-
1
-
-
84883703281
-
New abundant microbial groups in aquatic hypersaline environments
-
Ghai R, Pašić L, Fernández AB, Martín-Cuadrado AB, Megumi C, et al. (2011) New abundant microbial groups in aquatic hypersaline environments. Sci Rep 1: 135.
-
(2011)
Sci Rep
, vol.1
, pp. 135
-
-
Ghai, R.1
Pašić, L.2
Fernández, A.B.3
Martín-Cuadrado, A.B.4
Megumi, C.5
-
2
-
-
84355162254
-
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
-
Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, et al. (2011) De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J 6: 81-93.
-
(2011)
ISME J
, vol.6
, pp. 81-93
-
-
Narasingarao, P.1
Podell, S.2
Ugalde, J.A.3
Brochier-Armanet, C.4
Emerson, J.B.5
-
3
-
-
33745161855
-
Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes
-
Maturrano L, Santos F, Rosselló-Mora R, Antón J, (2006) Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Appl Environ Microbiol 72: 3887-3895.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3887-3895
-
-
Maturrano, L.1
Santos, F.2
Rosselló-Mora, R.3
Antón, J.4
-
4
-
-
33845897093
-
Selective enrichment, isolation and molecular detection of Salinibacter and related extremely halophilic Bacteria from hypersaline environments
-
Elevi Bardavid R, Ionescu D, Oren A, Rainey FA, Hollen BJ, et al. (2007) Selective enrichment, isolation and molecular detection of Salinibacter and related extremely halophilic Bacteria from hypersaline environments. Hydrobiologia 576: 3-13.
-
(2007)
Hydrobiologia
, vol.576
, pp. 3-13
-
-
Elevi Bardavid, R.1
Ionescu, D.2
Oren, A.3
Rainey, F.A.4
Hollen, B.J.5
-
5
-
-
57349154223
-
Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber. Saline Systems
-
Antón J, Peña A, Santos F, Martínez-García M, Schmitt-Kopplin P, et al. (2008) Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber. Saline Systems. 4: 15.
-
(2008)
, vol.4
, pp. 15
-
-
Antón, J.1
Peña, A.2
Santos, F.3
Martínez-García, M.4
Schmitt-Kopplin, P.5
-
6
-
-
49249108531
-
Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey
-
Mutlu MB, Martinez-Garcia M, Santos F, Peña A, Guven K, et al. (2008) Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey. FEMS Microbiol Ecol 65: 474-483.
-
(2008)
FEMS Microbiol Ecol
, vol.65
, pp. 474-483
-
-
Mutlu, M.B.1
Martinez-Garcia, M.2
Santos, F.3
Peña, A.4
Guven, K.5
-
7
-
-
84862672984
-
Spatial and seasonal prokaryotic community dynamics in ponds of increasing salinity of Sfax solar saltern in Tunisia
-
Boujelben I, Gomariz M, Martinez-Garcia M, Santos F, Peña A, et al. (2012) Spatial and seasonal prokaryotic community dynamics in ponds of increasing salinity of Sfax solar saltern in Tunisia. Antonie van Leeuwenhoek 4: 845-857.
-
(2012)
Antonie Van Leeuwenhoek
, vol.4
, pp. 845-857
-
-
Boujelben, I.1
Gomariz, M.2
Martinez-Garcia, M.3
Santos, F.4
Peña, A.5
-
8
-
-
84874576307
-
Cell sorting analysis of geographically separated hypersaline environments
-
Zhaxybayeva O, Stenauskas R, Mohan NR, Papke RT, (2013) Cell sorting analysis of geographically separated hypersaline environments. Extremophiles 17: 265-275.
-
(2013)
Extremophiles
, vol.17
, pp. 265-275
-
-
Zhaxybayeva, O.1
Stenauskas, R.2
Mohan, N.R.3
Papke, R.T.4
-
9
-
-
70350724345
-
Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes
-
Vaisman N, Oren A, (2009) Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes. Int J Sys Evol Microbiol 59: 2571-2574.
