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Volumn 7, Issue 5, 2013, Pages

Evolutionary Dynamics of West Nile Virus in the United States, 1999-2011: Phylogeny, Selection Pressure and Evolutionary Time-Scale Analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLADISTICS; DISEASE SURVEILLANCE; EVOLUTION; GENE SEQUENCE; GENETIC STABILITY; GENETIC VARIABILITY; GENOTYPE; HUMAN; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS PATHOGENESIS; WEST NILE FLAVIVIRUS;

EID: 84878488071     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002245     Document Type: Article
Times cited : (61)

References (54)
  • 1
    • 84878491021 scopus 로고    scopus 로고
    • Dengue virus and other arboviruses: a global view of risks
    • Añez G, Chancey C, Grinev A, Rios M, (2012) Dengue virus and other arboviruses: a global view of risks. ISBT Science Series 7: 274-282.
    • (2012) ISBT Science Series , vol.7 , pp. 274-282
    • Añez, G.1    Chancey, C.2    Grinev, A.3    Rios, M.4
  • 3
    • 77955980756 scopus 로고    scopus 로고
    • West Nile virus and its emergence in the United States of America
    • Murray KO, Mertens E, Despres P, (2010) West Nile virus and its emergence in the United States of America. Vet Res 41: 67-81.
    • (2010) Vet Res , vol.41 , pp. 67-81
    • Murray, K.O.1    Mertens, E.2    Despres, P.3
  • 4
    • 32944469306 scopus 로고    scopus 로고
    • West Nile virus: epidemiology and clinical features of an emerging epidemic in the United States
    • Hayes EB, Gubler DJ, (2006) West Nile virus: epidemiology and clinical features of an emerging epidemic in the United States. Annu Rev Med 57: 181-194.
    • (2006) Annu Rev Med , vol.57 , pp. 181-194
    • Hayes, E.B.1    Gubler, D.J.2
  • 5
    • 0030886380 scopus 로고    scopus 로고
    • Extensive nucleotide changes and deletions within the envelope glycoprotein gene of Euro-African West Nile viruses
    • Berthet FX, Zeller HG, Drouet MT, Rauzier J, Digoutte JP, et al. (1997) Extensive nucleotide changes and deletions within the envelope glycoprotein gene of Euro-African West Nile viruses. J Gen Virol 78: 2293-2297.
    • (1997) J Gen Virol , vol.78 , pp. 2293-2297
    • Berthet, F.X.1    Zeller, H.G.2    Drouet, M.T.3    Rauzier, J.4    Digoutte, J.P.5
  • 6
    • 0036308940 scopus 로고    scopus 로고
    • Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East
    • Lanciotti RS, Ebel GD, Deubel V, Kerst AJ, Murri S, et al. (2002) Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East. Virology 298: 96-105.
    • (2002) Virology , vol.298 , pp. 96-105
    • Lanciotti, R.S.1    Ebel, G.D.2    Deubel, V.3    Kerst, A.J.4    Murri, S.5
  • 7
    • 13744263729 scopus 로고    scopus 로고
    • Novel flavivirus or new lineage of West Nile virus, Central Europe
    • Bakonyi T, Hubálek Z, Rudolf I, Nowotny N, (2005) Novel flavivirus or new lineage of West Nile virus, Central Europe. Emerg Infect Dis 11: 225-231.
    • (2005) Emerg Infect Dis , vol.11 , pp. 225-231
    • Bakonyi, T.1    Hubálek, Z.2    Rudolf, I.3    Nowotny, N.4
  • 9
  • 10
    • 79951804708 scopus 로고    scopus 로고
    • Phylogeography of West Nile virus: from the cradle of evolution in Africa to Eurasia, Australia, and the Americas
    • May FJ, Davis CT, Tesh RB, Barrett AD, (2011) Phylogeography of West Nile virus: from the cradle of evolution in Africa to Eurasia, Australia, and the Americas. J Virol 85: 2964-2974.
