-
1
-
-
0035818547
-
A phylogenetic approach to following West Nile virus in Connecticut
-
Anderson J., Vossbrinck C., Andreadis T., Iton A., Beckwith W.r., and Mayo D. A phylogenetic approach to following West Nile virus in Connecticut. Proc. Natl. Acad. Sci. USA 98 (2001) 12885-12889
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 12885-12889
-
-
Anderson, J.1
Vossbrinck, C.2
Andreadis, T.3
Iton, A.4
Beckwith, W.r.5
Mayo, D.6
-
2
-
-
0038356651
-
Phylogenetic relationships of West Nile viruses isolated from birds and horses in Israel from 1997 to 2001
-
Banet-Noach C., Malkinson M., Brill A., Samina I., Yadin H., Weisman Y., Pokamunski S., King R., Deubel V., and Stram Y. Phylogenetic relationships of West Nile viruses isolated from birds and horses in Israel from 1997 to 2001. Virus Genes 26 (2003) 135-141
-
(2003)
Virus Genes
, vol.26
, pp. 135-141
-
-
Banet-Noach, C.1
Malkinson, M.2
Brill, A.3
Samina, I.4
Yadin, H.5
Weisman, Y.6
Pokamunski, S.7
King, R.8
Deubel, V.9
Stram, Y.10
-
3
-
-
0030886380
-
Extensive nucleotide changes and deletions within the envelope glycoprotein gene of Euro-African West Nile viruses
-
Berthet F.X., Zeller H.G., Drouet M.T., Rauzier J., Digoutte J.P., and Deubel V. Extensive nucleotide changes and deletions within the envelope glycoprotein gene of Euro-African West Nile viruses. J. Gen. Virol. 78 Pt 9 (1997) 2293-2297
-
(1997)
J. Gen. Virol.
, vol.78
, Issue.PART 9
, pp. 2293-2297
-
-
Berthet, F.X.1
Zeller, H.G.2
Drouet, M.T.3
Rauzier, J.4
Digoutte, J.P.5
Deubel, V.6
-
4
-
-
33847283608
-
Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005
-
Bertolotti L., Kitron U., and Goldberg T.L. Diversity and evolution of West Nile virus in Illinois and the United States, 2002-2005. Virology 360 (2007) 143-149
-
(2007)
Virology
, vol.360
, pp. 143-149
-
-
Bertolotti, L.1
Kitron, U.2
Goldberg, T.L.3
-
5
-
-
43049117198
-
Fine-scale genetic variation and evolution of West Nile virus in a transmission "hot spot" in suburban Chicago, USA
-
Bertolotti L., Kitron U., Walker E., Ruiz M., Brawn J., Loss S., Hamer G., and Goldberg T. Fine-scale genetic variation and evolution of West Nile virus in a transmission "hot spot" in suburban Chicago, USA. Virology 374 (2008) 381-389
-
(2008)
Virology
, vol.374
, pp. 381-389
-
-
Bertolotti, L.1
Kitron, U.2
Walker, E.3
Ruiz, M.4
Brawn, J.5
Loss, S.6
Hamer, G.7
Goldberg, T.8
-
6
-
-
3042732414
-
Phylogenetic analysis of West Nile virus, Nuevo Leon State, Mexico
-
Blitvich B., Fernández-Salas I., Contreras-Cordero J., Loroño-Pino M., Marlenee N., Díaz F., González-Rojas J., Obregón-Martínez N., Chiu-García J., Black W.t., and Beaty B. Phylogenetic analysis of West Nile virus, Nuevo Leon State, Mexico. Emerg. Infect Dis. 10 (2004) 1314-1317
-
(2004)
Emerg. Infect Dis.