-
(2009)
Int J Sys Evol Microbiol
, vol.59
, pp. 2571-2574
-
-
Vaisman, N.1
Oren, A.2
-
10
-
-
84863692706
-
Salinibacter iranicus sp. nov. and Salinibacter luteus sp. nov., isolated from a salt lake, and emended descriptions of the genus Salinibacter and of Salinibacter ruber
-
Makhdoumi-Kakhki A, Amoozegar MA, Ventosa A, (2012) Salinibacter iranicus sp. nov. and Salinibacter luteus sp. nov., isolated from a salt lake, and emended descriptions of the genus Salinibacter and of Salinibacter ruber. Int J Syst Evol Microbiol 62: 1521-1527.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 1521-1527
-
-
Makhdoumi-Kakhki, A.1
Amoozegar, M.A.2
Ventosa, A.3
-
11
-
-
18644367450
-
Intraspecific comparative analysis of the species Salinibacter ruber
-
Peña A, Valens M, Santos F, Buczolits S, Antón J, et al. (2005) Intraspecific comparative analysis of the species Salinibacter ruber. Extremophiles 9: 151-161.
-
(2005)
Extremophiles
, vol.9
, pp. 151-161
-
-
Peña, A.1
Valens, M.2
Santos, F.3
Buczolits, S.4
Antón, J.5
-
12
-
-
40249103778
-
Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber
-
Rosselló-Móra R, Lucio M, Peña A, Brito-Echeverría J, López-López A, et al. (2008) Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber. ISME J 2: 242-253.
-
(2008)
ISME J
, vol.2
, pp. 242-253
-
-
Rosselló-Móra, R.1
Lucio, M.2
Peña, A.3
Brito-Echeverría, J.4
López-López, A.5
-
13
-
-
77954084359
-
Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains
-
Peña A, Keeling H, Huertas-Cepas J, Santos F, Yarza P, et al. (2010) Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. ISME J 4: 882-895.
-
(2010)
ISME J
, vol.4
, pp. 882-895
-
-
Peña, A.1
Keeling, H.2
Huertas-Cepas, J.3
Santos, F.4
Yarza, P.5
-
14
-
-
0033916431
-
Extremely halophilic bacteria abundantly growing in crystallizer ponds from solar salterns. Appl Environ Microbiol
-
Antón J, Rosselló-Mora R, Rodríguez-Varela F, Amann R, (2000) Extremely halophilic bacteria abundantly growing in crystallizer ponds from solar salterns. Appl Environ Microbiol. 66: 3052-3057.
-
(2000)
, vol.66
, pp. 3052-3057
-
-
Antón, J.1
Rosselló-Mora, R.2
Rodríguez-Varela, F.3
Amann, R.4
-
15
-
-
0036200510
-
Salinibacter ruber gen. nov., sp. nov., a novel extremely halophilic member of the Bacteria from saltern crystallyzer ponds
-
Antón J, Oren A, Benlloch S, Rodríguez-Valera F, Amann R, et al. (2002) Salinibacter ruber gen. nov., sp. nov., a novel extremely halophilic member of the Bacteria from saltern crystallyzer ponds. Int J Sys Evol Microbiol 52: 485-491.
-
(2002)
Int J Sys Evol Microbiol
, vol.52
, pp. 485-491
-
-
Antón, J.1
Oren, A.2
Benlloch, S.3
Rodríguez-Valera, F.4
Amann, R.5
-
16
-
-
79951681083
-
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time Of Flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments
-
Munoz R, López-López A, Urdiain M, Moore ERB, Rosselló-Móra R, (2011) Evaluation of Matrix-Assisted Laser Desorption Ionization-Time Of Flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments. System Appl Microbiol 34: 69-75.
-
(2011)
System Appl Microbiol
, vol.34
, pp. 69-75
-
-
Munoz, R.1
López-López, A.2
Urdiain, M.3
Moore, E.R.B.4
Rosselló-Móra, R.5
-
17
-
-
84886453373
-
MALDI-TOF MS for microbial identification: years of experimental development to an established protocol
-
In: Shah HN, Gharbia SE, editors, John Wiley & Sons, London
-
Kallow W, Erhard M, Shah HN, Raptakis E, Welker M (2010) MALDI-TOF MS for microbial identification: years of experimental development to an established protocol. In: Shah HN, Gharbia SE, editors. Mass spectrometry for microbial proteomics, John Wiley & Sons, London. 255-276.
