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Volumn 9, Issue 5, 2013, Pages

Computational Assessment of the Cooperativity between RNA Binding Proteins and MicroRNAs in Transcript Decay

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALS; PROTEINS; RNA;

EID: 84878480000     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003075     Document Type: Article
Times cited : (30)

References (72)
  • 1
    • 23944483135 scopus 로고    scopus 로고
    • Post-transcriptional control of gene expression: a genome-wide perspective
    • Mata J, Marguerat S, Bahler J, (2005) Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 30: 506-514.
    • (2005) Trends Biochem Sci , vol.30 , pp. 506-514
    • Mata, J.1    Marguerat, S.2    Bahler, J.3
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 4
    • 27744537851 scopus 로고    scopus 로고
    • Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
    • Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R, (2005) Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
    • (2005) Cell , vol.123 , pp. 631-640
    • Gregory, R.I.1    Chendrimada, T.P.2    Cooch, N.3    Shiekhattar, R.4
  • 5
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
    • Lai EC, (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30: 363-364.
    • (2002) Nat Genet , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 6
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5
  • 7
    • 45749154794 scopus 로고    scopus 로고
    • Molecular architecture of a miRNA-regulated 3′ UTR
    • Didiano D, Hobert O, (2008) Molecular architecture of a miRNA-regulated 3′ UTR. RNA 14: 1297-1317.
    • (2008) RNA , vol.14 , pp. 1297-1317
    • Didiano, D.1    Hobert, O.2
  • 8
    • 75649129058 scopus 로고    scopus 로고
    • Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3′UTR
    • Sun G, Li H, Rossi JJ, (2010) Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3′UTR. Nucleic Acids Res 38: 239-252.
    • (2010) Nucleic Acids Res , vol.38 , pp. 239-252
    • Sun, G.1    Li, H.2    Rossi, J.J.3
  • 9
    • 31144448042 scopus 로고    scopus 로고
    • AU-rich elements and associated factors: are there unifying principles?
    • Barreau C, Paillard L, Osborne HB, (2006) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res 33: 7138-7150.
    • (2006) Nucleic Acids Res , vol.33 , pp. 7138-7150
    • Barreau, C.1    Paillard, L.2    Osborne, H.B.3
  • 10
    • 42449120163 scopus 로고    scopus 로고
    • Decoding ARE-mediated decay: is microRNA part of the equation?
    • von Roretz C, Gallouzi IE, (2008) Decoding ARE-mediated decay: is microRNA part of the equation? J Cell Biol 181: 189-194.
    • (2008) J Cell Biol , vol.181 , pp. 189-194
    • von Roretz, C.1    Gallouzi, I.E.2
  • 11
    • 31144448042 scopus 로고    scopus 로고
    • AU-rich elements and associated factors: are there unifying principles?
    • Barreau C, Paillard L, Osborne HB, (2005) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res 33: 7138-7150.
    • (2005) Nucleic Acids Res , vol.33 , pp. 7138-7150
    • Barreau, C.1    Paillard, L.2    Osborne, H.B.3
  • 12
    • 0026337150 scopus 로고
    • An A+U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro
    • Brewer G, (1991) An A+U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro. Mol Cell Biol 11: 2460-2466.
    • (1991) Mol Cell Biol , vol.11 , pp. 2460-2466
    • Brewer, G.1
  • 14
    • 18044371822 scopus 로고    scopus 로고
    • AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
    • Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, et al. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell 107: 451-464.
    • (2001) Cell , vol.107 , pp. 451-464
    • Chen, C.Y.1    Gherzi, R.2    Ong, S.E.3    Chan, E.L.4    Raijmakers, R.5
  • 15
    • 0036498828 scopus 로고    scopus 로고
    • A PUF family portrait: 3′UTR regulation as a way of life
    • Wickens M, Bernstein DS, Kimble J, Parker R, (2002) A PUF family portrait: 3′UTR regulation as a way of life. Trends Genet 18: 150-157.
    • (2002) Trends Genet , vol.18 , pp. 150-157
    • Wickens, M.1    Bernstein, D.S.2    Kimble, J.3    Parker, R.4
  • 16
    • 0034388021 scopus 로고    scopus 로고
    • The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast
    • Olivas W, Parker R, (2000) The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. EMBO J 19: 6602-6611.
