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Volumn 9, Issue 5, 2013, Pages

Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations

(34)  Band, Gavin a   Le, Quang Si a   Jostins, Luke b   Pirinen, Matti a   Kivinen, Katja b   Jallow, Muminatou c,d   Sisay Joof, Fatoumatta c   Bojang, Kalifa c   Pinder, Margaret c   Sirugo, Giorgio c   Conway, David J c,e   Nyirongo, Vysaul f   Kachala, David f   Molyneux, Malcolm f,g   Taylor, Terrie f   Ndila, Carolyne h   Peshu, Norbert h   Marsh, Kevin h   Williams, Thomas N h   Alcock, Daniel b   more..


Author keywords

[No Author keywords available]

Indexed keywords

HEMOGLOBIN S;

EID: 84878485201     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1003509     Document Type: Article
Times cited : (85)

References (45)
  • 1
    • 84856679687 scopus 로고    scopus 로고
    • Global malaria mortality between 1980 and 2010: a systematic analysis
    • Murray CJ, Rosenfeld LC, Lim SS, Andrews KG, Foreman KJ, et al. (2012) Global malaria mortality between 1980 and 2010: a systematic analysis. Lancet 379: 413-431.
    • (2012) Lancet , vol.379 , pp. 413-431
    • Murray, C.J.1    Rosenfeld, L.C.2    Lim, S.S.3    Andrews, K.G.4    Foreman, K.J.5
  • 2
    • 75649149885 scopus 로고    scopus 로고
    • Methodological challenges of genome-wide association analysis in Africa
    • Teo YY, Small KS, Kwiatkowski DP, (2010) Methodological challenges of genome-wide association analysis in Africa. Nat Rev Genet 11: 149-160.
    • (2010) Nat Rev Genet , vol.11 , pp. 149-160
    • Teo, Y.Y.1    Small, K.S.2    Kwiatkowski, D.P.3
  • 3
    • 79953738130 scopus 로고    scopus 로고
    • Quantifying the underestimation of relative risks from genome-wide association studies
    • doi:10.1371/journal.pgen.1002198
    • Spencer C, Hechter E, Vukcevic D, Donnelly P, (2011) Quantifying the underestimation of relative risks from genome-wide association studies. PLoS Genet 7: e1001337 doi:10.1371/journal.pgen.1002198.
    • (2011) PLoS Genet , vol.7
    • Spencer, C.1    Hechter, E.2    Vukcevic, D.3    Donnelly, P.4
  • 4
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • doi:10.1371/journal.pgen.1000529
    • Howie BN, Donnelly P, Marchini J, (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 5: e1000529 doi:10.1371/journal.pgen.1000529.
    • (2009) PLoS Genet , vol.5
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 6
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • Howie B, Marchini J, Stephens M, (2011) Genotype imputation with thousands of genomes. G3 (Bethesda) 1: 457-470.
    • (2011) G3 (Bethesda) , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 7
  • 8
    • 79956329346 scopus 로고    scopus 로고
    • Imputation of low-frequency variants using the HapMap3 benefits from large, diverse reference sets
    • Jostins L, Morley KI, Barrett JC, (2011) Imputation of low-frequency variants using the HapMap3 benefits from large, diverse reference sets. Eur J Hum Genet 19: 662-666.
    • (2011) Eur J Hum Genet , vol.19 , pp. 662-666
    • Jostins, L.1    Morley, K.I.2    Barrett, J.C.3
  • 9
    • 73349108482 scopus 로고    scopus 로고
    • A genealogical interpretation of principal components analysis
    • doi:10.1371/journal.pgen.1000686
    • McVean G, (2009) A genealogical interpretation of principal components analysis. PLoS Genet 5: e1000686 doi:10.1371/journal.pgen.1000686.
    • (2009) PLoS Genet , vol.5
    • McVean, G.1
  • 10
    • 67349278465 scopus 로고    scopus 로고
    • Genome-wide and fine-resolution association analysis of malaria in West Africa
    • Jallow M, Teo YY, Small KS, Rockett KA, Deloukas P, et al. (2009) Genome-wide and fine-resolution association analysis of malaria in West Africa. Nat Genet 41: 657-665.
    • (2009) Nat Genet , vol.41 , pp. 657-665