-
(2010)
Mass spectrometry for microbial proteomics
, pp. 255-276
-
-
Kallow, W.1
Erhard, M.2
Shah, H.N.3
Raptakis, E.4
Welker, M.5
-
19
-
-
35648962934
-
High-precision frequency measurements: indispensable tools at the core of the molecular-level analysis of complex systems
-
Hertkorn N, Ruecker C, Meringer M, Gugisch R, Frommberger M, et al. (2007) High-precision frequency measurements: indispensable tools at the core of the molecular-level analysis of complex systems. Anal Bioanal Chem 389: 1311-1327.
-
(2007)
Anal Bioanal Chem
, vol.389
, pp. 1311-1327
-
-
Hertkorn, N.1
Ruecker, C.2
Meringer, M.3
Gugisch, R.4
Frommberger, M.5
-
20
-
-
0037350844
-
Partial least squares for discrimination
-
Barker M, Rayens W, (2003) Partial least squares for discrimination. J Chemometrics 17: 166-173.
-
(2003)
J Chemometrics
, vol.17
, pp. 166-173
-
-
Barker, M.1
Rayens, W.2
-
21
-
-
34249335649
-
OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification
-
Bylesjö M, Rantalainen M, Cloarec O, Nicholson J, Holmes E, et al. (2006) OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification. J Chemometrics 20: 341-351.
-
(2006)
J Chemometrics
, vol.20
, pp. 341-351
-
-
Bylesjö, M.1
Rantalainen, M.2
Cloarec, O.3
Nicholson, J.4
Holmes, E.5
-
22
-
-
0036083139
-
Orthogonal projections to latent structures (O-PLS)
-
Trygg J, Wold S, (2002) Orthogonal projections to latent structures (O-PLS). J Chemometrics 16: 119-128.
-
(2002)
J Chemometrics
, vol.16
, pp. 119-128
-
-
Trygg, J.1
Wold, S.2
-
23
-
-
0037282744
-
O2-PLS, a two-block (X-Y) latent variable regression (LVR) method with an integral OSC filter
-
Trygg J, Wold S, (2002) O2-PLS, a two-block (X-Y) latent variable regression (LVR) method with an integral OSC filter. J Chemometrics 17: 53-64.
-
(2002)
J Chemometrics
, vol.17
, pp. 53-64
-
-
Trygg, J.1
Wold, S.2
-
25
-
-
84863676402
-
MassTRIX Reloaded: combined analysis and visualization of transcriptome and metabolome data
-
doi 10.1371/journal.pone.0039860
-
Wägele B, Witting M, Schmitt-Kopplin P, Suhre K, (2012) MassTRIX Reloaded: combined analysis and visualization of transcriptome and metabolome data. PLoS one 7: e39860 doi:10.1371/journal.pone.0039860.
-
(2012)
PLoS One
, vol.7
-
-
Wägele, B.1
Witting, M.2
Schmitt-Kopplin, P.3
Suhre, K.4
-
26
-
-
80054772517
-
Kendrick-analogous network visualisation of Ion Cyclotron Resonance Fourier Transform (FTICR) mass spectra: improved options to assign elemental compositions and to classify organic molecular complexity
-
Tziotis D, Hertkorn N, Schmitt-Kopplin P, (2011) Kendrick-analogous network visualisation of Ion Cyclotron Resonance Fourier Transform (FTICR) mass spectra: improved options to assign elemental compositions and to classify organic molecular complexity. Eur J Mass Spectrom 17: 415-421.
-
(2011)
Eur J Mass Spectrom
, vol.17
, pp. 415-421
-
-
Tziotis, D.1
Hertkorn, N.2
Schmitt-Kopplin, P.3
-
27
-
-
77956265931
-
Pulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious disease
-
Goering RV, (2010) Pulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious disease. Infect Genet Evol 10: 866-875.
-
(2010)
Infect Genet Evol
, vol.10
, pp. 866-875
-
-
Goering, R.V.1
-
28
-
-
0033764256
-
Ecology and evolution of bacterial microdiversity
-
Schloter M, Lebuhn M, Heulin T, Hartmann A, (2000) Ecology and evolution of bacterial microdiversity. FEMS Microbiol Rev 24: 647-660.