    • (2000) EMBO J , vol.19 , pp. 6602-6611
    • Olivas, W.1    Parker, R.2
  • 19
    • 84878501988 scopus 로고    scopus 로고
    • Functional Interactions Between microRNAs and RNA Binding Proteins
    • Jiang P, Coller HA, (2012) Functional Interactions Between microRNAs and RNA Binding Proteins. MicroRNA 1: 70-79.
    • (2012) MicroRNA , vol.1 , pp. 70-79
    • Jiang, P.1    Coller, H.A.2
  • 20
    • 79960918737 scopus 로고    scopus 로고
    • Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability
    • Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, et al. (2011) Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability. Mol Cell 43: 327-339.
    • (2011) Mol Cell , vol.43 , pp. 327-339
    • Mukherjee, N.1    Corcoran, D.L.2    Nusbaum, J.D.3    Reid, D.W.4    Georgiev, S.5
  • 21
    • 77955167841 scopus 로고    scopus 로고
    • Signatures of RNA binding proteins globally coupled to effective microRNA target sites
    • Jacobsen A, Wen J, Marks DS, Krogh A, (2010) Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Res 20: 1010-1019.
    • (2010) Genome Res , vol.20 , pp. 1010-1019
    • Jacobsen, A.1    Wen, J.2    Marks, D.S.3    Krogh, A.4
  • 22
    • 52349122355 scopus 로고    scopus 로고
    • Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
    • Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, et al. (2008) Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS One 3: e3164.
    • (2008) PLoS One , vol.3
    • Galgano, A.1    Forrer, M.2    Jaskiewicz, L.3    Kanitz, A.4    Zavolan, M.5
  • 23
    • 33744973775 scopus 로고    scopus 로고
    • Relief of microRNA-mediated translational repression in human cells subjected to stress
    • Bhattacharyya SN, Habermacher R, Martine U, Closs EI, Filipowicz W, (2006) Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125: 1111-1124.
    • (2006) Cell , vol.125 , pp. 1111-1124
    • Bhattacharyya, S.N.1    Habermacher, R.2    Martine, U.3    Closs, E.I.4    Filipowicz, W.5
  • 25
    • 67651083537 scopus 로고    scopus 로고
    • CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation
    • Elcheva I, Goswami S, Noubissi FK, Spiegelman VS, (2009) CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation. Mol Cell 35: 240-246.
    • (2009) Mol Cell , vol.35 , pp. 240-246
    • Elcheva, I.1    Goswami, S.2    Noubissi, F.K.3    Spiegelman, V.S.4
  • 27
    • 34247582864 scopus 로고    scopus 로고
    • The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3′UTR-mediated repression of the let-7 microRNA target gene, hbl-1
    • Nolde MJ, Saka N, Reinert KL, Slack FJ, (2007) The Caenorhabditis elegans pumilio homolog, puf-9, is required for the 3′UTR-mediated repression of the let-7 microRNA target gene, hbl-1. Dev Biol 305: 551-563.
    • (2007) Dev Biol , vol.305 , pp. 551-563
    • Nolde, M.J.1    Saka, N.2    Reinert, K.L.3    Slack, F.J.4
  • 28
    • 0036792769 scopus 로고    scopus 로고
    • Fragile X-related protein and VIG associate with the RNA interference machinery
    • Caudy AA, Myers M, Hannon GJ, Hammond SM, (2002) Fragile X-related protein and VIG associate with the RNA interference machinery. Genes Dev 16: 2491-2496.
    • (2002) Genes Dev , vol.16 , pp. 2491-2496
    • Caudy, A.A.1    Myers, M.2    Hannon, G.J.3    Hammond, S.M.4
  • 29
    • 77957564277 scopus 로고    scopus 로고
    • A Pumilio-induced RNA structure switch in p27-3′ UTR controls miR-221 and miR-222 accessibility
    • Kedde M, van Kouwenhove M, Zwart W, Oude Vrielink JA, Elkon R, et al. (2010) A Pumilio-induced RNA structure switch in p27-3′ UTR controls miR-221 and miR-222 accessibility. Nat Cell Biol 12: 1014-1020.
