-
1
-
-
23944483135
-
Post-transcriptional control of gene expression: a genome-wide perspective
-
Mata J, Marguerat S, Bahler J, (2005) Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 30: 506-514.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
2
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
4
-
-
27744537851
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
-
Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R, (2005) Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
-
(2005)
Cell
, vol.123
, pp. 631-640
-
-
Gregory, R.I.1
Chendrimada, T.P.2
Cooch, N.3
Shiekhattar, R.4
-
5
-
-
0036544755
-
Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
-
Lai EC, (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30: 363-364.
-
(2002)
Nat Genet
, vol.30
, pp. 363-364
-
-
Lai, E.C.1
-
6
-
-
34250805982
-
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
-
7
-
-
45749154794
-
Molecular architecture of a miRNA-regulated 3′ UTR
-
Didiano D, Hobert O, (2008) Molecular architecture of a miRNA-regulated 3′ UTR. RNA 14: 1297-1317.
-
(2008)
RNA
, vol.14
, pp. 1297-1317
-
-
Didiano, D.1
Hobert, O.2
-
8
-
-
75649129058
-
Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3′UTR
-
Sun G, Li H, Rossi JJ, (2010) Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3′UTR. Nucleic Acids Res 38: 239-252.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 239-252
-
-
Sun, G.1
Li, H.2
Rossi, J.J.3
-
9
-
-
31144448042
-
AU-rich elements and associated factors: are there unifying principles?
-
Barreau C, Paillard L, Osborne HB, (2006) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res 33: 7138-7150.
-
(2006)
Nucleic Acids Res
, vol.33
, pp. 7138-7150
-
-
Barreau, C.1
Paillard, L.2
Osborne, H.B.3
-
10
-
-
42449120163
-
Decoding ARE-mediated decay: is microRNA part of the equation?
-
von Roretz C, Gallouzi IE, (2008) Decoding ARE-mediated decay: is microRNA part of the equation? J Cell Biol 181: 189-194.
-
(2008)
J Cell Biol
, vol.181
, pp. 189-194
-
-
von Roretz, C.1
Gallouzi, I.E.2
-
11
-
-
31144448042
-
AU-rich elements and associated factors: are there unifying principles?
-
Barreau C, Paillard L, Osborne HB, (2005) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res 33: 7138-7150.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 7138-7150
-
-
Barreau, C.1
Paillard, L.2
Osborne, H.B.3
-
12
-
-
0026337150
-
An A+U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro
-
Brewer G, (1991) An A+U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro. Mol Cell Biol 11: 2460-2466.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 2460-2466
-
-
Brewer, G.1
-
13
-
-
1442311533
-
Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d
-
Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright PE, (2004) Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d. Nat Struct Mol Biol 11: 257-264.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 257-264
-
-
Hudson, B.P.1
Martinez-Yamout, M.A.2
Dyson, H.J.3
Wright, P.E.4
-
14
-
-
18044371822
-
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
-
Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, et al. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107: 451-464.
-
(2001)
Cell
, vol.107
, pp. 451-464
-
-
Chen, C.Y.1
Gherzi, R.2
Ong, S.E.3
Chan, E.L.4
Raijmakers, R.5
-
15
-
-
0036498828
-
A PUF family portrait: 3′UTR regulation as a way of life
-
Wickens M, Bernstein DS, Kimble J, Parker R, (2002) A PUF family portrait: 3′UTR regulation as a way of life. Trends Genet 18: 150-157.
-
(2002)
Trends Genet
, vol.18
, pp. 150-157
-
-
Wickens, M.1
Bernstein, D.S.2
Kimble, J.3
Parker, R.4
-
16
-
-
0034388021
-
The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast
-
Olivas W, Parker R, (2000) The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. EMBO J 19: 6602-6611.
-
(2000)
EMBO J
, vol.19
, pp. 6602-6611
-
-
Olivas, W.1
Parker, R.2
-
17
-
-
33744946810
-
PUF proteins bind Pop2p to regulate messenger RNAs
-
Goldstrohm AC, Hook BA, Seay DJ, Wickens M, (2006) PUF proteins bind Pop2p to regulate messenger RNAs. Nat Struct Mol Biol 13: 533-539.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 533-539
-
-
Goldstrohm, A.C.1
Hook, B.A.2
Seay, D.J.3
Wickens, M.4
-
19
-
-
84878501988
-
Functional Interactions Between microRNAs and RNA Binding Proteins
-
Jiang P, Coller HA, (2012) Functional Interactions Between microRNAs and RNA Binding Proteins. MicroRNA 1: 70-79.
