-
1
-
-
33748776559
-
Automated protein function prediction-the genomic challenge
-
Friedberg I, (2006) Automated protein function prediction-the genomic challenge. Brief Bioinform 7: 225-242.
-
(2006)
Brief Bioinform
, vol.7
, pp. 225-242
-
-
Friedberg, I.1
-
2
-
-
74549221383
-
Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies
-
Schnoes AM, Brown SD, Dodevski I, Babbitt PC, (2009) Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies. PLoS Comput Biol 5: e1000605+.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Schnoes, A.M.1
Brown, S.D.2
Dodevski, I.3
Babbitt, P.C.4
-
4
-
-
62549146620
-
Protein function prediction the power of multiplicity
-
Rentzsch R, Orengo CA, (2009) Protein function prediction the power of multiplicity. Trends in Biotechnology 27: 210-219.
-
(2009)
Trends in Biotechnology
, vol.27
, pp. 210-219
-
-
Rentzsch, R.1
Orengo, C.A.2
-
6
-
-
80052028523
-
The real cost of sequencing: higher than you think!
-
Sboner A, Mu X, Greenbaum D, Auerbach R, Gerstein M, (2011) The real cost of sequencing: higher than you think!. Genome Biology 12: 125+.
-
(2011)
Genome Biology
, vol.12
-
-
Sboner, A.1
Mu, X.2
Greenbaum, D.3
Auerbach, R.4
Gerstein, M.5
-
7
-
-
84862192725
-
The uniprot-go annotation database in 2011
-
Dimmer EC, Huntley RP, Alam-Faruque Y, Sawford T, O'Donovan C, et al. (2012) The uniprot-go annotation database in 2011. Nucleic Acids Research 40: D565-D570.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Dimmer, E.C.1
Huntley, R.P.2
Alam-Faruque, Y.3
Sawford, T.4
O'Donovan, C.5
-
8
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. Nature Genetics 25: 25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
9
-
-
41549148628
-
Toward a confocal subcellular atlas of the human proteome
-
Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, et al. (2008) Toward a confocal subcellular atlas of the human proteome. Mol Cell Proteomics 7: 499-508.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 499-508
-
-
Barbe, L.1
Lundberg, E.2
Oksvold, P.3
Stenius, A.4
Lewin, E.5
-
10
-
-
0034676457
-
Functional genomic analysis of C. elegans chromosome I by systematic RNA interference
-
Fraser AG, Kamath RS, Zipperlen P, Martinez-Campos M, Sohrmann M, et al. (2000) Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408: 325-330.
-
(2000)
Nature
, vol.408
, pp. 325-330
-
-
Fraser, A.G.1
Kamath, R.S.2
Zipperlen, P.3
Martinez-Campos, M.4
Sohrmann, M.5
-
11
-
-
0035128859
-
Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi
-
Maeda I, Kohara Y, Yamamoto M, Sugimoto A, (2001) Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr Biol 11: 171-176.
-
(2001)
Curr Biol
, vol.11
, pp. 171-176
-
-
Maeda, I.1
Kohara, Y.2
Yamamoto, M.3
Sugimoto, A.4
-
12
-
-
0037137443
-
Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans
-
Piano F, Schetter AJ, Morton DG, Gunsalus KC, Reinke V, et al. (2002) Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans. Curr Biol 12: 1959-1964.
-
(2002)
Curr Biol
, vol.12
, pp. 1959-1964
-
-
Piano, F.1
Schetter, A.J.2
Morton, D.G.3
Gunsalus, K.C.4
Reinke, V.5
-
13
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
-
14
-
-
34247468356
-
Genes required for mitotic spindle assembly in Drosophila S2 cells
-
Goshima G, Wollman R, Goodwin SS, Zhang N, Scholey JM, et al. (2007) Genes required for mitotic spindle assembly in Drosophila S2 cells. Science 316: 417-421.