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 647-660
-
-
Schloter, M.1
Lebuhn, M.2
Heulin, T.3
Hartmann, A.4
-
29
-
-
0028060576
-
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases
-
McClelland M, Nelson M, Raschke E, (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 22: 3640-3659.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3640-3659
-
-
McClelland, M.1
Nelson, M.2
Raschke, E.3
-
30
-
-
53649091123
-
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting Gram-negative bacilli isolated from cystic fibrosis patients
-
Degand N, Carbonnelle E, Dauphin B, Beretti J-L, Bourgeois ML, et al. (2008) Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting Gram-negative bacilli isolated from cystic fibrosis patients. J Clin Microbiol 46: 3361-3367.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 3361-3367
-
-
Degand, N.1
Carbonnelle, E.2
Dauphin, B.3
Beretti, J.-L.4
Bourgeois, M.L.5
-
31
-
-
0036098562
-
Archaeal phylogeny based on ribosomal proteins
-
Matte-Tailliez O, Brochier C, Forterre P, Philippe H, (2002) Archaeal phylogeny based on ribosomal proteins. Mol Biol Evol 19: 631-639.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 631-639
-
-
Matte-Tailliez, O.1
Brochier, C.2
Forterre, P.3
Philippe, H.4
-
32
-
-
80052841892
-
Microbial metabolomics
-
Tang J, (2011) Microbial metabolomics. Curr Genomics 12: 391-403.
-
(2011)
Curr Genomics
, vol.12
, pp. 391-403
-
-
Tang, J.1
-
33
-
-
84891835832
-
Comparative lipidomics profiling of S. cerevisiae and four other hemiascomycetous yeasts
-
Hein EM, Hayen H, (2012) Comparative lipidomics profiling of S. cerevisiae and four other hemiascomycetous yeasts. Metabolites 2: 254-267.
-
(2012)
Metabolites
, vol.2
, pp. 254-267
-
-
Hein, E.M.1
Hayen, H.2
-
34
-
-
44249093491
-
Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity
-
Krug D, Zurek G, Revermann O, Vos M, Velicer GJ, et al. (2008) Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity. Appl Environ Microbiol 74: 3058-3068.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3058-3068
-
-
Krug, D.1
Zurek, G.2
Revermann, O.3
Vos, M.4
Velicer, G.J.5
-
35
-
-
79955521119
-
Response to adverse conditions in two strains of the extremely halophilic species Salinibacter ruber
-
Brito-Echeverría J, Lucio M, Lopez-Lopez A, Anton J, Schmitt-Kopplin P, et al. (2011) Response to adverse conditions in two strains of the extremely halophilic species Salinibacter ruber. Extremophiles 15: 379-389.
-
(2011)
Extremophiles
, vol.15
, pp. 379-389
-
-
Brito-Echeverría, J.1
Lucio, M.2
Lopez-Lopez, A.3
Anton, J.4
Schmitt-Kopplin, P.5
-
36
-
-
74049111972
-
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber
-
doi: 10.1186/1471-2164-10-570
-
Pašić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, et al. (2009) Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. BMC Genomics 10: 570 doi:---10.1186/1471-2164-10-570.
-
(2009)
BMC Genomics
, vol.10
, pp. 570
-
-
Pašić, L.1
Rodriguez-Mueller, B.2
Martin-Cuadrado, A.B.3
Mira, A.4
Rohwer, F.5
-
37
-
-
34547299728
-
Genomic plasticity in prokaryotes: the case of the square haloarchaeon
-
Cuadros-Orellana S, Martín-Cuadrado AB, Legault B, D'Auria G, Zhaxybayeva O, et al. (2007) Genomic plasticity in prokaryotes: the case of the square haloarchaeon. ISME J 1: 235-245.
-
(2007)
ISME J
, vol.1
, pp. 235-245
-
-
Cuadros-Orellana, S.1
Martín-Cuadrado, A.B.2
Legault, B.3
D'Auria, G.4
Zhaxybayeva, O.5
-
38
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
doi:10.1073/pnas.1203689109
-
Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, et al. (2012) Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci 109: doi:10.1073/pnas.1203689109.
