-
1
-
-
32944469306
-
West Nile virus: Epidemiology and clinical features of an emerging epidemic in the United States
-
doi:10.1146/annurev.med.57.121304.131418
-
Hayes EB, Gubler DJ. West Nile virus: epidemiology and clinical features of an emerging epidemic in the United States. Annu Rev Med. 2006;57:181-94. doi:10.1146/annurev.med.57.121304.131418
-
(2006)
Annu Rev Med
, vol.57
, pp. 181-194
-
-
Hayes, E.B.1
Gubler, D.J.2
-
2
-
-
0029912819
-
West Nile: A deadly virus?
-
doi:10.1016/S0140-6736(05)65799-6
-
Le G.B, Bougermouh A, Azzam T, Bouakaz R. West Nile: a deadly virus? Lancet. 1996;348:1315. doi:10.1016/S0140-6736(05)65799-6
-
(1996)
Lancet
, vol.348
, pp. 1315
-
-
Le, G.B.1
Bougermouh, A.2
Azzam, T.3
Bouakaz, R.4
-
3
-
-
0033902653
-
Isolation of two strains of West Nile virus during an outbreak in southern Russia, 1999
-
doi:10.3201/eid0604.000408
-
Lvov DK, Butenko AM, Gromashevsky VL, Larichev VP, Gaidamovich SY, Vyshemirsky OI, et al. Isolation of two strains of West Nile virus during an outbreak in southern Russia, 1999. Emerg Infect Dis. 2000;6:373-6. doi:10.3201/eid0604.000408
-
(2000)
Emerg Infect Dis
, vol.6
, pp. 373-376
-
-
Lvov, D.K.1
Butenko, A.M.2
Gromashevsky, V.L.3
Larichev, V.P.4
Gaidamovich, S.Y.5
Vyshemirsky, O.I.6
-
4
-
-
0032487085
-
West Nile encephalitis epidemic in southeastern Romania
-
doi:10.1016/S0140-6736(98)03538-7
-
Tsai TF, Popovici F, Cernescu C, Campbell GL, Nedelcu NI. West Nile encephalitis epidemic in southeastern Romania. Lancet. 1998;352:767-71. doi:10.1016/S0140-6736(98)03538-7
-
(1998)
Lancet
, vol.352
, pp. 767-771
-
-
Tsai, T.F.1
Popovici, F.2
Cernescu, C.3
Campbell, G.L.4
Nedelcu, N.I.5
-
5
-
-
27644589301
-
Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: Evidence for the emergence of a dominant genotype
-
doi:10.1016/j.virol.2005.07.022
-
Davis CT, Ebel GD, Lanciotti RS, Brault AC, Guzman H, Siirin M, et al. Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype. Virology. 2005;342:252-65. doi:10.1016/j.virol.2005.07.022
-
(2005)
Virology
, vol.342
, pp. 252-265
-
-
Davis, C.T.1
Ebel, G.D.2
Lanciotti, R.S.3
Brault, A.C.4
Guzman, H.5
Siirin, M.6
-
6
-
-
7644225028
-
Genetic and phenotypic variation of West Nile virus in New York, 2000-2003
-
Ebel GD, Carricaburu J, Young D, Bernard KA, Kramer LD. Genetic and phenotypic variation of West Nile virus in New York, 2000-2003. Am J Trop Med Hyg. 2004;71:493-500.
-
(2004)
Am J Trop Med Hyg
, vol.71
, pp. 493-500
-
-
Ebel, G.D.1
Carricaburu, J.2
Young, D.3
Bernard, K.A.4
Kramer, L.D.5
-
7
-
-
34848900458
-
A newly emergent genotype of West Nile virus is transmitted earlier and more effi ciently by Culex mosquitoes
-
Moudy RM, Meola MA, Morin LL, Ebel GD, Kramer LD. A newly emergent genotype of West Nile virus is transmitted earlier and more effi ciently by Culex mosquitoes. Am J Trop Med Hyg. 2007;77: 365-70.
