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Volumn , Issue , 2011, Pages 196-200

PARSES: A pipeline for analysis of RNA-seq exogenous sequences

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL CONTAMINATION; CONTRIBUTING FACTOR; HOST ORGANISM; NEXT-GENERATION SEQUENCING; SEQUENCE ANALYSIS; TRANSCRIPTOME DATUM; TRANSCRIPTOMES;

EID: 84878502123     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (11)
  • 4
    • 84883588176 scopus 로고    scopus 로고
    • Website
    • Nik Adlin Fariz. Novoalign. Website, 2010. http://www.novocraft.com/main/ page.php?s=novoalign.
    • (2010) Nik Adlin Fariz
  • 6
    • 84883563052 scopus 로고    scopus 로고
    • Website, May
    • Adam Kraut. A pipeline is a rakefile. Website, May 2008. http://www.bleedingedgebiotech.com/blog/ruby/a-pipeline-is-a-rakefile/.
    • (2008) A Pipeline Is a Rakefile
    • Kraut, A.1
  • 7
    • 78649427725 scopus 로고    scopus 로고
    • Quantitative and qualitative RNA-seq based evaluation of epstein-barr virus transcription in type I latency burkitt's lymphoma cells
    • Zhen Lin, Guorong Xu, Nan Deng, Christopher Taylor, Dongxiao Zhu, and Erik K Flemington. Quantitative and qualitative RNA-seq based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells. J. Virol., pages JVI.01521-10, 2010.
    • (2010) J. Virol.
    • Lin, Z.1    Xu, G.2    Deng, N.3    Taylor, C.4    Zhu, D.5    Flemington, E.K.6
  • 9
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-seq
    • (Oxford, England) May
    • Cole Trapnell, Lior Pachter, and Steven L Salzberg. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics (Oxford, England), 25(9):1105-11, May 2009.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 10
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation
    • May
    • Cole Trapnell, Brian A. Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J. van Baren, Steven L. Salzberg, Barbara J. Wold, and Lior Pachter. Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotech, 28(5):511-515, May 2010.
    • (2010) Nat Biotech , vol.28 , Issue.5 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    Van Baren, M.J.6    Salzberg, S.L.7    Wold, B.J.8    Pachter, L.9
  • 11
    • 57749195712 scopus 로고    scopus 로고
    • RNA-seq: A revolutionary tool for transcrip-tomics
    • January
    • Zhong Wang, Mark Gerstein, and Michael Sny-der. RNA-Seq: a revolutionary tool for transcrip-tomics. Nature reviews. Genetics, 10(1):57-63, January 2009.
    • (2009) Nature Reviews. Genetics , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.