-
1
-
-
64149097786
-
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622.
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
-
2
-
-
41549160277
-
Modelling the limit of detection in real-time quantitative PCR
-
Burns M, Valdivia H, (2008) Modelling the limit of detection in real-time quantitative PCR. Eur Food Res Technol 226: 1513-1524.
-
(2008)
Eur Food Res Technol
, vol.226
, pp. 1513-1524
-
-
Burns, M.1
Valdivia, H.2
-
3
-
-
46649102061
-
A statistical approach for evaluation of PCR results to improve the practical limit of quantification (LOQ) of GMO analyses (SIMQUANT)
-
Berdal KG, Boydler C, Tengs T, Holst-Jensen A, (2008) A statistical approach for evaluation of PCR results to improve the practical limit of quantification (LOQ) of GMO analyses (SIMQUANT). Eur Food Res Technol 227: 1149-1157.
-
(2008)
Eur Food Res Technol
, vol.227
, pp. 1149-1157
-
-
Berdal, K.G.1
Boydler, C.2
Tengs, T.3
Holst-Jensen, A.4
-
4
-
-
0000909098
-
Roundup Ready (R) soybean event-specific real-time quantitative PCR assay and estimation of the practical detection and quantification limits in GMO analyses
-
Berdal KG, Holst-Jensen A, (2001) Roundup Ready (R) soybean event-specific real-time quantitative PCR assay and estimation of the practical detection and quantification limits in GMO analyses. Eur Food Res Technol 213: 432-438.
-
(2001)
Eur Food Res Technol
, vol.213
, pp. 432-438
-
-
Berdal, K.G.1
Holst-Jensen, A.2
-
5
-
-
51849139937
-
A simulation approach to assess the minimal number of real-time PCR replicates for GM quantification
-
Burns M, Valdivia H, (2008) A simulation approach to assess the minimal number of real-time PCR replicates for GM quantification. Eur Food Res Technol 227: 1721-1727.
-
(2008)
Eur Food Res Technol
, vol.227
, pp. 1721-1727
-
-
Burns, M.1
Valdivia, H.2
-
6
-
-
77953689713
-
The applicability of digital PCR for the assessment of detection limits in GMO analysis
-
Burns MJ, Burrell AM, Foy CA, (2010) The applicability of digital PCR for the assessment of detection limits in GMO analysis. Eur Food Res Technol 231: 353-362.
-
(2010)
Eur Food Res Technol
, vol.231
, pp. 353-362
-
-
Burns, M.J.1
Burrell, A.M.2
Foy, C.A.3
-
7
-
-
29244438450
-
Standardisation of data from real-time quantitative PCR methods - evaluation of outliers and comparison of calibration curves
-
Burns MJ, Nixon GJ, Foy CA, Harris N, (2005) Standardisation of data from real-time quantitative PCR methods- evaluation of outliers and comparison of calibration curves. BMC Biotechnol 5: 31.
-
(2005)
BMC Biotechnol
, vol.5
, pp. 31
-
-
Burns, M.J.1
Nixon, G.J.2
Foy, C.A.3
Harris, N.4
-
8
-
-
16544366468
-
Analysis and interpretation of data from real-time PCR trace detection methods using quantitation of GM soya as a model system
-
Burns MJ, Valdivia H, Harris N, (2004) Analysis and interpretation of data from real-time PCR trace detection methods using quantitation of GM soya as a model system. Anal Bioanal Chem 378: 1616-1623.
-
(2004)
Anal Bioanal Chem
, vol.378
, pp. 1616-1623
-
-
Burns, M.J.1
Valdivia, H.2
Harris, N.3
-
9
-
-
33748325739
-
Routes to improving the reliability of low level DNA analysis using real-time PCR
-
Ellison SLR, English CA, Burns MJ, Keer JT, (2006) Routes to improving the reliability of low level DNA analysis using real-time PCR. BMC Biotechnol 6: 31.
-
(2006)
BMC Biotechnol
, vol.6
, pp. 31
-
-
Ellison, S.L.R.1
English, C.A.2
Burns, M.J.3
Keer, J.T.4
-
10
-
-
28344434302
-
Data analysis and interpretation
-
In: Bustin SA, editor, La Jolla: International University Line
-
Bustin SA, Nolan T (2004) Data analysis and interpretation. In: Bustin SA, editor. A-Z of Quantitative PCR. La Jolla: International University Line. 442-492.
-
(2004)
A-Z of Quantitative PCR
, pp. 442-492
-
-
Bustin, S.A.1
Nolan, T.2
-
11
-
-
0029935969
-
Theoretical uncertainty of measurements using quantitative polymerase chain reaction
-
Peccoud J, Jacob C, (1996) Theoretical uncertainty of measurements using quantitative polymerase chain reaction. Biophys J 71: 101-108.
