The emerging function of IQD proteins as scaffolds in cellular signaling and trafficking

Plant Signaling and Behavior

Volumn 8, Issue 6, 2013, Pages

  Abel, Steffen ^a,b,c   Bürstenbinder, Katharina ^a   Müller, Jens ^a  

^a LEIBNIZ INSTITUTE OF PLANT BIOCHEMISTRY   (Germany)

^b MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Calcium; Calmodulin binding; Cellular signaling; Cytoskeleton; IQ motif; Kinesin; Microtubules; Scaffold proteins

Indexed keywords

ARABIDOPSIS PROTEIN; CALCIUM; CALMODULIN; CALMODULIN BINDING PROTEIN; IQD1 PROTEIN, ARABIDOPSIS; KINESIN; MICROTUBULE ASSOCIATED PROTEIN;

ARABIDOPSIS; CALCIUM SIGNALING; CALMODULIN-BINDING; CELLULAR SIGNALING; CYTOSKELETON; IQ MOTIF; METABOLISM; MICROTUBULE; REVIEW; SCAFFOLD PROTEINS;

CALCIUM; CALMODULIN-BINDING; CELLULAR SIGNALING; CYTOSKELETON; IQ MOTIF; KINESIN; MICROTUBULES; SCAFFOLD PROTEINS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CALCIUM SIGNALING; CALMODULIN; CALMODULIN-BINDING PROTEINS; MICROTUBULE-ASSOCIATED PROTEINS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; LYCOPERSICON ESCULENTUM;

EID: 84878568274     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.24369     Document Type: Review

References (47)