    • Jallow, M.1    Teo, Y.Y.2    Small, K.S.3    Rockett, K.A.4    Deloukas, P.5
  • 11
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • Price AL, Zaitlen NA, Reich D, Patterson N, (2010) New approaches to population stratification in genome-wide association studies. Nat Rev Genet 11: 459-463.
    • (2010) Nat Rev Genet , vol.11 , pp. 459-463
    • Price, A.L.1    Zaitlen, N.A.2    Reich, D.3    Patterson, N.4
  • 12
    • 84878493973 scopus 로고    scopus 로고
    • Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies
    • Pirinen M, Donnelly P, Spencer C, (2012) Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies. Ann Appl Stat (in press).
    • (2012) Ann Appl Stat
    • Pirinen, M.1    Donnelly, P.2    Spencer, C.3
  • 13
    • 77955166399 scopus 로고    scopus 로고
    • Population Structure and Cryptic Relatedness in Genetic Association Studies
    • Astle W, Balding DJ, (2009) Population Structure and Cryptic Relatedness in Genetic Association Studies. Statistical Science 24: 451-471.
    • (2009) Statistical Science , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 14
    • 58149345887 scopus 로고    scopus 로고
    • Practical aspects of imputation-driven meta-analysis of genome-wide association studies
    • de Bakker PI, Ferreira MA, Jia X, Neale BM, Raychaudhuri S, et al. (2008) Practical aspects of imputation-driven meta-analysis of genome-wide association studies. Hum Mol Genet 17: R122-128.
    • (2008) Hum Mol Genet , vol.17
    • de Bakker, P.I.1    Ferreira, M.A.2    Jia, X.3    Neale, B.M.4    Raychaudhuri, S.5
  • 15
    • 0037070775 scopus 로고    scopus 로고
    • Protective effects of the sickle cell gene against malaria morbidity and mortality
    • Aidoo M, Terlouw DJ, Kolczak MS, McElroy PD, ter Kuile FO, et al. (2002) Protective effects of the sickle cell gene against malaria morbidity and mortality. Lancet 359: 1311-1312.
    • (2002) Lancet , vol.359 , pp. 1311-1312
    • Aidoo, M.1    Terlouw, D.J.2    Kolczak, M.S.3    McElroy, P.D.4    ter Kuile, F.O.5
  • 17
    • 34547782270 scopus 로고    scopus 로고
    • A Bayesian measure of the probability of false discovery in genetic epidemiology studies
    • Wakefield J, (2007) A Bayesian measure of the probability of false discovery in genetic epidemiology studies. Am J Hum Genet 81: 208-227.
    • (2007) Am J Hum Genet , vol.81 , pp. 208-227
    • Wakefield, J.1
  • 18
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447: 661-678.
    • Nature , vol.447 , pp. 661-678
  • 19
    • 84863393715 scopus 로고    scopus 로고
    • Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke
    • Bellenguez C, Bevan S, Gschwendtner A, Spencer CC, Burgess AI, et al. (2012) Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke. Nat Genet.
    • (2012) Nat Genet
    • Bellenguez, C.1    Bevan, S.2    Gschwendtner, A.3    Spencer, C.C.4    Burgess, A.I.5
  • 20
    • 79955860273 scopus 로고    scopus 로고
    • Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies
    • Han B, Eskin E, (2011) Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. Am J Hum Genet 88: 586-598.
    • (2011) Am J Hum Genet , vol.88 , pp. 586-598
    • Han, B.1    Eskin, E.2
  • 21
    • 80051499915 scopus 로고    scopus 로고
    • Rare-variant association testing for sequencing data with the sequence kernel association test
    • Wu MC, Lee S, Cai T, Li Y, Boehnke M, et al. (2011) Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet 89: 82-93.
    • (2011) Am J Hum Genet , vol.89 , pp. 82-93
    • Wu, M.C.1    Lee, S.2    Cai, T.3    Li, Y.4    Boehnke, M.5
  • 22
    • 84858340640 scopus 로고    scopus 로고
    • A statistical method for region-based meta-analysis of genome-wide association studies in genetically diverse populations
    • Wang X, Liu X, Sim X, Xu H, Khor CC, et al. (2012) A statistical method for region-based meta-analysis of genome-wide association studies in genetically diverse populations. Eur J Hum Genet 20: 469-475.