    • (2010) Nat Cell Biol , vol.12 , pp. 1014-1020
    • Kedde, M.1    van Kouwenhove, M.2    Zwart, W.3    Oude Vrielink, J.A.4    Elkon, R.5
  • 30
    • 84857167551 scopus 로고    scopus 로고
    • Pumilio facilitates miRNA regulation of the E2F3 oncogene
    • Miles WO, Tschop K, Herr A, Ji JY, Dyson NJ, (2012) Pumilio facilitates miRNA regulation of the E2F3 oncogene. Genes Dev 26: 356-368.
    • (2012) Genes Dev , vol.26 , pp. 356-368
    • Miles, W.O.1    Tschop, K.2    Herr, A.3    Ji, J.Y.4    Dyson, N.J.5
  • 31
    • 84872601985 scopus 로고    scopus 로고
    • Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits
    • Xue Y, Ouyang K, Huang J, Zhou Y, Ouyang H, et al. (2013) Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits. Cell 152: 82-96.
    • (2013) Cell , vol.152 , pp. 82-96
    • Xue, Y.1    Ouyang, K.2    Huang, J.3    Zhou, Y.4    Ouyang, H.5
  • 32
    • 54949148332 scopus 로고    scopus 로고
    • Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    • Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO, (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 6: e255.
    • (2008) PLoS Biol , vol.6
    • Hogan, D.J.1    Riordan, D.P.2    Gerber, A.P.3    Herschlag, D.4    Brown, P.O.5
  • 33
    • 33750222859 scopus 로고    scopus 로고
    • Sequence-specific binding of single-stranded RNA: is there a code for recognition?
    • Auweter SD, Oberstrass FC, Allain FH, (2006) Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res 34: 4943-4959.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4943-4959
    • Auweter, S.D.1    Oberstrass, F.C.2    Allain, F.H.3
  • 34
    • 67650484984 scopus 로고    scopus 로고
    • Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
    • Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, et al. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol 27: 667-670.
    • (2009) Nat Biotechnol , vol.27 , pp. 667-670
    • Ray, D.1    Kazan, H.2    Chan, E.T.3    Pena Castillo, L.4    Chaudhry, S.5
  • 35
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human pumilio-homology domain
    • Wang X, McLachlan J, Zamore PD, Hall TM, (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110: 501-512.
    • (2002) Cell , vol.110 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.4
  • 36
    • 79960230895 scopus 로고    scopus 로고
    • Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
    • Zhang CL, Darnell RB, (2011) Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. Nat Biotechnol 29: 607-U686.
    • (2011) Nat Biotechnol , vol.29 , pp. 607-686
    • Zhang, C.L.1    Darnell, R.B.2
  • 37
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1    Landthaler, M.2    Burger, L.3    Khorshid, M.4    Hausser, J.5
  • 38
    • 38849171836 scopus 로고    scopus 로고
    • Reliable prediction of regulator targets using 12 Drosophila genomes
    • Kheradpour P, Stark A, Roy S, Kellis M, (2007) Reliable prediction of regulator targets using 12 Drosophila genomes. Genome Res 17: 1919-1931.
    • (2007) Genome Res , vol.17 , pp. 1919-1931
    • Kheradpour, P.1    Stark, A.2    Roy, S.3    Kellis, M.4
  • 39
    • 30444446153 scopus 로고    scopus 로고
    • Molecular basis of RNA recognition by the human alternative splicing factor Fox-1
    • Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, et al. (2006) Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J 25: 163-173.
    • (2006) EMBO J , vol.25 , pp. 163-173
    • Auweter, S.D.1    Fasan, R.2    Reymond, L.3    Underwood, J.G.4    Black, D.L.5
  • 40
    • 33744958662 scopus 로고    scopus 로고
    • Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16
    • Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, et al. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem 281: 12468-12474.
    • (2006) J Biol Chem , vol.281 , pp. 12468-12474
    • Ponthier, J.L.1    Schluepen, C.2    Chen, W.3    Lersch, R.A.4    Gee, S.L.5
  • 41
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue transcriptomes
    • Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1    Sandberg, R.2    Luo, S.3    Khrebtukova, I.4    Zhang, L.5
  • 42
    • 0027471377 scopus 로고
    • The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA
    • Boelens WC, Jansen EJ, van Venrooij WJ, Stripecke R, Mattaj IW, et al. (1993) The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA. Cell 72: 881-892.