-
(2007)
Am J Trop Med Hyg
, vol.77
, pp. 365-370
-
-
Moudy, R.M.1
Meola, M.A.2
Morin, L.L.3
Ebel, G.D.4
Kramer, L.D.5
-
8
-
-
57649180803
-
Comparison of oral infectious dose of West Nile virus isolates representing three distinct genotypes in Culex quinquefasciatus
-
Vanlandingham DL, McGee CE, Klingler KA, Galbraith SE, Barrett ADT, Higgs S. Comparison of oral infectious dose of West Nile virus isolates representing three distinct genotypes in Culex quinquefasciatus. Am J Trop Med Hyg. 2008;79:951-4.
-
(2008)
Am J Trop Med Hyg
, vol.79
, pp. 951-954
-
-
Vanlandingham, D.L.1
McGee, C.E.2
Klingler, K.A.3
Galbraith, S.E.4
Barrett, A.D.T.5
Higgs, S.6
-
9
-
-
0038579603
-
Limited evolution of West Nile virus has occurred during its southwesterly spread in the United States
-
doi:10.1016/S0042-6822(03)00150-8
-
Beasley DW, Davis CT, Guzman H, Vanlandingham DL, Travassos da Rosa AP, Parsons RE, et al. Limited evolution of West Nile virus has occurred during its southwesterly spread in the United States. Virology. 2003;309:190-5. doi:10.1016/S0042-6822(03)00150-8
-
(2003)
Virology
, vol.309
, pp. 190-195
-
-
Beasley, D.W.1
Davis, C.T.2
Guzman, H.3
Vanlandingham, D.L.4
da Rosa, T.A.P.5
Parsons, R.E.6
-
10
-
-
7444225788
-
Emergence of attenuated West Nile virus variants in Texas, 2003
-
doi:10.1016/j.virol.2004.09.016
-
Davis CT, Beasley DW, Guzman H, Siirin M, Parsons RE, Tesh RB, et al. Emergence of attenuated West Nile virus variants in Texas, 2003. Virology. 2004;330:342-50. doi:10.1016/j.virol.2004.09.016
-
(2004)
Virology
, vol.330
, pp. 342-350
-
-
Davis, C.T.1
Beasley, D.W.2
Guzman, H.3
Siirin, M.4
Parsons, R.E.5
Tesh, R.B.6
-
11
-
-
34249814039
-
A combination of naturally occurring mutations in North American West Nile virus nonstructural protein genes and in the 3′ untranslated region alters virus phenotype
-
doi:10.1128/JVI.02387-06
-
Davis CT, Galbraith SE, Zhang S, Whiteman MC, Li L, Kinney RM, et al. A combination of naturally occurring mutations in North American West Nile virus nonstructural protein genes and in the 3′ untranslated region alters virus phenotype. J Virol. 2007;81:6111-6. doi:10.1128/JVI.02387-06
-
(2007)
J Virol
, vol.81
, pp. 6111-6116
-
-
Davis, C.T.1
Galbraith, S.E.2
Zhang, S.3
Whiteman, M.C.4
Li, L.5
Kinney, R.M.6
-
12
-
-
77955518877
-
Multiple pathways to the attenuation of West Nile virus in south-east Texas in 2003
-
doi:10.1016/j.virol.2010.04.022
-
May FJ, Li L, Davis CT, Galbraith SE, Barrett ADT. Multiple pathways to the attenuation of West Nile virus in south-east Texas in 2003. Virology. 2010;405:8-14. doi:10.1016/j.virol.2010.04.022
-
(2010)
Virology
, vol.405
, pp. 8-14
-
-
May, F.J.1
Li, L.2
Davis, C.T.3
Galbraith, S.E.4
Barrett, A.D.T.5
-
13
-
-
34047181032
-
Genetic stasis of dominant West Nile virus genotype, Houston, Texas
-
doi:10.3201/eid1304.061473
-
Davis CT, Li L, May FJ, Bueno R Jr, Dennett JA, Bala AA, et al. Genetic stasis of dominant West Nile virus genotype, Houston, Texas. Emerg Infect Dis. 2007;13:601-4. doi:10.3201/eid1304.061473
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 601-604
-
-
Davis, C.T.1
Li, L.2
May, F.J.3
Bueno Jr., R.4
Dennett, J.A.5
Bala, A.A.6
-
14
-
-
33847203633
-
Declining growth rate of West Nile virus in North America
-
doi:10.1128/JVI.02169-06
-
Snapinn KW, Holmes EC, Young DS, Bernard KA, Kramer LD, Ebel GD. Declining growth rate of West Nile virus in North America. J Virol. 2007;81:2531-4. doi:10.1128/JVI.02169-06
-
(2007)
J Virol
, vol.81
, pp. 2531-2534
-
-
Snapinn, K.W.1
Holmes, E.C.2
Young, D.S.3
Bernard, K.A.4
Kramer, L.D.5
Ebel, G.D.6
-
15
-
-
74549125386
-
SeaView Version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
doi:10.1093/molbev/msp259
-
Gouy M, Guindon S, Gascuel O. SeaView Version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 2010;27:221-4. doi:10.1093/molbev/msp259
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
16