-
(2012)
MicroRNA
, vol.1
, pp. 70-79
-
-
Jiang, P.1
Coller, H.A.2
-
20
-
-
79960918737
-
Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability
-
Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, et al. (2011) Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability. Mol Cell 43: 327-339.
-
(2011)
Mol Cell
, vol.43
, pp. 327-339
-
-
Mukherjee, N.1
Corcoran, D.L.2
Nusbaum, J.D.3
Reid, D.W.4
Georgiev, S.5
-
21
-
-
77955167841
-
Signatures of RNA binding proteins globally coupled to effective microRNA target sites
-
Jacobsen A, Wen J, Marks DS, Krogh A, (2010) Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Res 20: 1010-1019.
-
(2010)
Genome Res
, vol.20
, pp. 1010-1019
-
-
Jacobsen, A.1
Wen, J.2
Marks, D.S.3
Krogh, A.4
-
22
-
-
52349122355
-
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
-
Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, et al. (2008) Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS One 3: e3164.
-
(2008)
PLoS One
, vol.3
-
-
Galgano, A.1
Forrer, M.2
Jaskiewicz, L.3
Kanitz, A.4
Zavolan, M.5
-
23
-
-
33744973775
-
Relief of microRNA-mediated translational repression in human cells subjected to stress
-
Bhattacharyya SN, Habermacher R, Martine U, Closs EI, Filipowicz W, (2006) Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125: 1111-1124.
-
(2006)
Cell
, vol.125
, pp. 1111-1124
-
-
Bhattacharyya, S.N.1
Habermacher, R.2
Martine, U.3
Closs, E.I.4
Filipowicz, W.5
-
24
-
-
38349118916
-
RNA-binding protein Dnd1 inhibits microRNA access to target mRNA
-
Kedde M, Strasser MJ, Boldajipour B, Oude Vrielink JA, Slanchev K, et al. (2007) RNA-binding protein Dnd1 inhibits microRNA access to target mRNA. Cell 131: 1273-1286.
-
(2007)
Cell
, vol.131
, pp. 1273-1286
-
-
Kedde, M.1
Strasser, M.J.2
Boldajipour, B.3
Oude Vrielink, J.A.4
Slanchev, K.5
-
25
-
-
67651083537
-
CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation
-
Elcheva I, Goswami S, Noubissi FK, Spiegelman VS, (2009) CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation. Mol Cell 35: 240-246.
-
(2009)
Mol Cell
, vol.35
, pp. 240-246
-
-
Elcheva, I.1
Goswami, S.2
Noubissi, F.K.3
Spiegelman, V.S.4
-
26
-
-
68149165414
-
HuR recruits let-7/RISC to repress c-Myc expression
-
Kim HH, Kuwano Y, Srikantan S, Lee EK, Martindale JL, et al. (2009) HuR recruits let-7/RISC to repress c-Myc expression. Genes Dev 23: 1743-1748.
-
(2009)
Genes Dev
, vol.23
, pp. 1743-1748
-
-
Kim, H.H.1
Kuwano, Y.2
Srikantan, S.3
Lee, E.K.4
Martindale, J.L.5
-
27
-
-
34247582864
-
The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3′UTR-mediated repression of the let-7 microRNA target gene, hbl-1
-
Nolde MJ, Saka N, Reinert KL, Slack FJ, (2007) The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3′UTR-mediated repression of the let-7 microRNA target gene, hbl-1. Dev Biol 305: 551-563.
-
(2007)
Dev Biol
, vol.305
, pp. 551-563
-
-
Nolde, M.J.1
Saka, N.2
Reinert, K.L.3
Slack, F.J.4
-
28
-
-
0036792769
-
Fragile X-related protein and VIG associate with the RNA interference machinery
-
Caudy AA, Myers M, Hannon GJ, Hammond SM, (2002) Fragile X-related protein and VIG associate with the RNA interference machinery. Genes Dev 16: 2491-2496.