, vol.10
, pp. 1314-1317
-
-
Blitvich, B.1
Fernández-Salas, I.2
Contreras-Cordero, J.3
Loroño-Pino, M.4
Marlenee, N.5
Díaz, F.6
González-Rojas, J.7
Obregón-Martínez, N.8
Chiu-García, J.9
Black, W.t.10
Beaty, B.11
-
7
-
-
38949104818
-
Genetic determinants of virulence in pathogenic lineage 2 West Nile virus strains
-
Botha E., Markotter W., Wolfaardt M., Paweska J., Swanepoel R., Palacios G., Nel L., and Venter M. Genetic determinants of virulence in pathogenic lineage 2 West Nile virus strains. Emerg. Infect Dis. 14 (2008) 222-230
-
(2008)
Emerg. Infect Dis.
, vol.14
, pp. 222-230
-
-
Botha, E.1
Markotter, W.2
Wolfaardt, M.3
Paweska, J.4
Swanepoel, R.5
Palacios, G.6
Nel, L.7
Venter, M.8
-
8
-
-
0036096570
-
Phylogenetic analysis of a human isolate from the 2000 Israel West Nile virus epidemic
-
Briese T., Rambaut A., Pathmajeyan M., Bishara J., Weinberger M., Pitlik S., and Lipkin W. Phylogenetic analysis of a human isolate from the 2000 Israel West Nile virus epidemic. Emerg. Infect. Dis. 8 (2002) 528-531
-
(2002)
Emerg. Infect. Dis.
, vol.8
, pp. 528-531
-
-
Briese, T.1
Rambaut, A.2
Pathmajeyan, M.3
Bishara, J.4
Weinberger, M.5
Pitlik, S.6
Lipkin, W.7
-
9
-
-
0242386557
-
Genetic variation among temporally and geographically distinct West Nile virus isolates, United States, 2001, 2002
-
Davis C., Beasley D., Guzman H., Raj R., D'Anton M., Novak R., Unnasch T., Tesh R., and Barrett A. Genetic variation among temporally and geographically distinct West Nile virus isolates, United States, 2001, 2002. Emerg. Infect Dis. 9 (2003) 1423-1429
-
(2003)
Emerg. Infect Dis.
, vol.9
, pp. 1423-1429
-
-
Davis, C.1
Beasley, D.2
Guzman, H.3
Raj, R.4
D'Anton, M.5
Novak, R.6
Unnasch, T.7
Tesh, R.8
Barrett, A.9
-
10
-
-
34047181032
-
Genetic stasis of dominant West Nile virus genotype, Houston, Texas
-
Davis C., Li L., May F., Bueno R.J., Dennett J., Bala A., Guzman H., Quiroga-Elizondo D., Tesh R., and Barrett A. Genetic stasis of dominant West Nile virus genotype, Houston, Texas. Emerg. Infect Dis. 13 (2007) 601-604
-
(2007)
Emerg. Infect Dis.
, vol.13
, pp. 601-604
-
-
Davis, C.1
Li, L.2
May, F.3
Bueno, R.J.4
Dennett, J.5
Bala, A.6
Guzman, H.7
Quiroga-Elizondo, D.8
Tesh, R.9
Barrett, A.10
-
11
-
-
27644589301
-
Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype
-
Davis C.T., Ebel G.D., Lanciotti R.S., Brault A.C., Guzman H., Siirin M., Lambert A., Parsons R.E., Beasley D.W., Novak R.J., Elizondo-Quiroga D., Green E.N., Young D.S., Stark L.M., Drebot M.A., Artsob H., Tesh R.B., Kramer L.D., and Barrett A.D. Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype. Virology 342 (2005) 252-265
-
(2005)
Virology
, vol.342
, pp. 252-265
-
-
Davis, C.T.1
Ebel, G.D.2
Lanciotti, R.S.3
Brault, A.C.4
Guzman, H.5
Siirin, M.6
Lambert, A.7
Parsons, R.E.8
Beasley, D.W.9
Novak, R.J.10
Elizondo-Quiroga, D.11
Green, E.N.12
Young, D.S.13
Stark, L.M.14
Drebot, M.A.15
Artsob, H.16
Tesh, R.B.17
Kramer, L.D.18
Barrett, A.D.19
-
12
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond A.J., Nicholls G.K., Rodrigo A.G., and Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161 (2002) 1307-1320
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
13
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
14
-
-
7644225028
-
Genetic and phenotypic variation of West Nile virus in New York, 2000-2003
-
Ebel G., Carricaburu J., Young D., Bernard K., and Kramer L. Genetic and phenotypic variation of West Nile virus in New York, 2000-2003. Am. J. Trop. Med. Hyg. 71 (2004) 493-500
-
(2004)
Am. J. Trop. Med. Hyg.