    • (2012) Eur J Hum Genet , vol.20 , pp. 469-475
    • Wang, X.1    Liu, X.2    Sim, X.3    Xu, H.4    Khor, C.C.5
  • 24
    • 83055161438 scopus 로고    scopus 로고
    • New gene functions in megakaryopoiesis and platelet formation
    • Gieger C, Radhakrishnan A, Cvejic A, Tang W, Porcu E, et al. (2011) New gene functions in megakaryopoiesis and platelet formation. Nature 480: 201-208.
    • (2011) Nature , vol.480 , pp. 201-208
    • Gieger, C.1    Radhakrishnan, A.2    Cvejic, A.3    Tang, W.4    Porcu, E.5
  • 25
    • 70350644759 scopus 로고    scopus 로고
    • A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium
    • Soranzo N, Spector TD, Mangino M, Kuhnel B, Rendon A, et al. (2009) A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. Nat Genet 41: 1182-1190.
    • (2009) Nat Genet , vol.41 , pp. 1182-1190
    • Soranzo, N.1    Spector, T.D.2    Mangino, M.3    Kuhnel, B.4    Rendon, A.5
  • 26
    • 84866524806 scopus 로고    scopus 로고
    • Genome-wide association study indicates two novel resistance loci for severe malaria
    • Timmann C, Thye T, Vens M, Evans J, May J, et al. (2012) Genome-wide association study indicates two novel resistance loci for severe malaria. Nature.
    • (2012) Nature
    • Timmann, C.1    Thye, T.2    Vens, M.3    Evans, J.4    May, J.5
  • 27
    • 79960279940 scopus 로고    scopus 로고
    • Promise and pitfalls of the Immunochip
    • Cortes A, Brown MA, (2011) Promise and pitfalls of the Immunochip. Arthritis Res Ther 13: 101.
    • (2011) Arthritis Res Ther , vol.13 , pp. 101
    • Cortes, A.1    Brown, M.A.2
  • 28
    • 70350646902 scopus 로고    scopus 로고
    • Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium
    • Ganesh SK, Zakai NA, van Rooij FJ, Soranzo N, Smith AV, et al. (2009) Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. Nat Genet 41: 1191-1198.
    • (2009) Nat Genet , vol.41 , pp. 1191-1198
    • Ganesh, S.K.1    Zakai, N.A.2    van Rooij, F.J.3    Soranzo, N.4    Smith, A.V.5
  • 29
    • 79959824142 scopus 로고    scopus 로고
    • Multiple loci are associated with white blood cell phenotypes
    • doi:10.1371/journal.pgen.1002113
    • Nalls MA, Couper DJ, Tanaka T, van Rooij FJ, Chen MH, et al. (2011) Multiple loci are associated with white blood cell phenotypes. PLoS Genet 7: e1002113 doi:10.1371/journal.pgen.1002113.
    • (2011) PLoS Genet , vol.7
    • Nalls, M.A.1    Couper, D.J.2    Tanaka, T.3    van Rooij, F.J.4    Chen, M.H.5
  • 30
    • 79960899377 scopus 로고    scopus 로고
    • Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility
    • Evans DM, Spencer CC, Pointon JJ, Su Z, Harvey D, et al. (2011) Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. Nat Genet 43: 761-767.
    • (2011) Nat Genet , vol.43 , pp. 761-767
    • Evans, D.M.1    Spencer, C.C.2    Pointon, J.J.3    Su, Z.4    Harvey, D.5
  • 31
    • 77950243833 scopus 로고    scopus 로고
    • Multiple common variants for celiac disease influencing immune gene expression
    • Dubois PC, Trynka G, Franke L, Hunt KA, Romanos J, et al. (2010) Multiple common variants for celiac disease influencing immune gene expression. Nat Genet 42: 295-302.
    • (2010) Nat Genet , vol.42 , pp. 295-302
    • Dubois, P.C.1    Trynka, G.2    Franke, L.3    Hunt, K.A.4    Romanos, J.5
  • 32
    • 80051684615 scopus 로고    scopus 로고
    • Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis
    • Sawcer S, Hellenthal G, Pirinen M, Spencer CC, Patsopoulos NA, et al. (2011) Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature 476: 214-219.
    • (2011) Nature , vol.476 , pp. 214-219
    • Sawcer, S.1    Hellenthal, G.2    Pirinen, M.3    Spencer, C.C.4    Patsopoulos, N.A.5
  • 33
    • 79961193174 scopus 로고    scopus 로고