-
(2002)
Genes Dev
, vol.16
, pp. 2491-2496
-
-
Caudy, A.A.1
Myers, M.2
Hannon, G.J.3
Hammond, S.M.4
-
29
-
-
77957564277
-
A Pumilio-induced RNA structure switch in p27-3′ UTR controls miR-221 and miR-222 accessibility
-
Kedde M, van Kouwenhove M, Zwart W, Oude Vrielink JA, Elkon R, et al. (2010) A Pumilio-induced RNA structure switch in p27-3′ UTR controls miR-221 and miR-222 accessibility. Nat Cell Biol 12: 1014-1020.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 1014-1020
-
-
Kedde, M.1
van Kouwenhove, M.2
Zwart, W.3
Oude Vrielink, J.A.4
Elkon, R.5
-
30
-
-
84857167551
-
Pumilio facilitates miRNA regulation of the E2F3 oncogene
-
Miles WO, Tschop K, Herr A, Ji JY, Dyson NJ, (2012) Pumilio facilitates miRNA regulation of the E2F3 oncogene. Genes Dev 26: 356-368.
-
(2012)
Genes Dev
, vol.26
, pp. 356-368
-
-
Miles, W.O.1
Tschop, K.2
Herr, A.3
Ji, J.Y.4
Dyson, N.J.5
-
31
-
-
84872601985
-
Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits
-
Xue Y, Ouyang K, Huang J, Zhou Y, Ouyang H, et al. (2013) Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits. Cell 152: 82-96.
-
(2013)
Cell
, vol.152
, pp. 82-96
-
-
Xue, Y.1
Ouyang, K.2
Huang, J.3
Zhou, Y.4
Ouyang, H.5
-
32
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
-
Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO, (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 6: e255.
-
(2008)
PLoS Biol
, vol.6
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
Herschlag, D.4
Brown, P.O.5
-
33
-
-
33750222859
-
Sequence-specific binding of single-stranded RNA: is there a code for recognition?
-
Auweter SD, Oberstrass FC, Allain FH, (2006) Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res 34: 4943-4959.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4943-4959
-
-
Auweter, S.D.1
Oberstrass, F.C.2
Allain, F.H.3
-
34
-
-
67650484984
-
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
-
Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, et al. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol 27: 667-670.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 667-670
-
-
Ray, D.1
Kazan, H.2
Chan, E.T.3
Pena Castillo, L.4
Chaudhry, S.5
-
35
-
-
0037162703
-
Modular recognition of RNA by a human pumilio-homology domain
-
Wang X, McLachlan J, Zamore PD, Hall TM, (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110: 501-512.
-
(2002)
Cell
, vol.110
, pp. 501-512
-
-
Wang, X.1
McLachlan, J.2
Zamore, P.D.3
Hall, T.M.4
-
36
-
-
79960230895
-
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
-
Zhang CL, Darnell RB, (2011) Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. Nat Biotechnol 29: 607-U686.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 607-686
-
-
Zhang, C.L.1
Darnell, R.B.2
-
37
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
-
38
-
-
38849171836
-
Reliable prediction of regulator targets using 12 Drosophila genomes
-
Kheradpour P, Stark A, Roy S, Kellis M, (2007) Reliable prediction of regulator targets using 12 Drosophila genomes. Genome Res 17: 1919-1931.
-
(2007)
Genome Res
, vol.17
, pp. 1919-1931
-
-
Kheradpour, P.1
Stark, A.2
Roy, S.3
Kellis, M.4
-
39
-
-
30444446153
-
Molecular basis of RNA recognition by the human alternative splicing factor Fox-1
-
Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, et al. (2006) Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J 25: 163-173.
-
(2006)
EMBO J
, vol.25
, pp. 163-173
-
-
Auweter, S.D.1
Fasan, R.2
Reymond, L.3
Underwood, J.G.4
Black, D.L.5
-
40
-
-
33744958662
-
Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16
-
Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, et al. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem 281: 12468-12474.