, vol.71
, pp. 493-500
-
-
Ebel, G.1
Carricaburu, J.2
Young, D.3
Bernard, K.4
Kramer, L.5
-
15
-
-
10744227304
-
West Nile virus in Mexico: evidence of widespread circulation since July 2002
-
Estrada-Franco J., Navarro-Lopez R., Beasley D., Coffey L., Carrara A., Travassos da Rosa A., Clements T., Wang E., Ludwig G., Cortes A., Ramírez P., Tesh R., Barrett A., and Weaver S. West Nile virus in Mexico: evidence of widespread circulation since July 2002. Emerg. Infect Dis. 9 (2003) 1604-1607
-
(2003)
Emerg. Infect Dis.
, vol.9
, pp. 1604-1607
-
-
Estrada-Franco, J.1
Navarro-Lopez, R.2
Beasley, D.3
Coffey, L.4
Carrara, A.5
Travassos da Rosa, A.6
Clements, T.7
Wang, E.8
Ludwig, G.9
Cortes, A.10
Ramírez, P.11
Tesh, R.12
Barrett, A.13
Weaver, S.14
-
16
-
-
70249113753
-
Spatial phylodynamics of HIV-1 epidemic emergence in east Africa
-
Gray R., Tatem A., Lamers S., Hou W., Laeyendecker O., Serwadda D., Sewankambo N., Gray R., Wawer M., Quinn T., Goodenow M., and Salemi M. Spatial phylodynamics of HIV-1 epidemic emergence in east Africa. AIDS.23 (2009) F9-F17
-
(2009)
AIDS.23
-
-
Gray, R.1
Tatem, A.2
Lamers, S.3
Hou, W.4
Laeyendecker, O.5
Serwadda, D.6
Sewankambo, N.7
Gray, R.8
Wawer, M.9
Quinn, T.10
Goodenow, M.11
Salemi, M.12
-
17
-
-
41349108712
-
Genetic variability of West Nile virus in US blood donors, 2002-2005
-
Grinev A., Daniel S., Stramer S., Rossmann S., Caglioti S., and Rios M. Genetic variability of West Nile virus in US blood donors, 2002-2005. Emerg. Infect. Dis. 14 (2008) 436-444
-
(2008)
Emerg. Infect. Dis.
, vol.14
, pp. 436-444
-
-
Grinev, A.1
Daniel, S.2
Stramer, S.3
Rossmann, S.4
Caglioti, S.5
Rios, M.6
-
18
-
-
34247609219
-
Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons
-
Herring B., Bernardin F., Caglioti S., Stramer S., Tobler L., Andrews W., Cheng L., Rampersad S., Cameron C., Saldanha J., Busch M., and Delwart E. Phylogenetic analysis of WNV in North American blood donors during the 2003-2004 epidemic seasons. Virology 363 (2007) 220-228
-
(2007)
Virology
, vol.363
, pp. 220-228
-
-
Herring, B.1
Bernardin, F.2
Caglioti, S.3
Stramer, S.4
Tobler, L.5
Andrews, W.6
Cheng, L.7
Rampersad, S.8
Cameron, C.9
Saldanha, J.10
Busch, M.11
Delwart, E.12
-
20
-
-
0141532125
-
West Nile virus transmission in resident birds, Dominican Republic
-
Komar O., Robbins M., Klenk K., Blitvich B., Marlenee N., Burkhalter K., Gubler D., Gonzálvez G., Peña C., Peterson A., and Komar N. West Nile virus transmission in resident birds, Dominican Republic. Emerg. Infect. Dis. 9 (2003) 1299-1302
-
(2003)
Emerg. Infect. Dis.