-
(1996)
Biophys J
, vol.71
, pp. 101-108
-
-
Peccoud, J.1
Jacob, C.2
-
12
-
-
59349118525
-
The Prime Technique: Real-time PCR Data Analysis
-
Kubista M, Sindelka R, (2007) The Prime Technique: Real-time PCR Data Analysis. GIT Laboratory Journal 9-10: 33-35.
-
(2007)
GIT Laboratory Journal
, vol.9-10
, pp. 33-35
-
-
Kubista, M.1
Sindelka, R.2
-
15
-
-
10944250544
-
Epidemiologic evaluation of measurement data in the presence of detection limits
-
Lubin JH, Colt JS, Camann D, Davis S, Cerhan JR, et al. (2004) Epidemiologic evaluation of measurement data in the presence of detection limits. Environ Health Perspect 112: 1691-1696.
-
(2004)
Environ Health Perspect
, vol.112
, pp. 1691-1696
-
-
Lubin, J.H.1
Colt, J.S.2
Camann, D.3
Davis, S.4
Cerhan, J.R.5
-
16
-
-
57449116313
-
Evaluation of regression methods when immunological measurements are constrained by detection limits
-
Uh HW, Hartgers FC, Yazdanbakhsh M, Houwing-Duistermaat JJ, (2008) Evaluation of regression methods when immunological measurements are constrained by detection limits. BMC immunology 9: 59.
-
(2008)
BMC Immunology
, vol.9
, pp. 59
-
-
Uh, H.W.1
Hartgers, F.C.2
Yazdanbakhsh, M.3
Houwing-Duistermaat, J.J.4
-
17
-
-
70350096117
-
Quantification of the bla(CMY-2) in feces from beef feedlot cattle administered three different doses of ceftiofur in a longitudinal controlled field trial
-
Alali WQ, Scott HM, Norby B, Gebreyes W, Loneragan GH, (2009) Quantification of the bla(CMY-2) in feces from beef feedlot cattle administered three different doses of ceftiofur in a longitudinal controlled field trial. Foodborne Pathog Dis 6: 917-924.
-
(2009)
Foodborne Pathog Dis
, vol.6
, pp. 917-924
-
-
Alali, W.Q.1
Scott, H.M.2
Norby, B.3
Gebreyes, W.4
Loneragan, G.H.5
-
18
-
-
34547736907
-
Impact of three ampicillin dosage regimens on selection of ampicillin resistance in Enterobacteriaceae and excretion of blaTEM genes in swine feces
-
Bibbal D, Dupouy V, Ferre JP, Toutain PL, Fayet O, et al. (2007) Impact of three ampicillin dosage regimens on selection of ampicillin resistance in Enterobacteriaceae and excretion of blaTEM genes in swine feces. Appl Environ Microbiol 73: 4785-4790.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4785-4790
-
-
Bibbal, D.1
Dupouy, V.2
Ferre, J.P.3
Toutain, P.L.4
Fayet, O.5
-
19
-
-
0035320660
-
Occurrence and diversity of tetracycline resistance genes in lagoons and groundwater underlying two swine production facilities
-
Chee-Sanford JC, Aminov RI, Krapac IJ, Garrigues-Jeanjean N, Mackie RI, (2001) Occurrence and diversity of tetracycline resistance genes in lagoons and groundwater underlying two swine production facilities. Appl Environ Microbiol 67: 1494-1502.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1494-1502
-
-
Chee-Sanford, J.C.1
Aminov, R.I.2
Krapac, I.J.3
Garrigues-Jeanjean, N.4
Mackie, R.I.5
-
20
-
-
52649094859
-
Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin
-
Chen J, Fluharty FL, St-Pierre N, Morrison M, Yu Z, (2008) Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin. J Anim Sci 86: 2385-2391.
-
(2008)
J Anim Sci
, vol.86
, pp. 2385-2391
-
-
Chen, J.1
Fluharty, F.L.2
St-Pierre, N.3
Morrison, M.4
Yu, Z.5
-
21
-
-
34547174165
-
Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolides-lincosamides-streptogramin B in livestock manure and manure management systems
-
Chen J, Yu Z, Michel FC Jr, Wittum T, Morrison M, (2007) Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolides-lincosamides-streptogramin B in livestock manure and manure management systems. Appl Environ Microbiol 73: 4407-4416.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4407-4416
-
-
Chen, J.1
Yu, Z.2
Michel Jr., F.C.3
Wittum, T.4
Morrison, M.5
-
22
-
-
33846097291
-
Abundance of six tetracycline resistance genes in wastewater lagoons at cattle feedlots with different antibiotic use strategies
-
Peak N, Knapp CW, Yang RK, Hanfelt MM, Smith MS, et al. (2007) Abundance of six tetracycline resistance genes in wastewater lagoons at cattle feedlots with different antibiotic use strategies. Environ Microbiol 9: 143-151.
