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Volumn 8, Issue 5, 2013, Pages

Experimental Evolution Reveals Genome-Wide Spectrum and Dynamics of Mutations in the Rice Blast Fungus, Magnaporthe oryzae

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CULTURE MEDIUM; DNA SEQUENCE; FUNGAL GENOME; FUNGAL VIRULENCE; FUNGUS CULTURE; GENE INSERTION; GENE MUTATION; GENE SEQUENCE; GENETIC DRIFT; GENETIC SELECTION; GENETIC VARIABILITY; HIGH THROUGHPUT SEQUENCING; IN VITRO STUDY; MAGNAPORTHE ORYZAE; NONHUMAN; OXIDATIVE STRESS; PHENOTYPE; ULTRAVIOLET RADIATION;

EID: 84878611860     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0065416     Document Type: Article
Times cited : (21)

References (32)
  • 1
    • 41649094556 scopus 로고    scopus 로고
    • Marker stability throughout 400 days of in vitro hyphal growth in the filamentous ascomycete, Sclerotinia sclerotiorum
    • Kohn LM, Schaffer MR, Anderson JB, Grunwald NJ, (2008) Marker stability throughout 400 days of in vitro hyphal growth in the filamentous ascomycete, Sclerotinia sclerotiorum. Fungal Genet Biol 45: 613-617.
    • (2008) Fungal Genet Biol , vol.45 , pp. 613-617
    • Kohn, L.M.1    Schaffer, M.R.2    Anderson, J.B.3    Grunwald, N.J.4
  • 2
    • 83455184572 scopus 로고    scopus 로고
    • Genetic stability of Magnaporthe oryzae during successive passages through rice plants and on artificial medium
    • Park S-Y, Chi M-H, Milgroom MG, Kim H, Han S-S, et al. (2011) Genetic stability of Magnaporthe oryzae during successive passages through rice plants and on artificial medium. The Plant Pathology Journal 26: 313-320.
    • (2011) The Plant Pathology Journal , vol.26 , pp. 313-320
    • Park, S.-Y.1    Chi, M.-H.2    Milgroom, M.G.3    Kim, H.4    Han, S.-S.5
  • 3
    • 20244366844 scopus 로고    scopus 로고
    • The genome sequence of the rice blast fungus Magnaporthe grisea
    • Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, et al. (2005) The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434: 980-986.
    • (2005) Nature , vol.434 , pp. 980-986
    • Dean, R.A.1    Talbot, N.J.2    Ebbole, D.J.3    Farman, M.L.4    Mitchell, T.K.5
  • 4
    • 0000407930 scopus 로고
    • cAMP Regulates Infection Structure Formation in the Plant Pathogenic Fungus Magnaporthe grisea
    • Lee YH, Dean RA, (1993) cAMP Regulates Infection Structure Formation in the Plant Pathogenic Fungus Magnaporthe grisea. Plant Cell 5: 693-700.
    • (1993) Plant Cell , vol.5 , pp. 693-700
    • Lee, Y.H.1    Dean, R.A.2
  • 5
    • 77955688246 scopus 로고    scopus 로고
    • Population dynamics of Pyricularia grisea during leaf and panicle blast stages in the same field
    • Han SS, Ra DS, Choi SH, Kim CK, (1997) Population dynamics of Pyricularia grisea during leaf and panicle blast stages in the same field. Korean J Plant Pathol 13: 408-415.
    • (1997) Korean J Plant Pathol , vol.13 , pp. 408-415
    • Han, S.S.1    Ra, D.S.2    Choi, S.H.3    Kim, C.K.4
  • 6
    • 74249095355 scopus 로고    scopus 로고
    • Homeobox transcription factors are required for conidiation and appressorium development in the rice blast fungus Magnaporthe oryzae
    • Kim S, Park SY, Kim KS, Rho HS, Chi MH, et al. (2009) Homeobox transcription factors are required for conidiation and appressorium development in the rice blast fungus Magnaporthe oryzae. PLoS Genet 5: e1000757.
    • (2009) PLoS Genet , vol.5
    • Kim, S.1    Park, S.Y.2    Kim, K.S.3    Rho, H.S.4    Chi, M.H.5
  • 7
    • 77955692641 scopus 로고    scopus 로고
    • Population structure and race variation of the rice blast fungus
