tropics
    • Gunn BF, Baudouin L, Olsen KM (2011) Independent origins of cultivated coconut (Cocos nucifera L.) in the old world tropics. PLOS ONE. 6: e21143.
    • (2011) PLOS ONE , vol.6
    • Gunn, B.F.1    Baudouin, L.2    Olsen, K.M.3
  • 10
    • 84950379820 scopus 로고
    • Evolution, dissemination and classification of Cocos nucifera L
    • Harries HC (1978) Evolution, dissemination and classification of Cocos nucifera L. Bot Rev. 44: 265-320.
    • (1978) Bot Rev , vol.44 , pp. 265-320
    • Harries, H.C.1
  • 11
    • 2642604907 scopus 로고
    • Germination and taxonomy of the coconut
    • Harries HC (1981) Germination and taxonomy of the coconut. Ann Bot. 48: 873-883.
    • (1981) Ann Bot , vol.48 , pp. 873-883
    • Harries, H.C.1
  • 12
    • 0025600536 scopus 로고
    • Malesian origin for a domestic: Cocos nucifera
    • In: Bass P, Kalkman K, Geesink R, eds. Dordrecht, The Netherlands: Kluwer Academic Publishers
    • Harries HC (1990) Malesian origin for a domestic: Cocos nucifera. In: Bass P, Kalkman K, Geesink R, eds. The Plant Diversity of Malesia. Dordrecht, The Netherlands: Kluwer Academic Publishers. pp 351-357.
    • (1990) The Plant Diversity of Malesia , pp. 351-357
    • Harries, H.C.1
  • 13
    • 17644407717 scopus 로고    scopus 로고
    • The dual origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from maternal and paternal line ages
    • Hurles M, Skyes B, Jobling M, Forster P (2005) The dual origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from maternal and paternal line ages. Am J Hum Genet. 76: 894-901.
    • (2005) Am J Hum Genet , vol.76 , pp. 894-901
    • Hurles, M.1    Skyes, B.2    Jobling, M.3    Forster, P.4
  • 15
    • 0031981285 scopus 로고    scopus 로고
    • Genetic diversity in coconut (Cocos nucifera L ) revealed by restriction fragment length polymorphism (RFLP) markers
    • Lebrun P, N'Cho YP, Seguin M, Grivet L, Baudouin L (1998) Genetic diversity in coconut (Cocos nucifera L.) revealed by restriction fragment length polymorphism (RFLP) markers. Euphytica. 101: 103-108.
    • (1998) Euphytica , vol.101 , pp. 103-108
    • Lebrun, P.1    N'Cho, Y.P.2    Seguin, M.3    Grivet, L.4    Baudouin, L.5
  • 16
    • 84878667074 scopus 로고    scopus 로고
    • Genetic diversity of coconut cultivars in China by microsatellite (SSR) markers
    • Liu X, Tang H, Li D, Hou L (2011) Genetic diversity of coconut cultivars in China by microsatellite (SSR) markers. Mole Plant Breed. 2: 83-91.
    • (2011) Mole Plant Breed , vol.2 , pp. 83-91
    • Liu, X.1    Tang, H.2    Li, D.3    Hou, L.4
  • 17
    • 0013682986 scopus 로고
    • The coconut
    • Indian central coconut committee. Government press, Madra, India
    • Menon KPV, Pandalai KM (1958) The coconut. A monograph. Indian central coconut committee. Government press, Madra, India. pp 86-102.
    • (1958) A monograph , pp. 86-102
    • Menon, K.P.V.1    Pandalai, K.M.2
  • 18
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markets in plants
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markets in plants. Plant J. 3: 175-182.
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 19
    • 0027158760 scopus 로고
    • A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications
    • Neal Stewart C, Via LE (1993) A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques. 14: 748-749.
    • (1993) Biotechniques , vol.14 , pp. 748-749
    • Neal Stewart, C.1    Via, L.E.2
  • 20
    • 0031978463 scopus 로고    scopus 로고
    • Evaluating genetic relationships between indigenous coconut (Cocos nucifera L) accessions from Sri Lanka by means of AFLP profiling
    • Perera AU, Russell JR, Provan J, McNicol JW, Powell W (1998) Evaluating genetic relationships between indigenous coconut (Cocos nucifera L.) accessions from Sri Lanka by means of AFLP profiling. Theor Appl Genet. 96: 545-550.
    • (1998) Theor Appl Genet , vol.96 , pp. 545-550
    • Perera, A.U.1    Russell, J.R.2    Provan, J.3    McNicol, J.W.4    Powell, W.5
  • 21
    • 0043205972 scopus 로고    scopus 로고
    • Studying genetic relationships among coconut varieties/populations using microsatellite markers
    • Perera I, Russell JR, Provan J, Powell W (2003) Studying genetic relationships among coconut varieties/populations using microsatellite markers. Eupytica. 132: 212-128.