-
(2012)
Proc Natl Acad Sci
, vol.109
-
-
Watrous, J.1
Roach, P.2
Alexandrov, T.3
Heath, B.S.4
Yang, J.Y.5
-
39
-
-
84862989705
-
A massively spectacular view of the chemical lives of microbes
-
Taxter MF, Kolter R, (2012) A massively spectacular view of the chemical lives of microbes. Proc Natl Acad Sci 109: 10128-10129.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 10128-10129
-
-
Taxter, M.F.1
Kolter, R.2
-
40
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
Waltrous J, Roach P, Alexandrov T, Heath BS, Yang JY, et al. (2012) Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci 109: E1743-E1752.
-
(2012)
Proc Natl Acad Sci
, vol.109
-
-
Waltrous, J.1
Roach, P.2
Alexandrov, T.3
Heath, B.S.4
Yang, J.Y.5
-
41
-
-
0038157501
-
Introduction to multi- and megavariate data analysis using the projection methods (PCA & PLS)
-
Eriksson L, Johansson E, Kettaneh-Wold N, Wold S (1999) Introduction to multi- and megavariate data analysis using the projection methods (PCA & PLS). Umeå:Umetrics AB 490 pp.
-
(1999)
Umea°:Umetrics AB
, pp. 490
-
-
Eriksson, L.1
Johansson, E.2
Kettaneh-Wold, N.3
Wold, S.4
-
42
-
-
0242693130
-
Bacterial membrane lipids: where do we stand?
-
Cronan JE, (2003) Bacterial membrane lipids: where do we stand?. Annu Rev Microbiol 57: 203-224.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 203-224
-
-
Cronan, J.E.1
-
43
-
-
84891836405
-
Analysis of glutathione-S-transferases from Arabidopsis in yeast
-
Krajewski M, Kanawati B, Fekete A, Kowalski N, Schmitt-Kopplin P, et al. (2012) Analysis of glutathione-S-transferases from Arabidopsis in yeast. Phytochemistry In press.
-
(2012)
Phytochemistry In press
-
-
Krajewski, M.1
Kanawati, B.2
Fekete, A.3
Kowalski, N.4
Schmitt-Kopplin, P.5
-
45
-
-
33846923183
-
Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork
-
Hertweck C, Luzhetskyy A, Rebets Y, Bechthold A, (2007) Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork. Nat Prod Rep 24: 162-190.
-
(2007)
Nat Prod Rep
, vol.24
, pp. 162-190
-
-
Hertweck, C.1
Luzhetskyy, A.2
Rebets, Y.3
Bechthold, A.4
-
46
-
-
84865832282
-
Ecological populations of bacteria act as socially units of antibiotic and resistance
-
Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, et al. (2012) Ecological populations of bacteria act as socially units of antibiotic and resistance. Science 337: 1228-1231.
-
(2012)
Science
, vol.337
, pp. 1228-1231
-
-
Cordero, O.X.1
Wildschutte, H.2
Kirkup, B.3
Proehl, S.4
Ngo, L.5
-
47
-
-
84868238641
-
Marine microbes see a sea of gradients
-
Stocker R, (2012) Marine microbes see a sea of gradients. Science 338: 628-633.
-
(2012)
Science
, vol.338
, pp. 628-633
-
-
Stocker, R.1
-
48
-
-
77956715798
-
Atomic force microscopy reveals microscale networks and possible symbioses among pelagic marine bacteria
-
Malfatti F, Azam F, (2010) Atomic force microscopy reveals microscale networks and possible symbioses among pelagic marine bacteria. Aquatic Microb Ecol 58: 1-14.
-
(2010)
Aquatic Microb Ecol
, vol.58
, pp. 1-14
-
-
Malfatti, F.1
Azam, F.2
-
49
-
-
80052961403
-
Metatranscriptomic analysis of extremely halophilic viral communities
-
Santos F, Moreno-Paz M, Meseguer I, López C, Rosselló-Mora R, et al. (2011) Metatranscriptomic analysis of extremely halophilic viral communities. ISME J 5: 1621-1633.
-
(2011)
ISME J
, vol.5
, pp. 1621-1633
-
-
Santos, F.1
Moreno-Paz, M.2
Meseguer, I.3
López, C.4
Rosselló-Mora, R.5
|