    • Kang S, Lee Y-H, (2000) Population structure and race variation of the rice blast fungus. Plant Pathol J 16: 1-8.
    • (2000) Plant Pathol J , vol.16 , pp. 1-8
    • Kang, S.1    Lee, Y.-H.2
  • 8
    • 0035059327 scopus 로고    scopus 로고
    • Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene
    • Kang S, Lebrun MH, Farrall L, Valent B, (2001) Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol Plant Microbe Interact 14: 671-674.
    • (2001) Mol Plant Microbe Interact , vol.14 , pp. 671-674
    • Kang, S.1    Lebrun, M.H.2    Farrall, L.3    Valent, B.4
  • 10
    • 2942659270 scopus 로고    scopus 로고
    • Microbial evolution in laboratory environments
    • Adams J, (2004) Microbial evolution in laboratory environments. Research in Microbiology 155: 311-318.
    • (2004) Research in Microbiology , vol.155 , pp. 311-318
    • Adams, J.1
  • 12
  • 13
    • 75749103383 scopus 로고    scopus 로고
    • Rate, molecular spectrum, and consequences of human mutation
    • Lynch M, (2010) Rate, molecular spectrum, and consequences of human mutation. Proc Natl Acad Sci U S A 107: 961-968.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 961-968
    • Lynch, M.1
  • 14
    • 74849090833 scopus 로고    scopus 로고
    • The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
    • Ossowski S, Schneeberger K, Lucas-Lledo JI, Warthmann N, Clark RM, et al. (2010) The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327: 92-94.
    • (2010) Science , vol.327 , pp. 92-94
    • Ossowski, S.1    Schneeberger, K.2    Lucas-Lledo, J.I.3    Warthmann, N.4    Clark, R.M.5
  • 15
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, et al. (2009) Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461: 1243-1247.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5
  • 16
    • 0029931416 scopus 로고    scopus 로고
    • Estimate of the genomic mutation rate deleterious to overall fitness in E. coli
    • Kibota TT, Lynch M, (1996) Estimate of the genomic mutation rate deleterious to overall fitness in E. coli. Nature 381: 694-696.
    • (1996) Nature , vol.381 , pp. 694-696
    • Kibota, T.T.1    Lynch, M.2
  • 17
    • 34247578808 scopus 로고    scopus 로고
    • Mitotic recombination accelerates adaptation in the fungus Aspergillus nidulans
    • Schoustra SE, Debets AJ, Slakhorst M, Hoekstra RF, (2007) Mitotic recombination accelerates adaptation in the fungus Aspergillus nidulans. PLoS Genet 3: e68.
    • (2007) PLoS Genet , vol.3
    • Schoustra, S.E.1    Debets, A.J.2    Slakhorst, M.3    Hoekstra, R.F.4
  • 18
    • 33745462164 scopus 로고    scopus 로고
    • Evidence of Genetic Exchange by Parasexual Recombination and Genetic Analysis of Pathogenicity and Mating Type of Parasexual Recombinants in Rice Blast Fungus, Magnaporthe oryzae
    • Noguchi MT, Yasuda N, Fujita Y, (2006) Evidence of Genetic Exchange by Parasexual Recombination and Genetic Analysis of Pathogenicity and Mating Type of Parasexual Recombinants in Rice Blast Fungus, Magnaporthe oryzae. Phytopathology 96: 746-750.
    • (2006) Phytopathology , vol.96 , pp. 746-750
    • Noguchi, M.T.1    Yasuda, N.2    Fujita, Y.3
  • 19
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • Kao KC, Sherlock G, (2008) Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat Genet 40: 1499-1504.
    • (2008) Nat Genet , vol.40 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 20
    • 61849168524 scopus 로고    scopus 로고
    • Clonal interference, multiple mutations and adaptation in large asexual populations
    • Fogle CA, Nagle JL, Desai MM, (2008) Clonal interference, multiple mutations and adaptation in large asexual populations. Genetics 180: 2163-2173.