1. Dodd AN, Kudla J, Sanders D. The language of calcium signaling. Annu Rev Plant Biol 2010; 61:593-620; PMID:20192754; http://dx.doi.org/10.1146/annurevarplant-070109-104628
2. Reddy AS, Ali GS, Celesnik H, Day IS. Coping with stresses: roles of calcium-and calcium/calmodulin-regulated gene expression. Plant Cell 2011; 23:2010-32; PMID:21642548; http://dx.doi.org/10.1105/tpc.111.084988
3. McCormack E, Tsai YC, Braam J. Handling calcium signaling: Arabidopsis CaMs and CMLs. Trends Plant Sci 2005; 10:383-9; PMID:16023399; http://dx.doi.org/10.1016/j.tplants.2005.07.001
4. Reddy AS, Ben-Hur A, Day IS. Experimental and computational approaches for the study of calmodulin interactions. Phytochemistry 2011; 72:1007-19; PMID:21338992; http://dx.doi.org/10.1016/j.phytochem.2010.12.022
5. Reddy VS, Reddy AS. Proteomics of calcium-signaling components in plants. Phytochemistry 2004; 65:1745-76; PMID:15276435; http://dx.doi.org/10.1016/j.phytochem.2004.04.033
6. Bouché N, Yellin A, Snedden WA, Fromm H. Plantspecific calmodulin-binding proteins. Annu Rev Plant Biol 2005; 56:435-66; PMID:15862103; http://dx.doi.org/10.1146/annurev.arplant.56.032604.144224
7. Rhoads AR, Friedberg F. Sequence motifs for calmodulin recognition. FASEB J 1997; 11:331-40; PMID:9141499
8. Bähler M, Rhoads A. Calmodulin signaling via the IQ motif. FEBS Lett 2002; 513:107-13; PMID:11911888; http://dx.doi.org/10.1016/S0014-5793(01)03239-2
9. Hoeflich KP, Ikura M. Calmodulin in action: diversity in target recognition and activation mechanisms. Cell 2002; 108:739-42; PMID:11955428; http://dx.doi.org/10.1016/S0092-8674(02)00682-7
10. Fischer C, Kugler A, Hoth S, Dietrich P. An IQ domain mediates the interaction with calmodulin in a plant cyclic nucleotide-gated channel. Plant Cell Physiol 2013; PMID:23385145; http://dx.doi.org/10.1093/pcp/pct021
11. Talke IN, Blaudez D, Maathuis FJ, Sanders D. CNGCs: prime targets of plant cyclic nucleotide signalling? Trends Plant Sci 2003; 8:286-93; PMID:12818663; http://dx.doi.org/10.1016/S1360-1385(03)00099-2
12. Zhou YP, Duan J, Fujibe T, Yamamoto KT, Tian CE. AtIQM1, a novel calmodulin-binding protein, is involved in stomatal movement in Arabidopsis. Plant Mol Biol 2012; 79:333-46; PMID:22572939; http://dx.doi.org/10.1007/s11103-012-9915-0
13. Yang T, Poovaiah BW. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem 2002; 277:45049-58; PMID:12218065; http://dx.doi.org/10.1074/jbc.M207941200
14. Bouché N, Scharlat A, Snedden W, Bouchez D, Fromm H. A novel family of calmodulin-binding transcription activators in multicellular organisms. J Biol Chem 2002; 277:21851-61; PMID:11925432; http://dx.doi.org/10.1074/jbc.M200268200
15. Reddy AS, Day IS. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Genome Biol 2001; 2:H0024; PMID:11516337; http://dx.doi.org/10.1186/gb-2001-2-7-research0024
16. Abel S, Savchenko T, Levy M. Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa. BMC Evol Biol 2005; 5:72; PMID:16368012; http://dx.doi.org/10.1186/1471-2148-5-72
17. Huang Z, Van Houten J, Gonzalez G, Xiao H, van der Knaap E. Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato. Mol Genet Genomics 2013; PMID:23371549; http://dx.doi.org/10.1007/s00438-013-0733-0
18. Chaudhary N, McMahon C, Blobel G. Primary structure of a human arginine-rich nuclear protein that colocalizes with spliceosome components. Proc Natl Acad Sci USA 1991; 88:8189-93; PMID:1896467; http://dx.doi.org/10.1073/pnas.88.18.8189
19. Califice S, Baurain D, Hanikenne M, Motte P. A single ancient origin for prototypical serine/arginine-rich splicing factors. Plant Physiol 2012; 158:546-60; PMID:22158759; http://dx.doi.org/10.1104/pp.111.189019
20. Wang Q, Grubb CD, Abel S. Direct analysis of single leaf disks for chemopreventive glucosinolates. Phytochem Anal 2002; 13:152-7; PMID:12099105; http://dx.doi.org/10.1002/pca.636
21. Levy M, Wang Q, Kaspi R, Parrella MP, Abel S. Arabidopsis IQD1, a novel calmodulin-binding nuclear protein, stimulates glucosinolate accumulation and plant defense. Plant J 2005; 43:79-96; PMID:15960618; http://dx.doi.org/10.1111/j.1365-313X.2005.02435.x
22. Grubb CD, Abel S. Glucosinolate metabolism and its control. Trends Plant Sci 2006; 11:89-100; PMID:16406306; http://dx.doi.org/10.1016/j.tplants.2005.12.006
23. Halkier BA, Gershenzon J. Biology and biochemistry of glucosinolates. Annu Rev Plant Biol 2006; 57:303-33; PMID:16669764; http://dx.doi.org/10.1146/annurev.arplant.57.032905.105228
24. Zentella R, Zhang ZL, Park M, Thomas SG, Endo A, Murase K, et al. Global analysis of della direct targets in early gibberellin signaling in Arabidopsis. Plant Cell 2007; 19:3037-57; PMID:17933900; http://dx.doi.org/10.1105/tpc.107.054999