-
(2006)
J Biol Chem
, vol.281
, pp. 12468-12474
-
-
Ponthier, J.L.1
Schluepen, C.2
Chen, W.3
Lersch, R.A.4
Gee, S.L.5
-
41
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
-
42
-
-
0027471377
-
The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA
-
Boelens WC, Jansen EJ, van Venrooij WJ, Stripecke R, Mattaj IW, et al. (1993) The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA. Cell 72: 881-892.
-
(1993)
Cell
, vol.72
, pp. 881-892
-
-
Boelens, W.C.1
Jansen, E.J.2
van Venrooij, W.J.3
Stripecke, R.4
Mattaj, I.W.5
-
43
-
-
0028004607
-
Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge C, Ito N, Evans PR, Teo CH, Nagai K, (1994) Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372: 432-438.
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
Ito, N.2
Evans, P.R.3
Teo, C.H.4
Nagai, K.5
-
44
-
-
3142615474
-
RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs
-
Brewer BY, Malicka J, Blackshear P, Wilson GM, (2004) RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs. J Biol Chem 279: 27870-27877.
-
(2004)
J Biol Chem
, vol.279
, pp. 27870-27877
-
-
Brewer, B.Y.1
Malicka, J.2
Blackshear, P.3
Wilson, G.M.4
-
45
-
-
0032514483
-
Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA
-
Price SR, Evans PR, Nagai K, (1998) Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA. Nature 394: 645-650.
-
(1998)
Nature
, vol.394
, pp. 645-650
-
-
Price, S.R.1
Evans, P.R.2
Nagai, K.3
-
46
-
-
70849124572
-
Fox-1 family of RNA-binding proteins
-
Kuroyanagi H, (2009) Fox-1 family of RNA-binding proteins. Cell Mol Life Sci 66: 3895-3907.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 3895-3907
-
-
Kuroyanagi, H.1
-
47
-
-
59649107040
-
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
-
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, et al. (2009) An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol 16: 130-137.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 130-137
-
-
Yeo, G.W.1
Coufal, N.G.2
Liang, T.Y.3
Peng, G.E.4
Fu, X.D.5
-
48
-
-
34347393301
-
Spatial preferences of microRNA targets in 3′ untranslated regions
-
Majoros WH, Ohler U, (2007) Spatial preferences of microRNA targets in 3′ untranslated regions. BMC Genomics 8: 152.
-
(2007)
BMC Genomics
, vol.8
, pp. 152
-
-
Majoros, W.H.1
Ohler, U.2
-
49
-
-
34347398567
-
Inference of miRNA targets using evolutionary conservation and pathway analysis
-
Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M, (2007) Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8: 69.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 69
-
-
Gaidatzis, D.1
van Nimwegen, E.2
Hausser, J.3
Zavolan, M.4
-
50
-
-
0142119568
-
The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function?
-
Spassov DS, Jurecic R, (2003) The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function? IUBMB Life 55: 359-366.
-
(2003)
IUBMB Life
, vol.55
, pp. 359-366
-
-
Spassov, D.S.1
Jurecic, R.2
-
51
-
-
0035677768
-
PUM2, a novel murine puf protein, and its consensus RNA-binding site
-
White EK, Moore-Jarrett T, Ruley HE, (2001) PUM2, a novel murine puf protein, and its consensus RNA-binding site. RNA 7: 1855-1866.
-
(2001)
RNA
, vol.7
, pp. 1855-1866
-
-
White, E.K.1
Moore-Jarrett, T.2
Ruley, H.E.3
-
52
-
-
33645217973
-
Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
-
Gerber AP, Luschnig S, Krasnow MA, Brown PO, Herschlag D, (2006) Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A 103: 4487-4492.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 4487-4492
-
-
Gerber, A.P.1
Luschnig, S.2
Krasnow, M.A.3
Brown, P.O.4
Herschlag, D.5
-
53
-
-
15444365620
-
Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1
-
Bernstein D, Hook B, Hajarnavis A, Opperman L, Wickens M, (2005) Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 11: 447-458.