, vol.9
, pp. 1299-1302
-
-
Komar, O.1
Robbins, M.2
Klenk, K.3
Blitvich, B.4
Marlenee, N.5
Burkhalter, K.6
Gubler, D.7
Gonzálvez, G.8
Peña, C.9
Peterson, A.10
Komar, N.11
-
21
-
-
0033579282
-
Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States
-
Lanciotti R., Roehrig J., Deubel V., Smith J., Parker M., Steele K., Crise B., Volpe K., Crabtree M., Scherret J., Hall R., MacKenzie J., Cropp C., Panigrahy B., Ostlund E., Schmitt B., Malkinson M., Banet C., Weissman J., Komar N., Savage H., Stone W., McNamara T., and Gubler D. Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286 (1999) 2333-2337
-
(1999)
Science
, vol.286
, pp. 2333-2337
-
-
Lanciotti, R.1
Roehrig, J.2
Deubel, V.3
Smith, J.4
Parker, M.5
Steele, K.6
Crise, B.7
Volpe, K.8
Crabtree, M.9
Scherret, J.10
Hall, R.11
MacKenzie, J.12
Cropp, C.13
Panigrahy, B.14
Ostlund, E.15
Schmitt, B.16
Malkinson, M.17
Banet, C.18
Weissman, J.19
Komar, N.20
Savage, H.21
Stone, W.22
McNamara, T.23
Gubler, D.24
more..
-
22
-
-
0036308940
-
Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East
-
Lanciotti R.S., Ebel G.D., Deubel V., Kerst A.J., Murri S., Meyer R., Bowen M., McKinney N., Morrill W.E., Crabtree M.B., Kramer L.D., and Roehrig J.T. Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East. Virology 298 (2002) 96-105
-
(2002)
Virology
, vol.298
, pp. 96-105
-
-
Lanciotti, R.S.1
Ebel, G.D.2
Deubel, V.3
Kerst, A.J.4
Murri, S.5
Meyer, R.6
Bowen, M.7
McKinney, N.8
Morrill, W.E.9
Crabtree, M.B.10
Kramer, L.D.11
Roehrig, J.T.12
-
23
-
-
0033579282
-
Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States
-
Lanciotti R.S., Roehrig J.T., Deubel V., Smith J., Parker M., Steele K., Crise B., Volpe K.E., Crabtree M.B., Scherret J.H., Hall R.A., MacKenzie J.S., Cropp C.B., Panigrahy B., Ostlund E., Schmitt B., Malkinson M., Banet C., Weissman J., Komar N., Savage H.M., Stone W., McNamara T., and Gubler D.J. Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286 (1999) 2333-2337
-
(1999)
Science
, vol.286
, pp. 2333-2337
-
-
Lanciotti, R.S.1
Roehrig, J.T.2
Deubel, V.3
Smith, J.4
Parker, M.5
Steele, K.6
Crise, B.7
Volpe, K.E.8
Crabtree, M.B.9
Scherret, J.H.10
Hall, R.A.11
MacKenzie, J.S.12
Cropp, C.B.13
Panigrahy, B.14
Ostlund, E.15
Schmitt, B.16
Malkinson, M.17
Banet, C.18
Weissman, J.19
Komar, N.20
Savage, H.M.21
Stone, W.22
McNamara, T.23
Gubler, D.J.24
more..
-
24
-
-
0036105079
-
The ecology and epidemiology of West Nile virus in Africa, Europe and Asia
-
Murgue B., Zeller H., and Deubel V. The ecology and epidemiology of West Nile virus in Africa, Europe and Asia. Curr. Top Microbiol. Immunol. 267 (2002) 195-221
-
(2002)
Curr. Top Microbiol. Immunol.