    • (1993) Cell , vol.72 , pp. 881-892
    • Boelens, W.C.1    Jansen, E.J.2    van Venrooij, W.J.3    Stripecke, R.4    Mattaj, I.W.5
  • 43
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
    • Oubridge C, Ito N, Evans PR, Teo CH, Nagai K, (1994) Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372: 432-438.
    • (1994) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.R.3    Teo, C.H.4    Nagai, K.5
  • 44
    • 3142615474 scopus 로고    scopus 로고
    • RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs
    • Brewer BY, Malicka J, Blackshear P, Wilson GM, (2004) RNA sequence elements required for high affinity binding by the zinc finger domain of tristetraprolin: conformational changes coupled to the bipartite nature of Au-rich MRNA-destabilizing motifs. J Biol Chem 279: 27870-27877.
    • (2004) J Biol Chem , vol.279 , pp. 27870-27877
    • Brewer, B.Y.1    Malicka, J.2    Blackshear, P.3    Wilson, G.M.4
  • 45
    • 0032514483 scopus 로고    scopus 로고
    • Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA
    • Price SR, Evans PR, Nagai K, (1998) Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA. Nature 394: 645-650.
    • (1998) Nature , vol.394 , pp. 645-650
    • Price, S.R.1    Evans, P.R.2    Nagai, K.3
  • 46
    • 70849124572 scopus 로고    scopus 로고
    • Fox-1 family of RNA-binding proteins
    • Kuroyanagi H, (2009) Fox-1 family of RNA-binding proteins. Cell Mol Life Sci 66: 3895-3907.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 3895-3907
    • Kuroyanagi, H.1
  • 47
    • 59649107040 scopus 로고    scopus 로고
    • An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
    • Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, et al. (2009) An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol 16: 130-137.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 130-137
    • Yeo, G.W.1    Coufal, N.G.2    Liang, T.Y.3    Peng, G.E.4    Fu, X.D.5
  • 48
    • 34347393301 scopus 로고    scopus 로고
    • Spatial preferences of microRNA targets in 3′ untranslated regions
    • Majoros WH, Ohler U, (2007) Spatial preferences of microRNA targets in 3′ untranslated regions. BMC Genomics 8: 152.
    • (2007) BMC Genomics , vol.8 , pp. 152
    • Majoros, W.H.1    Ohler, U.2
  • 49
    • 34347398567 scopus 로고    scopus 로고
    • Inference of miRNA targets using evolutionary conservation and pathway analysis
    • Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M, (2007) Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8: 69.
    • (2007) BMC Bioinformatics , vol.8 , pp. 69
    • Gaidatzis, D.1    van Nimwegen, E.2    Hausser, J.3    Zavolan, M.4
  • 50
    • 0142119568 scopus 로고    scopus 로고
    • The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function?
    • Spassov DS, Jurecic R, (2003) The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function? IUBMB Life 55: 359-366.
    • (2003) IUBMB Life , vol.55 , pp. 359-366
    • Spassov, D.S.1    Jurecic, R.2
  • 51
    • 0035677768 scopus 로고    scopus 로고
    • PUM2, a novel murine puf protein, and its consensus RNA-binding site
    • White EK, Moore-Jarrett T, Ruley HE, (2001) PUM2, a novel murine puf protein, and its consensus RNA-binding site. RNA 7: 1855-1866.
    • (2001) RNA , vol.7 , pp. 1855-1866
    • White, E.K.1    Moore-Jarrett, T.2    Ruley, H.E.3
  • 52
    • 33645217973 scopus 로고    scopus 로고
    • Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
    • Gerber AP, Luschnig S, Krasnow MA, Brown PO, Herschlag D, (2006) Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A 103: 4487-4492.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4487-4492
    • Gerber, A.P.1    Luschnig, S.2    Krasnow, M.A.3    Brown, P.O.4    Herschlag, D.5
  • 53
    • 15444365620 scopus 로고    scopus 로고
    • Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1
    • Bernstein D, Hook B, Hajarnavis A, Opperman L, Wickens M, (2005) Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 11: 447-458.