    • (2011) J Virol , vol.85 , pp. 2964-2974
    • May, F.J.1    Davis, C.T.2    Tesh, R.B.3    Barrett, A.D.4
  • 11
    • 80455134792 scopus 로고    scopus 로고
    • Human case of autochthonous West Nile virus lineage 2 infection in Italy, September 2011
    • pii
    • Bagnarelli P, Marinelli K, Trotta D, Monachetti A, Tavio M, et al. (2011) Human case of autochthonous West Nile virus lineage 2 infection in Italy, September 2011. Euro Surveill 16, pii: 20002.
    • (2011) Euro Surveill , vol.16 , pp. 20002
    • Bagnarelli, P.1    Marinelli, K.2    Trotta, D.3    Monachetti, A.4    Tavio, M.5
  • 14
    • 79955768396 scopus 로고    scopus 로고
    • Phylogenetic analysis of West Nile virus isolates, Italy, 2008-2009
    • Rossini G, Carletti F, Bordi L, Cavrini F, Gaibani P, et al. (2011) Phylogenetic analysis of West Nile virus isolates, Italy, 2008-2009. Emerg Infect Dis 17: 903-906.
    • (2011) Emerg Infect Dis , vol.17 , pp. 903-906
    • Rossini, G.1    Carletti, F.2    Bordi, L.3    Cavrini, F.4    Gaibani, P.5
  • 15
    • 0033579282 scopus 로고    scopus 로고
    • Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States
    • Lanciotti RS, Roehrig JT, Deubel V, Smith J, Parker M, et al. (1999) Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286: 2333-2337.
    • (1999) Science , vol.286 , pp. 2333-2337
    • Lanciotti, R.S.1    Roehrig, J.T.2    Deubel, V.3    Smith, J.4    Parker, M.5
  • 16
    • 27644589301 scopus 로고    scopus 로고
    • Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype
    • Davis CT, Ebel GD, Lanciotti RS, Brault AC, Guzman H, et al. (2005) Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype. Virology 342: 252-265.
    • (2005) Virology , vol.342 , pp. 252-265
    • Davis, C.T.1    Ebel, G.D.2    Lanciotti, R.S.3    Brault, A.C.4    Guzman, H.5
  • 19
    • 34848900458 scopus 로고    scopus 로고
    • A newly emergent genotype of West Nile virus is transmitted earlier and more efficiently by Culex mosquitoes
    • Moudy RM, Meola MA, Morin LL, Ebel GD, Kramer LD, (2007) A newly emergent genotype of West Nile virus is transmitted earlier and more efficiently by Culex mosquitoes. Am J Trop Med Hyg 77: 365-370.
    • (2007) Am J Trop Med Hyg , vol.77 , pp. 365-370
    • Moudy, R.M.1    Meola, M.A.2    Morin, L.L.3    Ebel, G.D.4    Kramer, L.D.5
  • 20
    • 0038579603 scopus 로고    scopus 로고
    • Limited evolution of West Nile virus has occurred during its southwesterly spread in the United States
    • Beasley DW, Davis CT, Guzman H, Vanlandingham DL, Travassos da Rosa AP, et al. (2003) Limited evolution of West Nile virus has occurred during its southwesterly spread in the United States. Virology 309: 190-195.
    • (2003) Virology , vol.309 , pp. 190-195
    • Beasley, D.W.1    Davis, C.T.2    Guzman, H.3    Vanlandingham, D.L.4    Travassos da Rosa, A.P.5
  • 21
    • 36749028160 scopus 로고    scopus 로고
    • Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient
    • Aaskov J, Buzacott K, Field E, Lowry K, Berlioz-Arthaud A, et al. (2007) Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient. J Gen Virol 88: 3334-3340.
    • (2007) J Gen Virol , vol.88 , pp. 3334-3340
    • Aaskov, J.1    Buzacott, K.2    Field, E.3    Lowry, K.4    Berlioz-Arthaud, A.5
  • 22
  • 23
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 24
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 25
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
    • Anisimova M, Gascuel O, (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 26
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 27
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • Posada D, (2008) jModelTest: Phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 28
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5
  • 29
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL, (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 30
    • 17744396121 scopus 로고    scopus 로고
    • Not So Different After All: A comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond SL, Frost SDW, (2005) Not So Different After All: A comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222.
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 32
    • 80155187383 scopus 로고    scopus 로고
    • A random effects branch-site model for detecting episodic diversifying selection
    • Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, et al. (2011) A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol 28: 3033-3043.