-
(2007)
Environ Microbiol
, vol.9
, pp. 143-151
-
-
Peak, N.1
Knapp, C.W.2
Yang, R.K.3
Hanfelt, M.M.4
Smith, M.S.5
-
23
-
-
10444238104
-
Quantification of tetracycline resistance genes in feedlot lagoons by real-time PCR
-
Smith MS, Yang RK, Knapp CW, Niu Y, Peak N, et al. (2004) Quantification of tetracycline resistance genes in feedlot lagoons by real-time PCR. Applied and Environ Microbiol 70: 7372-7377.
-
(2004)
Applied and Environ Microbiol
, vol.70
, pp. 7372-7377
-
-
Smith, M.S.1
Yang, R.K.2
Knapp, C.W.3
Niu, Y.4
Peak, N.5
-
24
-
-
36248989150
-
Response of antibiotics and resistance genes to high-intensity and low-intensity manure management
-
Storteboom HN, Kim SC, Doesken KC, Carlson KH, Davis JG, et al. (2007) Response of antibiotics and resistance genes to high-intensity and low-intensity manure management. J EnvironQual 36: 1695-1703.
-
(2007)
J EnvironQual
, vol.36
, pp. 1695-1703
-
-
Storteboom, H.N.1
Kim, S.C.2
Doesken, K.C.3
Carlson, K.H.4
Davis, J.G.5
-
25
-
-
32044438887
-
Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance
-
Yu Z, Michel FC Jr, Hansen G, Wittum T, Morrison M, (2005) Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance. Appl Environ Microbiol 71: 6926-6933.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6926-6933
-
-
Yu, Z.1
Michel Jr., F.C.2
Hansen, G.3
Wittum, T.4
Morrison, M.5
-
26
-
-
39049110690
-
Normalization
-
In: Dorak MT, editor, New York: Taylor & Francis
-
Huggett J, Dheda K, Bustin S (2006) Normalization. In: Dorak MT, editor. Real-time PCR. New York: Taylor & Francis. 83-92.
-
(2006)
Real-time PCR
, pp. 83-92
-
-
Huggett, J.1
Dheda, K.2
Bustin, S.3
-
27
-
-
57449118500
-
Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
-
Smith CJ, Osborn AM, (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67: 6-20.
-
(2009)
FEMS Microbiol Ecol
, vol.67
, pp. 6-20
-
-
Smith, C.J.1
Osborn, A.M.2
-
28
-
-
0001025775
-
Analysis of left-censored longitudinal data with application to viral load in HIV infection
-
Jacqmin-Gadda H, Thiebaut R, Chene G, Commenges D, (2000) Analysis of left-censored longitudinal data with application to viral load in HIV infection. Biostatistics 1: 355-368.
-
(2000)
Biostatistics
, vol.1
, pp. 355-368
-
-
Jacqmin-Gadda, H.1
Thiebaut, R.2
Chene, G.3
Commenges, D.4
-
29
-
-
0000175291
-
Estimation of Relationships for Limited Dependent-Variables
-
Tobin J, (1958) Estimation of Relationships for Limited Dependent-Variables. Econometrica 26: 24-36.
-
(1958)
Econometrica
, vol.26
, pp. 24-36
-
-
Tobin, J.1
-
31
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent F, Philippot L, Hallet S, Chaussod R, Germon JC, et al. (2001) DNA extraction from soils: Old bias for new microbial diversity analysis methods. Appl Environ Microbiol 67: 2354-2359.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
-
33
-
-
0006407254
-
WinBUGS - a Bayesian modelling framework: concepts, structure, and extensibility
-
Lunn DJ, Thomas A, Best N, Spiegelhalter D, (2000) WinBUGS - a Bayesian modelling framework: concepts, structure, and extensibility. Statistics and Computing 10: 325-337.
-
(2000)
Statistics and Computing
, vol.10
, pp. 325-337
-
-
Lunn, D.J.1
Thomas, A.2
Best, N.3
Spiegelhalter, D.4
-
34
-
-
13444302396
-
R2WinBUGS: A package for running WinBUGS from R. J Stat Softw
-
Sturtz S, Ligges U, Gelman A, (2005) R2WinBUGS: A package for running WinBUGS from R. J Stat Softw. 12: 1-16.
-
(2005)
, vol.12
, pp. 1-16
-
-
Sturtz, S.1
Ligges, U.2
Gelman, A.3
-
35
-
-
33845891920
-
The design of simulation studies in medical statistics
-
Burton A, Altman DG, Royston P, Holder RL, (2006) The design of simulation studies in medical statistics. Stat Med 25: 4279-4292.
-
(2006)
Stat Med
, vol.25
, pp. 4279-4292
-
-
Burton, A.1
Altman, D.G.2
Royston, P.3
Holder, R.L.4
-
37
-
-
2442616728
-
Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers
-
Vanhoutte T, Huys G, De Brandt E, Swings J, (2004) Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol 48: 437-446.
-
(2004)
FEMS Microbiol Ecol
, vol.48
, pp. 437-446
-
-
Vanhoutte, T.1
Huys, G.2
De Brandt, E.3
Swings, J.4
|