-
(2007)
Science
, vol.316
, pp. 417-421
-
-
Goshima, G.1
Wollman, R.2
Goodwin, S.S.3
Zhang, N.4
Scholey, J.M.5
-
15
-
-
0037448528
-
Genomewide RNAi analysis of Caenorhabditis elegans fat regulatory genes
-
Ashrafi K, Chang FY, Watts JL, Fraser AG, Kamath RS, et al. (2003) Genomewide RNAi analysis of Caenorhabditis elegans fat regulatory genes. Nature 421: 268-272.
-
(2003)
Nature
, vol.421
, pp. 268-272
-
-
Ashrafi, K.1
Chang, F.Y.2
Watts, J.L.3
Fraser, A.G.4
Kamath, R.S.5
-
16
-
-
34548295310
-
Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic
-
Balklava Z, Pant S, Fares H, Grant BD, (2007) Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic. Nat Cell Biol 9: 1066-1073.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 1066-1073
-
-
Balklava, Z.1
Pant, S.2
Fares, H.3
Grant, B.D.4
-
17
-
-
43249123805
-
A microtubule interactome: complexes with roles in cell cycle and mitosis
-
Hughes JR, Meireles AM, Fisher KH, Garcia A, Antrobus PR, et al. (2008) A microtubule interactome: complexes with roles in cell cycle and mitosis. PLoS Biol 6: e98.
-
(2008)
PLoS Biol
, vol.6
-
-
Hughes, J.R.1
Meireles, A.M.2
Fisher, K.H.3
Garcia, A.4
Antrobus, P.R.5
-
18
-
-
84873593542
-
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
-
Wittkop T, TerAvest E, Evani U, Fleisch K, Berman A, et al. (2013) STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. BMC Bioinformatics 14: 53+.
-
(2013)
BMC Bioinformatics
, vol.14
-
-
Wittkop, T.1
TerAvest, E.2
Evani, U.3
Fleisch, K.4
Berman, A.5
-
19
-
-
84874663959
-
A largescale evaluation of computational protein function prediction
-
Radivojac P, Clark W, Ronnen-Oron T, Schnoes A, Wittkop T, et al. (2013) A largescale evaluation of computational protein function prediction. Nature Methods 10: 221-7.
-
(2013)
Nature Methods
, vol.10
, pp. 221-227
-
-
Radivojac, P.1
Clark, W.2
Ronnen-Oron, T.3
Schnoes, A.4
Wittkop, T.5
-
20
-
-
65649092976
-
Biopython: freely available python tools for computational molecular biology and bioinformatics
-
Cock P, Antao T, Chang J, Chapman B, Cox C, et al. (2009) Biopython: freely available python tools for computational molecular biology and bioinformatics. Bioinformatics 25: 1422.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422
-
-
Cock, P.1
Antao, T.2
Chang, J.3
Chapman, B.4
Cox, C.5
-
22
-
-
0030801002
-
Gapped blast and psi-blast: a new generation of protein database search programs
-
Altschul SF, Madden TL, Scḧaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic acids research 25: 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Scḧaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
23
-
-
0037480738
-
Investigating semantic similarity measures across the gene ontology: the relationship between sequence and annotation
-
Lord PW, Stevens RD, Brass A, Goble CA, (2003) Investigating semantic similarity measures across the gene ontology: the relationship between sequence and annotation. Bioinformatics 19: 1275-1283.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
24
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Pesquita C, Faria D, Falcão AO, Lord P, Couto FM, (2009) Semantic similarity in biomedical ontologies. PLoS Comput Biol 5: e1000443+.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Pesquita, C.1
Faria, D.2
Falcão, A.O.3
Lord, P.4
Couto, F.M.5
-
25
-
-
84864674779
-
Mining GO annotations for improving annotation consistency
-
Faria D, Schlicker A, Pesquita C, Bastos H, Ferreira AEN, et al. (2012) Mining GO annotations for improving annotation consistency. PLoS ONE 7: e40519+.
-
(2012)
PLoS ONE
, vol.7
-
-
Faria, D.1
Schlicker, A.2
Pesquita, C.3
Bastos, H.4
Ferreira, A.E.N.5
|