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Volumn 10, Issue , 2013, Pages

Sequencing viral genomes from a single isolated plaque

Author keywords

Bacteriophage; Sequencing; Single plaques; SISPA; Virus

Indexed keywords

BACTERIAL DNA;

EID: 84878478310     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-181     Document Type: Article
Times cited : (17)

References (26)
  • 2
    • 70349675587 scopus 로고    scopus 로고
    • Metagenomic analysis of RNA viruses in a fresh water lake
    • 10.1371/journal.pone.0007264 19787045
    • Metagenomic analysis of RNA viruses in a fresh water lake. Djikeng A, Kuzmickas R, Anderson NG, Spiro DJ, PLoS One 2009 4 7264 10.1371/journal.pone. 0007264 19787045
    • (2009) PLoS One , vol.4 , pp. 57264
    • Djikeng, A.1    Kuzmickas, R.2    Anderson, N.G.3    Spiro, D.J.4
  • 3
    • 0141891348 scopus 로고    scopus 로고
    • Metagenomic analyses of an uncultured viral community from human feces
    • DOI 10.1128/JB.185.20.6220-6223.2003
    • Metagenomic analyses of an uncultured viral community from human feces. Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F, J Bacteriol 2003 185 6220 6223 10.1128/JB.185.20.6220-6223.2003 14526037 (Pubitemid 37248478)
    • (2003) Journal of Bacteriology , vol.185 , Issue.20 , pp. 6220-6223
    • Breitbart, M.1    Hewson, I.2    Felts, B.3    Mahaffy, J.M.4    Nulton, J.5    Salamon, P.6    Rohwer, F.7
  • 5
    • 40349087269 scopus 로고    scopus 로고
    • Metagenomic analysis of human diarrhea: Viral detection and discovery
    • DOI 10.1371/journal.ppat.1000011
    • Metagenomic analysis of human diarrhea: viral detection and discovery. Finkbeiner SR, Allred AF, Tarr PI, Klein EJ, Kirkwood CD, Wang D, PLoS Pathog 2008 4 1000011 10.1371/journal.ppat.1000011 18398449 (Pubitemid 351340696)
    • (2008) PLoS Pathogens , vol.4 , Issue.2
    • Finkbeiner, S.R.1    Allred, A.F.2    Tarr, P.I.3    Klein, E.J.4    Kirkwood, C.D.5    Wang, D.6
  • 6
    • 0026067070 scopus 로고
    • Linear amplification DNA sequencing directly from single phage plaques and bacterial colonies
    • 10.1093/nar/19.5.1153 2020551
    • Linear amplification DNA sequencing directly from single phage plaques and bacterial colonies. Krishnan BR, Blakesley RW, Berg DE, Nucleic Acids Res 1991 19 1153 10.1093/nar/19.5.1153 2020551
    • (1991) Nucleic Acids Res , vol.19 , pp. 1153
    • Krishnan, B.R.1    Blakesley, R.W.2    Berg, D.E.3
  • 7
    • 0029105723 scopus 로고
    • DNA sequencing from single phage plaques using solid-phase magnetic capture
    • 134-135 7702838
    • DNA sequencing from single phage plaques using solid-phase magnetic capture. Wang S, Krinks M, Moos M Jr, Biotechniques 1995 18 130 131 134-135 7702838
    • (1995) Biotechniques , vol.18 , pp. 130-131
    • Wang, S.1    Krinks, M.2    Moos Jr., M.3
  • 9
    • 78650037441 scopus 로고    scopus 로고
    • PB2 Residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza a viruses in mice
    • 10.1128/JVI.01694-10 20962098
    • PB2 Residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza a viruses in mice. Zhou B, Li Y, Halpin R, Hine E, Spiro DJ, Wentworth DE, J Virol 2011 85 357 365 10.1128/JVI.01694-10 20962098
    • (2011) J Virol , vol.85 , pp. 357-365
    • Zhou, B.1    Li, Y.2    Halpin, R.3    Hine, E.4    Spiro, D.J.5    Wentworth, D.E.6
  • 11
    • 0037540417 scopus 로고    scopus 로고
    • PEG precipitation for selective removal of small DNA fragments
    • PEG precipitation for selective removal of small DNA fragments. Hartley JL, Bowen H, Focus 1996 18 27
    • (1996) Focus , vol.18 , pp. 27
    • Hartley, J.L.1    Bowen, H.2
  • 13
    • 33745617710 scopus 로고    scopus 로고
    • A fast and symmetric DUST implementation to mask low-complexity DNA sequences
    • DOI 10.1089/cmb.2006.13.1028