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics. 1989;5:164-6.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
17
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
doi:10.1080/10635150390235520
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003;52:696-704. doi:10.1080/10635150390235520
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
18
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
doi:10.1093/bioinformatics/14.9.817
-
Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998;14:817-8. doi:10.1093/bioinformatics/14.9.817
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
19
-
-
84954369760
-
PAUP: Phylogenetic analysis using parsimony (and other methods)
-
Swofford DL. PAUP: phylogenetic analysis using parsimony (and other methods). Sunderland (MA): Sinauer Associates; 1998.
-
(1998)
Sunderland (MA): Sinauer Associates
-
-
Swofford, D.L.1
-
20
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
doi:10.1093/molbev/msl051
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD. Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol. 2006;23:1891-901. doi:10.1093/molbev/msl051
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1891-1901
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.5
-
21
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
doi:10.1093/bioinformatics/btq429
-
Delport W, Poon AFY, Frost SD, Kosakovsky Pond SL. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics. 2010;26:2455-7. doi:10.1093/bioinformatics/btq429
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.3
Kosakovsky Pond, S.L.4
-
22
-
-
17744395033
-
Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
-
doi:10.1093/bioinformatics/bti320
-
Pond SLK, Frost SDW. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics. 2005;21:2531-3. doi:10.1093/bioinformatics/bti320
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.L.K.1
Frost, S.D.W.2
-
23
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
doi:10.1093/molbev/msi105
-
Kosakovsky Pond SL, Frost SD. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol. 2005;22:1208-22. doi:10.1093/molbev/msi105
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.2
-
24
-
-
34047219156
-
Adaptation to human populations is revealed by within-host polymorphisms in HIV-1 and hepatitis C virus
-
doi:10.1371/journal.ppat.0030045
-
Poon AF, Kosakovsky Pond SL, Bennett P, Richman DD, Leigh Brown AJ, Frost SDW. Adaptation to human populations is revealed by within-host polymorphisms in HIV-1 and hepatitis C virus. PLoS Pathog. 2007;3:e45. doi:10.1371/journal.ppat.0030045
-
(2007)
PLoS Pathog
, vol.e45
, pp. 3
-
-
Poon, A.F.1
Kosakovsky Pond, S.L.2
Bennett, P.3
Richman, D.D.4
Leigh, B.A.J.5
Frost, S.D.W.6
-
25
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 1999;41:95-8.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
26
-
-
41349108712
-
Genetic variability of West Nile virus in US blood donors, 2002-2005
-
doi:10.3201/eid1403.070463
-
Grinev A, Daniel S, Stramer S, Rossmann S, Caglioti S, Rios M. Genetic variability of West Nile virus in US blood donors, 2002-2005. Emerg Infect Dis. 2008;14:436-44. doi:10.3201/eid1403.070463
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 436-444
-
-
Grinev, A.1
Daniel, S.2
Stramer, S.3
Rossmann, S.4
Caglioti, S.5
Rios, M.6
-
27
-
-
34247609219
-
Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons
-
doi:10.1016/j.virol.2007.01.019
-
Herring BL, Bernardin F, Caglioti S, Stramer S, Tobler L, Andrews W, et al. Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons. Virology. 2007;363:220-8. doi:10.1016/j.virol.2007.01.019
-
(2007)
Virology
, vol.363
, pp. 220-228
-
-
Herring, B.L.1
Bernardin, F.2
Caglioti, S.3
Stramer, S.4
Tobler, L.5
Andrews, W.6
-
28
-
-
33644508036
-
Introductions of West Nile virus strains to Mexico
-
Deardorff E, Estrada-Franco J, Brault AC, Navarro-Lopez R, Campomanes- Cortes A, Paz-Ramirez P, et al. Introductions of West Nile virus strains to Mexico. Emerg Infect Dis. 2006;12:314-8.