    • (2005) RNA , vol.11 , pp. 447-458
    • Bernstein, D.1    Hook, B.2    Hajarnavis, A.3    Opperman, L.4    Wickens, M.5
  • 54
    • 33845431240 scopus 로고    scopus 로고
    • Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts
    • Lai WS, Parker JS, Grissom SF, Stumpo DJ, Blackshear PJ, (2006) Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts. Mol Cell Biol 26: 9196-9208.
    • (2006) Mol Cell Biol , vol.26 , pp. 9196-9208
    • Lai, W.S.1    Parker, J.S.2    Grissom, S.F.3    Stumpo, D.J.4    Blackshear, P.J.5
  • 55
    • 34249092299 scopus 로고    scopus 로고
    • Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo
    • De Renzis S, Elemento O, Tavazoie S, Wieschaus EF, (2007) Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. PLoS Biol 5: e117.
    • (2007) PLoS Biol , vol.5
    • de Renzis, S.1    Elemento, O.2    Tavazoie, S.3    Wieschaus, E.F.4
  • 56
    • 0035868643 scopus 로고    scopus 로고
    • Inhibition of touch cell fate by egl-44 and egl-46 in C. elegans
    • Wu J, Duggan A, Chalfie M, (2001) Inhibition of touch cell fate by egl-44 and egl-46 in C. elegans. Genes Dev 15: 789-802.
    • (2001) Genes Dev , vol.15 , pp. 789-802
    • Wu, J.1    Duggan, A.2    Chalfie, M.3
  • 59
    • 0041523923 scopus 로고    scopus 로고
    • Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes
    • Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, et al. (2003) Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res 13: 1863-1872.
    • (2003) Genome Res , vol.13 , pp. 1863-1872
    • Yang, E.1    van Nimwegen, E.2    Zavolan, M.3    Rajewsky, N.4    Schroeder, M.5
  • 60
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian microRNA expression atlas based on small RNA library sequencing
    • Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, et al. (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414.
    • (2007) Cell , vol.129 , pp. 1401-1414
    • Landgraf, P.1    Rusu, M.2    Sheridan, R.3    Sewer, A.4    Iovino, N.5
  • 61
    • 77956814633 scopus 로고    scopus 로고
    • Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
    • Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, et al. (2010) Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68. Journal of Virology 84: 10266-10275.
    • (2010) Journal of Virology , vol.84 , pp. 10266-10275
    • Zhu, J.Y.1    Strehle, M.2    Frohn, A.3    Kremmer, E.4    Hofig, K.P.5
  • 62
    • 60549115605 scopus 로고    scopus 로고
    • Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
    • Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs. Nature 457: 1028-1032.
    • Nature , vol.457 , pp. 1028-1032
  • 63
    • 79952600794 scopus 로고    scopus 로고
    • A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3′-untranslated regions
    • Leibovich L, Mandel-Gutfreund Y, Yakhini Z, (2010) A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3′-untranslated regions. Silence 1: 17.
    • (2010) Silence , vol.1 , pp. 17
    • Leibovich, L.1    Mandel-Gutfreund, Y.2    Yakhini, Z.3
  • 65
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E, (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
    • (2007) Nat Genet , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 66
    • 0022360113 scopus 로고
    • Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage
    • Altschul SF, Erickson BW, (1985) Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage. Mol Biol Evol 2: 526-538.
    • (1985) Mol Biol Evol , vol.2 , pp. 526-538
    • Altschul, S.F.1    Erickson, B.W.2
  • 67
    • 0033572893 scopus 로고    scopus 로고
    • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
    • Krogh A, Workman C, (1999) No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. Nucleic Acids Res 27: 4816-4822.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4816-4822
    • Krogh, A.1    Workman, C.2
  • 68
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS, (1981) Identification of common molecular subsequences. J Mol Biol 147: 195-197.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 69
    • 77953563697 scopus 로고    scopus 로고
    • The code within the code: microRNAs target coding regions
    • Forman JJ, Coller HA, (2010) The code within the code: microRNAs target coding regions. Cell Cycle 9: 1533-1541.
    • (2010) Cell Cycle , vol.9 , pp. 1533-1541
    • Forman, J.J.1    Coller, H.A.2
  • 70
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. the gene ontology consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, (2000) Gene ontology: tool for the unification of biology. the gene ontology consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.