    • HAPGEN2: simulation of multiple disease SNPs
    • Su Z, Marchini J, Donnelly P, (2011) HAPGEN2: simulation of multiple disease SNPs. Bioinformatics 27: 2304-2305.
    • (2011) Bioinformatics , vol.27 , pp. 2304-2305
    • Su, Z.1    Marchini, J.2    Donnelly, P.3
  • 34
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip
    • doi:10.1371/journal.pgen.1000477
    • Spencer CC, Su Z, Donnelly P, Marchini J, (2009) Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 5: e1000477 doi:10.1371/journal.pgen.1000477.
    • (2009) PLoS Genet , vol.5
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3    Marchini, J.4
  • 35
    • 80052895204 scopus 로고    scopus 로고
    • A genome-wide association study reveals a quantitative trait locus of adiponectin on CDH13 that predicts cardiometabolic outcomes
    • Chung CM, Lin TH, Chen JW, Leu HB, Yang HC, et al. (2011) A genome-wide association study reveals a quantitative trait locus of adiponectin on CDH13 that predicts cardiometabolic outcomes. Diabetes 60: 2417-2423.
    • (2011) Diabetes , vol.60 , pp. 2417-2423
    • Chung, C.M.1    Lin, T.H.2    Chen, J.W.3    Leu, H.B.4    Yang, H.C.5
  • 36
    • 84859238629 scopus 로고    scopus 로고
    • Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals
    • doi:10.1371/journal.pgen.1002607
    • Dastani Z, Hivert MF, Timpson N, Perry JR, Yuan X, et al. (2012) Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. PLoS Genet 8: e1002607 doi:10.1371/journal.pgen.1002607.
    • (2012) PLoS Genet , vol.8
    • Dastani, Z.1    Hivert, M.F.2    Timpson, N.3    Perry, J.R.4    Yuan, X.5
  • 37
    • 17844394466 scopus 로고    scopus 로고
    • Negative regulation of lymphocyte activation by the adaptor protein LAX
    • Zhu M, Granillo O, Wen R, Yang K, Dai X, et al. (2005) Negative regulation of lymphocyte activation by the adaptor protein LAX. J Immunol 174: 5612-5619.
    • (2005) J Immunol , vol.174 , pp. 5612-5619
    • Zhu, M.1    Granillo, O.2    Wen, R.3    Yang, K.4    Dai, X.5
  • 38
    • 0034068284 scopus 로고    scopus 로고
    • Severe falciparum malaria. World Health Organization, Communicable Diseases Cluster
    • W.H.O
    • W.H.O (2000) Severe falciparum malaria. World Health Organization, Communicable Diseases Cluster. Trans R Soc Trop Med Hyg 94 Suppl 1: S1-90.
    • (2000) Trans R Soc Trop Med Hyg , vol.94 , Issue.SUPPL. , pp. 1-90
  • 40
    • 34247487405 scopus 로고    scopus 로고
    • Valid consent for genomic epidemiology in developing countries
    • doi:10.1371/journal.pmed.0040095
    • Chokshi DA, Thera MA, Parker M, Diakite M, Makani J, et al. (2007) Valid consent for genomic epidemiology in developing countries. PLoS Med 4: e95 doi:10.1371/journal.pmed.0040095.
    • (2007) PLoS Med , vol.4
    • Chokshi, D.A.1    Thera, M.A.2    Parker, M.3    Diakite, M.4    Makani, J.5
  • 42
    • 72949123257 scopus 로고    scopus 로고
    • Ethical data release in genome-wide association studies in developing countries
    • doi:10.1371/journal.pmed.1000143
    • Parker M, Bull SJ, de Vries J, Agbenyega T, Doumbo OK, et al. (2009) Ethical data release in genome-wide association studies in developing countries. PLoS Med 6: e1000143 doi:10.1371/journal.pmed.1000143.
    • (2009) PLoS Med , vol.6
    • Parker, M.1    Bull, S.J.2    de Vries, J.3    Agbenyega, T.4    Doumbo, O.K.5
  • 45
    • 67651205715 scopus 로고    scopus 로고
    • Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions
    • doi:10.1371/journal.pgen.1000534
    • Raychaudhuri S, Plenge RM, Rossin EJ, Ng AC, Purcell SM, et al. (2009) Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PLoS Genet 5: e1000534 doi:10.1371/journal.pgen.1000534.
    • (2009) PLoS Genet , vol.5
    • Raychaudhuri, S.1    Plenge, R.M.2    Rossin, E.J.3    Ng, A.C.4    Purcell, S.M.5


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