    • (2011) Mol Biol Evol , vol.28 , pp. 3033-3043
    • Kosakovsky Pond, S.L.1    Murrell, B.2    Fourment, M.3    Frost, S.D.4    Delport, W.5
  • 34
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 35
    • 0003078723 scopus 로고
    • Approximate Bayesian inference with the weighted likelihood bootstrap
    • Newton MA, Raftery AE, (1994) Approximate Bayesian inference with the weighted likelihood bootstrap. J R Statist Soc B 56: 3-48.
    • (1994) J R Statist Soc B , vol.56 , pp. 3-48
    • Newton, M.A.1    Raftery, A.E.2
  • 36
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous-time Markov chain evolutionary models
    • Suchard MA, Weiss RE, Sinsheimer JS, (2001) Bayesian selection of continuous-time Markov chain evolutionary models. Mol Biol Evol 18: 1001-1013.
    • (2001) Mol Biol Evol , vol.18 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 38
    • 33847283608 scopus 로고    scopus 로고
    • Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005
    • Bertolotti L, Kitron U, Goldberg TL, (2007) Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005. Virology 360: 143-149.
    • (2007) Virology , vol.360 , pp. 143-149
    • Bertolotti, L.1    Kitron, U.2    Goldberg, T.L.3
  • 39
    • 43049117198 scopus 로고    scopus 로고
    • Fine-scale genetic variation and evolution of West Nile Virus in a transmission "hot spot" in suburban Chicago, USA
    • Bertolotti L, Kitron UD, Walker ED, Ruiz MO, Brawn JD, et al. (2008) Fine-scale genetic variation and evolution of West Nile Virus in a transmission "hot spot" in suburban Chicago, USA. Virology 374: 381-389.
    • (2008) Virology , vol.374 , pp. 381-389
    • Bertolotti, L.1    Kitron, U.D.2    Walker, E.D.3    Ruiz, M.O.4    Brawn, J.D.5
  • 40
    • 0242386557 scopus 로고    scopus 로고
    • Genetic variation among temporally and geographically distinct West Nile virus isolates, United States, 2001, 2002
    • Davis CT, Beasley DW, Guzman H, Raj R, D'Anton M, et al. (2003) Genetic variation among temporally and geographically distinct West Nile virus isolates, United States, 2001, 2002. Emerg Infect Dis 9: 1423-1429.
    • (2003) Emerg Infect Dis , vol.9 , pp. 1423-1429
    • Davis, C.T.1    Beasley, D.W.2    Guzman, H.3    Raj, R.4    D'Anton, M.5
  • 41
    • 77953136732 scopus 로고    scopus 로고
    • Evolutionary characterization of the West Nile Virus complete genome
    • Gray RR, Veras NM, Santos LA, Salemi M, (2010) Evolutionary characterization of the West Nile Virus complete genome. Mol Phylogenet Evol 56: 195-200.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 195-200
    • Gray, R.R.1    Veras, N.M.2    Santos, L.A.3    Salemi, M.4
  • 42
    • 34247609219 scopus 로고    scopus 로고
    • Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons
    • Herring BL, Bernardin F, Caglioti S, Stramer S, Tobler L, et al. (2007) Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons. Virology 363: 220-228.
    • (2007) Virology , vol.363 , pp. 220-228
    • Herring, B.L.1    Bernardin, F.2    Caglioti, S.3    Stramer, S.4    Tobler, L.5
  • 44
    • 79960938517 scopus 로고    scopus 로고
    • Molecular evolution of West Nile virus in a northern temperate region: Connecticut, USA 1999-2008
    • Armstrong PM, Vossbrinck CR, Andreadis TG, Anderson JF, Pesko KN, et al. (2011) Molecular evolution of West Nile virus in a northern temperate region: Connecticut, USA 1999-2008. Virology 417: 203-210.
    • (2011) Virology , vol.417 , pp. 203-210
    • Armstrong, P.M.1    Vossbrinck, C.R.2    Andreadis, T.G.3    Anderson, J.F.4    Pesko, K.N.5
  • 45
    • 84858233861 scopus 로고    scopus 로고
    • Circulation of different lineages of dengue virus type 2 in Central America, their evolutionary time-scale and selection pressure analysis
    • Añez G, Morales-Betoulle ME, Rios M, (2011) Circulation of different lineages of dengue virus type 2 in Central America, their evolutionary time-scale and selection pressure analysis. PLoS One 6: e27459.