25. Xiao H, Jiang N, Schaffner E, Stockinger EJ, van der Knaap E. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science 2008; 319:1527-30; PMID:18339939; http://dx.doi.org/10.1126/science.1153040
26. Wu S, Xiao H, Cabrera A, Meulia T, van der Knaap E. SUN regulates vegetative and reproductive organ shape by changing cell division patterns. Plant Physiol 2011; 157:1175-86; PMID:21921117; http://dx.doi.org/10.1104/pp.111.181065
27. Bürstenbinder K, Savchenko T, Müller J, Adamson AW, Stamm G, Kwong R, et al. Arabidopsis calmodulin-binding protein IQ67-domain 1 localizes to microtubules and interacts with kinesin light chain-related protein-1. J Biol Chem 2013; 288:1871-82; PMID:23204523; http://dx.doi.org/10.1074/jbc.M112.396200
28. Arabidopsis Interactome Mapping Consortium. Evidence for network evolution in an Arabidopsis interactome map. Science 2011; 333:601-7; PMID:21798944; http://dx.doi.org/10.1126/science.1203877
29. Drevensek S, Goussot M, Duroc Y, Christodoulidou A, Steyaert S, Schaefer E, et al. The Arabidopsis TRM1-TON1 interaction reveals a recruitment network common to plant cortical microtubule arrays and eukaryotic centrosomes. Plant Cell 2012; 24:178-91; PMID:22286137; http://dx.doi.org/10.1105/tpc.111.089748
30. Verhey KJ, Kaul N, Soppina V. Kinesin assembly and movement in cells. Annu Rev Biophys 2011; 40:267-88; PMID:21332353; http://dx.doi.org/10.1146/annurev-biophys-042910-155310.
31. rd. Linking molecular motors to membrane cargo. Curr Opin Cell Biol 2010; 22:479-87; PMID:20466533; http://dx.doi.org/10.1016/j.ceb.2010.04.008
32. Hirokawa N, Noda Y, Tanaka Y, Niwa S. Kinesin super-family motor proteins and intracellular transport. Nat Rev Mol Cell Biol 2009; 10:682-96; PMID:19773780; http://dx.doi.org/10.1038/nrm2774
33. Lee YR, Liu B. Cytoskeletal motors in Arabidopsis. Sixty-one kinesins and seventeen myosins. Plant Physiol 2004; 136:3877-83; PMID:15591445; http://dx.doi.org/10.1104/pp.104.052621
34. Lipka E, Müller S. Potential roles for Kinesins at the cortical division site. Front Plant Sci 2012; 3:158; PMID:22811684; http://dx.doi.org/10.3389/fpls.2012.00158
35. Schnapp BJ. Trafficking of signaling modules by kinesin motors. J Cell Sci 2003; 116:2125-35; PMID:12730289; http://dx.doi.org/10.1242/jcs.00488
36. Good MC, Zalatan JG, Lim WA. Scaffold proteins: hubs for controlling the flow of cellular information. Science 2011; 332:680-6; PMID:21551057; http://dx.doi.org/10.1126/science.1198701
37. Brown MD, Sacks DB. Protein scaffolds in MAP kinase signalling. Cell Signal 2009; 21:462-9; PMID:19091303; http://dx.doi.org/10.1016/j.cellsig.2008.11.013
38. Shannon KB. IQGAP family members in yeast, dictyostelium, and mammalian cells. Int J Cell Biol 2012; 2012:894817; PMID:22505937; http://dx.doi.org/10.1155/2012/894817
39. Brown MD, Sacks DB. IQGAP1 in cellular signaling: bridging the GAP. Trends Cell Biol 2006; 16:242-9; PMID:16595175; http://dx.doi.org/10.1016/j.tcb.2006.03.002
40. White CD, Brown MD, Sacks DB. IQGAPs in cancer: a family of scaffold proteins underlying tumorigenesis. FEBS Lett 2009; 583:1817-24; PMID:19433088; http://dx.doi.org/10.1016/j.febslet.2009.05.007
41. Kindler S, Wang H, Richter D, Tiedge H. RNA transport and local control of translation. Annu Rev Cell Dev Biol 2005; 21:223-45; PMID:16212494; http://dx.doi.org/10.1146/annurev.cellbio.21.122303.120653
42. Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, et al. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell 2005; 16:260-9; PMID:15496452; http://dx.doi.org/10.1091/mbc.E04-09-0791
43. Marchand V, Gaspar I, Ephrussi A. An intracellular transmission control protocol: assembly and transport of ribonucleoprotein complexes. Curr Opin Cell Biol 2012; 24:202-10; PMID:22278045; http://dx.doi.org/10.1016/j.ceb.2011.12.014
44. Scott MS, Boisvert FM, McDowall MD, Lamond AI, Barton GJ. Characterization and prediction of protein nucleolar localization sequences. Nucleic Acids Res 2010; 38:7388-99; PMID:20663773; http://dx.doi.org/10.1093/nar/gkq653
45. Arsova B, Schulze WX. Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. Front Plant Sci 2012; 3:132; PMID:22723801; http://dx.doi.org/10.3389/fpls.2012.00132
46. Koroleva OA, Gibson TM, Cramer R, Stain C. Glucosinolate-accumulating S-cells in Arabidopsis leaves and flower stalks undergo programmed cell death at early stages of differentiation. Plant J 2010; 64:456-69; PMID:20815819; http://dx.doi.org/10.1111/j.1365-313X.2010.04339.x
47. Bednarek P. Chemical warfare or modulators of defence responses-the function of secondary metabolites in plant immunity. Curr Opin Plant Biol 2012; 15:407-14; PMID:22445190; http://dx.doi.org/10.1016/j.pbi.2012.03.002