    • (2008) Genetics , vol.180 , pp. 2163-2173
    • Fogle, C.A.1    Nagle, J.L.2    Desai, M.M.3
  • 21
    • 0026692941 scopus 로고
    • Genetic organization of a repeated DNA sequence family in the rice blast fungus
    • Romao J, Hamer JE, (1992) Genetic organization of a repeated DNA sequence family in the rice blast fungus. Proc Natl Acad Sci U S A 89: 5316-5320.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 5316-5320
    • Romao, J.1    Hamer, J.E.2
  • 22
    • 0030606152 scopus 로고    scopus 로고
    • The Croonian Lecture, 1996: Endogeneous damage to DNA
    • Lindahl T, (1996) The Croonian Lecture, 1996: Endogeneous damage to DNA. Phil Trans R Soc Lond B 351: 1529-1538.
    • (1996) Phil Trans R Soc Lond B , vol.351 , pp. 1529-1538
    • Lindahl, T.1
  • 23
    • 0026591033 scopus 로고
    • Endogeneous oxidative damage of deoxycytidine in DNA
    • Wagner JR, Hu CC, Ames BN, (1992) Endogeneous oxidative damage of deoxycytidine in DNA. Proc Natl Acad Sci U S A 89: 3380-3384.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 3380-3384
    • Wagner, J.R.1    Hu, C.C.2    Ames, B.N.3
  • 24
    • 0032584107 scopus 로고    scopus 로고
    • Oxidized, deaminated cytosines are a source of C→T transitions in vivo
    • Kreutzer DA, Essigmann JM, (1998) Oxidized, deaminated cytosines are a source of C→T transitions in vivo. Proc Natl Acad Sci U S A 95: 3578-3582.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 3578-3582
    • Kreutzer, D.A.1    Essigmann, J.M.2
  • 25
    • 0036741619 scopus 로고    scopus 로고
    • Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea
    • Gao WM, Khang CH, Park SY, Lee YH, Kang SC, (2002) Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea. Genetics 162: 103-112.
    • (2002) Genetics , vol.162 , pp. 103-112
    • Gao, W.M.1    Khang, C.H.2    Park, S.Y.3    Lee, Y.H.4    Kang, S.C.5
  • 26
    • 67349116450 scopus 로고    scopus 로고
    • A Cdc42 ortholog is required for penetration and virulence of Magnaporthe grisea
    • Zheng W, Zhao ZY, Chen JS, Liu WD, Ke HY, et al. (2009) A Cdc42 ortholog is required for penetration and virulence of Magnaporthe grisea. Fungal Genetics and Biology 46: 450-460.
    • (2009) Fungal Genetics and Biology , vol.46 , pp. 450-460
    • Zheng, W.1    Zhao, Z.Y.2    Chen, J.S.3    Liu, W.D.4    Ke, H.Y.5
  • 27
    • 34047150746 scopus 로고    scopus 로고
    • Genome-wide functional analysis of pathogenicity genes in the rice blast fungus
    • Jeon J, Park SY, Chi MH, Choi J, Park J, et al. (2007) Genome-wide functional analysis of pathogenicity genes in the rice blast fungus. Nat Genet 39: 561-565.
    • (2007) Nat Genet , vol.39 , pp. 561-565
    • Jeon, J.1    Park, S.Y.2    Chi, M.H.3    Choi, J.4    Park, J.5
  • 28
    • 0025976160 scopus 로고
    • Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcrosses
    • Valent B, Farrall L, Chumley FG, (1991) Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcrosses. Genetics 127: 87-101.
    • (1991) Genetics , vol.127 , pp. 87-101
    • Valent, B.1    Farrall, L.2    Chumley, F.G.3
  • 30
    • 46649114758 scopus 로고    scopus 로고
    • Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
    • Keller O, Odronitz F, Stanke M, Kollmar M, Waack S, (2008) Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. BMC Bioinformatics 9: 278.
    • (2008) BMC Bioinformatics , vol.9 , pp. 278
    • Keller, O.1    Odronitz, F.2    Stanke, M.3    Kollmar, M.4    Waack, S.5
  • 31
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2


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