    • (2011) PLoS One , vol.6
    • Añez, G.1    Morales-Betoulle, M.E.2    Rios, M.3
  • 46
    • 0141565071 scopus 로고    scopus 로고
    • Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus
    • Holmes EC, (2003) Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus. J Virol 77: 11296-11298.
    • (2003) J Virol , vol.77 , pp. 11296-11298
    • Holmes, E.C.1
  • 47
    • 34547567977 scopus 로고    scopus 로고
    • Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach
    • Web Server issue
    • Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, et al. (2007) Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach. Nucleic Acids Res 35 (Web Server issue):: W506-11.
    • (2007) Nucleic Acids Res , vol.35
    • Stern, A.1    Doron-Faigenboim, A.2    Erez, E.3    Martz, E.4    Bacharach, E.5
  • 48
    • 53749100397 scopus 로고    scopus 로고
    • Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005
    • Tang Y, Liu B, Hapip CA, Xu D, Fang CT, (2008) Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005. J Clin Virol 43: 292-297.
    • (2008) J Clin Virol , vol.43 , pp. 292-297
    • Tang, Y.1    Liu, B.2    Hapip, C.A.3    Xu, D.4    Fang, C.T.5
  • 49
    • 84857653507 scopus 로고    scopus 로고
    • West Nile virus population genetics and evolution
    • Pesko KN, Ebel GD, (2012) West Nile virus population genetics and evolution. Infect Genet Evol 12: 181-190.
    • (2012) Infect Genet Evol , vol.12 , pp. 181-190
    • Pesko, K.N.1    Ebel, G.D.2
  • 50
    • 84866280221 scopus 로고    scopus 로고
    • Unifying the spatial epidemiology and molecular evolution of emerging epidemics
    • Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, et al. (2012) Unifying the spatial epidemiology and molecular evolution of emerging epidemics. PNAS 109: 15066-15071.
    • (2012) PNAS , vol.109 , pp. 15066-15071
    • Pybus, O.G.1    Suchard, M.A.2    Lemey, P.3    Bernardin, F.J.4    Rambaut, A.5
  • 51
    • 7444225788 scopus 로고    scopus 로고
    • Emergence of attenuated West Nile virus variants in Texas, 2003
    • Davis CT, Beasley DW, Guzman H, Siirin M, Parsons RE, et al. (2004) Emergence of attenuated West Nile virus variants in Texas, 2003. Virology 330: 342-50.
    • (2004) Virology , vol.330 , pp. 342-350
    • Davis, C.T.1    Beasley, D.W.2    Guzman, H.3    Siirin, M.4    Parsons, R.E.5
  • 52
    • 78049400282 scopus 로고    scopus 로고
    • West Nile virus: molecular epidemiology and diversity
    • In: Diamond MS, editor, New York: Spinger
    • Ebel GD, Kramer LD (2009). West Nile virus: molecular epidemiology and diversity. In: Diamond MS, editor. West Nile Encephalitis Virus Infection. New York: Spinger, pp. 25-43.
    • (2009) West Nile Encephalitis Virus Infection , pp. 25-43
    • Ebel, G.D.1    Kramer, L.D.2
  • 54
    • 84858075397 scopus 로고    scopus 로고
    • Point mutations in the West Nile virus (Flaviviridae; Flavivirus) RNA-dependent RNA polymerase alter viral fitness in a host-dependent manner in vitro and in vivo
    • Van Slyke GA, Ciota AT, Wilsey GG, Jaeger J, Shi P-Y, et al. (2012) Point mutations in the West Nile virus (Flaviviridae; Flavivirus) RNA-dependent RNA polymerase alter viral fitness in a host-dependent manner in vitro and in vivo. Virology 427: 18-24.
    • (2012) Virology , vol.427 , pp. 18-24
    • Van Slyke, G.A.1    Ciota, A.T.2    Wilsey, G.G.3    Jaeger, J.4    Shi, P.-Y.5


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