, vol.267
, pp. 195-221
-
-
Murgue, B.1
Zeller, H.2
Deubel, V.3
-
25
-
-
35148894975
-
Two distinct introductions of the West Nile virus in Portugal disclosed by phylogenetic analysis of genomic sequences
-
Parreira R., Severino P., Freitas F., Piedade J., Almeida A., and Esteves A. Two distinct introductions of the West Nile virus in Portugal disclosed by phylogenetic analysis of genomic sequences. Vector Borne Zoonotic Dis. 7 (2007) 344-352
-
(2007)
Vector Borne Zoonotic Dis.
, vol.7
, pp. 344-352
-
-
Parreira, R.1
Severino, P.2
Freitas, F.3
Piedade, J.4
Almeida, A.5
Esteves, A.6
-
26
-
-
60849131505
-
Phylogenetic analysis of West Nile virus isolated in Italy in 2008
-
Savini G., Monaco F., Calistri P., and Lelli R. Phylogenetic analysis of West Nile virus isolated in Italy in 2008. Eur. Surveill. 13 (2008)
-
(2008)
Eur. Surveill.
, vol.13
-
-
Savini, G.1
Monaco, F.2
Calistri, P.3
Lelli, R.4
-
27
-
-
0034847192
-
The relationships between West Nile and Kunjin viruses
-
Scherret J.H., Poidinger M., Mackenzie J.S., Broom A.K., Deubel V., Lipkin W.I., Briese T., Gould E.A., and Hall R.A. The relationships between West Nile and Kunjin viruses. Emerg. Infect. Dis. 7 (2001) 697-705
-
(2001)
Emerg. Infect. Dis.
, vol.7
, pp. 697-705
-
-
Scherret, J.H.1
Poidinger, M.2
Mackenzie, J.S.3
Broom, A.K.4
Deubel, V.5
Lipkin, W.I.6
Briese, T.7
Gould, E.A.8
Hall, R.A.9
-
28
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt H., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
30
-
-
33847203633
-
Declining growth rate of West Nile virus in North America
-
Snapinn K.W., Holmes E.C., Young D.S., Bernard K.A., Kramer L.D., and Ebel G.D. Declining growth rate of West Nile virus in North America. J. Virol. 81 (2007) 2531-2534
-
(2007)
J. Virol.
, vol.81
, pp. 2531-2534
-
-
Snapinn, K.W.1
Holmes, E.C.2
Young, D.S.3
Bernard, K.A.4
Kramer, L.D.5
Ebel, G.D.6
-
31
-
-
0031002417
-
Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment
-
Strimmer K., and von Haeseler A. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94 (1997) 6815-6819
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6815-6819
-
-
Strimmer, K.1
von Haeseler, A.2
-
32
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
Suchard M., Weiss R., and Sincheimer J. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 18 (2001) 1001-1013
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1001-1013
-
-
Suchard, M.1
Weiss, R.2
Sincheimer, J.3
-
34
-
-
77954055201
-
Phylogeny inference based on parsimony and other methods with PAUP*
-
Lemey P., Salemi M., and Vandamme A. (Eds), Cambridge University Press, New York
-
Swofford D., and Sullivan J. Phylogeny inference based on parsimony and other methods with PAUP*. In: Lemey P., Salemi M., and Vandamme A. (Eds). The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing (2009), Cambridge University Press, New York
-
(2009)
The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing
-
-
Swofford, D.1
Sullivan, J.2
-
35
-
-
53749100397
-
Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005
-
Tang Y., Liu B., Hapip C., Xu D., and Fang C. Genetic analysis of West Nile virus isolates from US blood donors during 2002-2005. J. Clin. Virol. 43 (2008) 292-297
-
(2008)
J. Clin. Virol.
, vol.43
, pp. 292-297
-
-
Tang, Y.1
Liu, B.2
Hapip, C.3
Xu, D.4
Fang, C.5
-
36
-
-
0031574072
-
The CLUSTAL_X windows interface. Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface. Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
|