    • (2003) Eupytica , vol.132 , pp. 212-228
    • Perera, I.1    Russell, J.R.2    Provan, J.3    Powell, W.4
  • 23
    • 0030183057 scopus 로고    scopus 로고
    • Polymorphism revealed by simple sequence repeats
    • Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
    • (1996) Trends Plant Sci , vol.1 , pp. 215-222
    • Powell, W.1    Machray, G.C.2    Provan, J.3
  • 24
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephen M, Donnelly (2000) Inference of population structure using multilocus genotype data. Genetics. 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephen, M.2    Donnelly3
  • 25
    • 84871670418 scopus 로고    scopus 로고
    • Development of a RAPD-derived SCAR marker associated with tall-type palm trait in coconut
    • Rajesh MK, Jerard BA, Preethi P, Thomas RJ, Fayas TP, Rachana KE (2013) Development of a RAPD-derived SCAR marker associated with tall-type palm trait in coconut. Sci Hortic. 150: 312-316.
    • (2013) Sci Hortic , vol.150 , pp. 312-316
    • Rajesh, M.K.1    Jerard, B.A.2    Preethi, P.3    Thomas, R.J.4    Fayas, T.P.5    Rachana, K.E.6
  • 26
    • 77954291942 scopus 로고    scopus 로고
    • Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader Mnemiopsis leidyi (Ctenophora)
    • Reusch TB, Bolte S, Sparwel M, Moss AG, Javidpour J (2010) Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora). Mol Ecol. 19: 2690-2699.
    • (2010) Mol Ecol , vol.19 , pp. 2690-2699
    • Reusch, T.B.1    Bolte, S.2    Sparwel, M.3    Moss, A.G.4    Javidpour, J.5
  • 29
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • In S. Krawetz and S. Misener [eds.], Humana Press, Totowa, New Jersey, USA
    • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In S. Krawetz and S. Misener [eds.], Bioinformatics methods and protocols: Methods in molecular biology, 365-386. Humana Press, Totowa, New Jersey, USA.
    • (2000) Bioinformatics methods and protocols: Methods in molecular biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 30
    • 0031459533 scopus 로고    scopus 로고
    • Biometric analysis on diversity of coconut palm: cultivar classification by botanical and agronomical traits
    • Sugimura Y, Itano M, Salud CD, Otsuji K, Yamaguchi H (1997) Biometric analysis on diversity of coconut palm: cultivar classification by botanical and agronomical traits. Euphytica. 98: 29-35.
    • (1997) Euphytica , vol.98 , pp. 29-35
    • Sugimura, Y.1    Itano, M.2    Salud, C.D.3    Otsuji, K.4    Yamaguchi, H.5
  • 31
    • 84865964712 scopus 로고    scopus 로고
    • Genetic diversity of rice cultivars by microsatellite markers tightly linked to cooking and eating quality
    • Tabkhkar N, Rabiei B, Sabouri A (2012) Genetic diversity of rice cultivars by microsatellite markers tightly linked to cooking and eating quality. Aust J Crop Sci. 6: 980-985.
    • (2012) Aust J Crop Sci , vol.6 , pp. 980-985
    • Tabkhkar, N.1    Rabiei, B.2    Sabouri, A.3
  • 32
    • 32644480087 scopus 로고    scopus 로고
    • Characteristics of soil fauna community in the dongjiao coconut plantation ecosystem in Hainan China
    • Tang BN, Tang M, Chen CF, Qiu PH, Liu Q, Wang M, Li CE (2006) Characteristics of soil fauna community in the dongjiao coconut plantation ecosystem in Hainan, China. Acta Ecologica Sinica, 26: 26-32.
    • (2006) Acta Ecologica Sinica , vol.26 , pp. 26-32
    • Tang, B.N.1    Tang, M.2    Chen, C.F.3    Qiu, P.H.4    Liu, Q.5    Wang, M.6    Li, C.E.7
  • 33
    • 0034009863 scopus 로고    scopus 로고
    • An analysis of genetic diversity of the coconut (Cocos nucifera) population from across the geographic range using sequence-tagged microsatellite (SSRs) and AFLPs
    • Teulat B, Aldam C, Trehin R, Lebrun P, Barker JHA, Arnold GM, Karp A, Baudouin L, Rognon F (2000) An analysis of genetic diversity of the coconut (Cocos nucifera) population from across the geographic range using sequence-tagged microsatellite (SSRs) and AFLPs. Theor Appl Genet. 100: 764-771.
    • (2000) Theor Appl Genet , vol.100 , pp. 764-771
    • Teulat, B.1    Aldam, C.2    Trehin, R.3    Lebrun, P.4    Barker, J.H.A.5    Arnold, G.M.6    Karp, A.7    Baudouin, L.8    Rognon, F.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.