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 314-318
-
-
Deardorff, E.1
Estrada-Franco, J.2
Brault, A.C.3
Navarro-Lopez, R.4
Campomanes-Cortes, A.5
Paz-Ramirez, P.6
-
29
-
-
53749100397
-
Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005
-
doi:10.1016/j.jcv.2008.08.004
-
Tang Y, Liu B, Hapip CA, Xu D, Fang CT. Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005. J Clin Virol. 2008;43:292-7. doi:10.1016/j.jcv.2008.08.004
-
(2008)
J Clin Virol
, vol.43
, pp. 292-297
-
-
Tang, Y.1
Liu, B.2
Hapip, C.A.3
Xu, D.4
Fang, C.T.5
-
30
-
-
0036308940
-
Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East
-
doi:10.1006/viro.2002.1449
-
Lanciotti RS, Ebel GD, Deubel V, Kerst AJ, Murri S, Meyer R, et al. Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East. Virology. 2002;298:96-105. doi:10.1006/viro.2002.1449
-
(2002)
Virology
, vol.298
, pp. 96-105
-
-
Lanciotti, R.S.1
Ebel, G.D.2
Deubel, V.3
Kerst, A.J.4
Murri, S.5
Meyer, R.6
-
31
-
-
33847283608
-
Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005
-
doi:10.1016/j.virol.2006.10.030
-
Bertolotti L, Kitron U, Goldberg TL. Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005. Virology. 2007;360:143-9. doi:10.1016/j.virol.2006.10.030
-
(2007)
Virology
, vol.360
, pp. 143-149
-
-
Bertolotti, L.1
Kitron, U.2
Goldberg, T.L.3
-
32
-
-
43049117198
-
Fine-scale genetic variation and evolution of West Nile virus in a transmission ''hot spot'' in suburban Chicago, USA
-
doi:10.1016/j.virol.2007.12.040
-
Bertolotti L, Kitron UD, Walker ED, Ruiz MO, Brawn JD, Loss SR, et al. Fine-scale genetic variation and evolution of West Nile virus in a transmission ''hot spot'' in suburban Chicago, USA. Virology. 2008;374:381-9. doi:10.1016/j.virol.2007.12.040
-
(2008)
Virology
, vol.374
, pp. 381-389
-
-
Bertolotti, L.1
Kitron, U.D.2
Walker, E.D.3
Ruiz, M.O.4
Brawn, J.D.5
Loss, S.R.6
-
33
-
-
77954327100
-
Multi-year evolutionary dynamics of West Nile virus in suburban Chicago, USA, 2005-2007
-
doi:10.1098/rstb.2010.0054
-
Amore G, Bertolotti L, Hamer GL, Kitron UD, Walker ED, Ruiz MO, et al. Multi-year evolutionary dynamics of West Nile virus in suburban Chicago, USA, 2005-2007. Philos Trans R Soc Lond B Biol Sci. 2010;365:1871-8. doi:10.1098/rstb.2010.0054
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 1871-1878
-
-
Amore, G.1
Bertolotti, L.2
Hamer, G.L.3
Kitron, U.D.4
Walker, E.D.5
Ruiz, M.O.6
-
34
-
-
34548333546
-
A single positively selected West Nile viral mutation confers increased virogenesis in American crows
-
doi:10.1038/ng2097
-
Brault AC, Huang CY, Langevin SA, Kinney RM, Bowen RA, Ramey WN, et al. A single positively selected West Nile viral mutation confers increased virogenesis in American crows. Nat Genet. 2007;39:1162-6. doi:10.1038/ng2097
-
(2007)
Nat Genet
, vol.39
, pp. 1162-1166
-
-
Brault, A.C.1
Huang, C.Y.2
Langevin, S.A.3
Kinney, R.M.4
Bowen, R.A.5
Ramey, W.N.6
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