-
(2005)
RNA
, vol.11
, pp. 447-458
-
-
Bernstein, D.1
Hook, B.2
Hajarnavis, A.3
Opperman, L.4
Wickens, M.5
-
54
-
-
33845431240
-
Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts
-
Lai WS, Parker JS, Grissom SF, Stumpo DJ, Blackshear PJ, (2006) Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts. Mol Cell Biol 26: 9196-9208.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 9196-9208
-
-
Lai, W.S.1
Parker, J.S.2
Grissom, S.F.3
Stumpo, D.J.4
Blackshear, P.J.5
-
55
-
-
34249092299
-
Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo
-
De Renzis S, Elemento O, Tavazoie S, Wieschaus EF, (2007) Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. PLoS Biol 5: e117.
-
(2007)
PLoS Biol
, vol.5
-
-
de Renzis, S.1
Elemento, O.2
Tavazoie, S.3
Wieschaus, E.F.4
-
56
-
-
0035868643
-
Inhibition of touch cell fate by egl-44 and egl-46 in C. elegans
-
Wu J, Duggan A, Chalfie M, (2001) Inhibition of touch cell fate by egl-44 and egl-46 in C. elegans. Genes Dev 15: 789-802.
-
(2001)
Genes Dev
, vol.15
, pp. 789-802
-
-
Wu, J.1
Duggan, A.2
Chalfie, M.3
-
58
-
-
73049097101
-
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
-
Friedel CC, Dolken L, Ruzsics Z, Koszinowski UH, Zimmer R, (2009) Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic Acids Res 37: e115.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Friedel, C.C.1
Dolken, L.2
Ruzsics, Z.3
Koszinowski, U.H.4
Zimmer, R.5
-
59
-
-
0041523923
-
Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes
-
Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, et al. (2003) Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res 13: 1863-1872.
-
(2003)
Genome Res
, vol.13
, pp. 1863-1872
-
-
Yang, E.1
van Nimwegen, E.2
Zavolan, M.3
Rajewsky, N.4
Schroeder, M.5
-
60
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
-
61
-
-
77956814633
-
Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
-
Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, et al. (2010) Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68. Journal of Virology 84: 10266-10275.
-
(2010)
Journal of Virology
, vol.84
, pp. 10266-10275
-
-
Zhu, J.Y.1
Strehle, M.2
Frohn, A.3
Kremmer, E.4
Hofig, K.P.5
-
62
-
-
60549115605
-
Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
-
Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs. Nature 457: 1028-1032.
-
Nature
, vol.457
, pp. 1028-1032
-
-
-
63
-
-
79952600794
-
A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3′-untranslated regions
-
Leibovich L, Mandel-Gutfreund Y, Yakhini Z, (2010) A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3′-untranslated regions. Silence 1: 17.
-
(2010)
Silence
, vol.1
, pp. 17
-
-
Leibovich, L.1
Mandel-Gutfreund, Y.2
Yakhini, Z.3
-
64
-
-
34249772381
-
Fast Folding and Comparison of RNA Secondary Structures
-
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer S, Tacker M, (1994) Fast Folding and Comparison of RNA Secondary Structures. Monatshefte f Chemie 125: 167-188.
-
(1994)
Monatshefte F Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, S.4
Tacker, M.5
-
65
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E, (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
66
-
-
0022360113
-
Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage
-
Altschul SF, Erickson BW, (1985) Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage. Mol Biol Evol 2: 526-538.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 526-538
-
-
Altschul, S.F.1
Erickson, B.W.2
-
67
-
-
0033572893
-
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
-
Krogh A, Workman C, (1999) No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. Nucleic Acids Res 27: 4816-4822.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4816-4822
-
-
Krogh, A.1
Workman, C.2
-
68
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS, (1981) Identification of common molecular subsequences. J Mol Biol 147: 195-197.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
69
-
-
77953563697
-
The code within the code: microRNAs target coding regions
-
Forman JJ, Coller HA, (2010) The code within the code: microRNAs target coding regions. Cell Cycle 9: 1533-1541.
-
(2010)
Cell Cycle
, vol.9
, pp. 1533-1541
-
-
Forman, J.J.1
Coller, H.A.2
-
70
-
-
0034069495
-
Gene ontology: tool for the unification of biology. the gene ontology consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, (2000) Gene ontology: tool for the unification of biology. the gene ontology consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
72
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB, (2003) Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
|