    • A fast and symmetric DUST implementation to mask low-complexity DNA sequences. Morgulis A, Gertz EM, Schaffer AA, Agarwala R, J Comput Biol 2006 13 1028 1040 10.1089/cmb.2006.13.1028 16796549 (Pubitemid 43993449)
    • (2006) Journal of Computational Biology , vol.13 , Issue.5 , pp. 1028-1040
    • Morgulis, A.1    Gertz, E.M.2    Schaffer, A.A.3    Agarwala, R.4
  • 14
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Cutadapt removes adapter sequences from high-throughput sequencing reads. Martin M, EMBnetjournal 2011 17 10 12
    • (2011) EMBnetjournal , vol.17 , pp. 10-12
    • Martin, M.1
  • 15
    • 33845613147 scopus 로고    scopus 로고
    • Phage-Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
    • DOI 10.1093/nar/gkl732
    • Phage-Finder: automated identification and classification of prophage regions in complete bacterial genome sequences. Fouts DE, Nucleic Acids Res 2006 34 5839 5851 10.1093/nar/gkl732 17062630 (Pubitemid 44941163)
    • (2006) Nucleic Acids Research , vol.34 , Issue.20 , pp. 5839-5851
    • Fouts, D.E.1
  • 16
    • 77957658175 scopus 로고    scopus 로고
    • Quasispecies theory and the behavior of RNA viruses
    • 10.1371/journal.ppat.1001005 20661479
    • Quasispecies theory and the behavior of RNA viruses. Lauring AS, Andino R, PLoS Pathog 2010 6 1001005 10.1371/journal.ppat.1001005 20661479
    • (2010) PLoS Pathog , vol.6 , pp. 51001005
    • Lauring, A.S.1    Andino, R.2
  • 19
    • 0026290379 scopus 로고
    • Sequence-independent, single-primer amplification (SISPA) of complex DNA populations
    • 10.1016/S0890-8508(05)80020-9 1664049
    • Sequence-independent, single-primer amplification (SISPA) of complex DNA populations. Reyes GR, Kim JP, Mol Cell Probes 1991 5 473 481 10.1016/S0890-8508(05)80020-9 1664049
    • (1991) Mol Cell Probes , vol.5 , pp. 473-481
    • Reyes, G.R.1    Kim, J.P.2
  • 20
    • 83755186199 scopus 로고    scopus 로고
    • A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing
    • 10.1371/journal.pone.0028879 22216131
    • A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, et al. PLoS One 2011 6 28879 10.1371/journal.pone.0028879 22216131
    • (2011) PLoS One , vol.6 , pp. 528879
    • Daly, G.M.1    Bexfield, N.2    Heaney, J.3    Stubbs, S.4    Mayer, A.P.5    Palser, A.6    Kellam, P.7    Drou, N.8    Caccamo, M.9    Tiley, L.10
  • 23
    • 0030008176 scopus 로고    scopus 로고
    • High primer concentration improves PCR amplification from random pools
    • DOI 10.1093/nar/24.5.985
    • High primer concentration improves PCR amplification from random pools. Czerny T, Nucleic Acids Res 1996 24 985 986 10.1093/nar/24.5.985 8600472 (Pubitemid 26076210)
    • (1996) Nucleic Acids Research , vol.24 , Issue.5 , pp. 985-986
    • Czerny, T.1
  • 24
    • 0016796530 scopus 로고
    • Fractionation of chick oviduct chromatin. Nuclease-resistant deoxyribonucleic acid
    • 1240757
    • Fractionation of chick oviduct chromatin. Nuclease-resistant deoxyribonucleic acid. Krall JF, Socher SH, Van NT, O'Malley BW, Biochem J 1975 151 497 503 1240757
    • (1975) Biochem J , vol.151 , pp. 497-503
    • Krall, J.F.1    Socher, S.H.2    Van, N.T.3    O'Malley, B.W.4
  • 25
    • 0018880543 scopus 로고
    • Fractionation of DNA fragments by polyethylene glycol induced precipitation
    • 6246357
    • Fractionation of DNA fragments by polyethylene glycol induced precipitation. Lis JT, Methods Enzymol 1980 65 347 353 6246357
    • (1980) Methods Enzymol , vol.65 , pp. 347-353
    • Lis, J.T.1
  • 26
    • 0026101630 scopus 로고
    • Precipitation of DNA by polyethylene glycol and ethanol
    • 10.1093/nar/19.6.1346 2030954
    • Precipitation of DNA by polyethylene glycol and ethanol. Paithankar KR, Prasad KS, Nucleic Acids Res 1991 19 1346 10.1093/nar/19.6.1346 2030954
    • (1991) Nucleic Acids Res , vol.19 , pp. 1346
    • Paithankar, K.R.1    Prasad, K.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.