Mineral Influence on Microbial Survival During Carbon Sequestration

Geomicrobiology Journal

Volumn 30, Issue 7, 2013, Pages 578-592

  Santillan, Eugenio U ^a   Kirk, Matthew F ^b   Altman, Susan J ^b   Bennett, Philip C ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b SANDIA NATIONAL LABORATORIES   (United States)

Author keywords

biofilm; carbon dioxide; carbon sequestration; Shewanella oneidensis MR 1; subsurface microbiology

Indexed keywords

BIOFILM; CARBON DIOXIDE; CARBON SEQUESTRATION; METHANOGENIC BACTERIUM; MICROBIAL ACTIVITY; MICROBIOLOGY; MINERAL; QUARTZ; SANDSTONE; SURVIVAL; TOXICITY;

ARCHAEA; BACTERIA (MICROORGANISMS); GEOBACILLUS STEAROTHERMOPHILUS; METHANOTHERMOBACTER; NEGIBACTERIA; POSIBACTERIA; SHEWANELLA ONEIDENSIS; SHEWANELLA ONEIDENSIS MR-1;

EID: 84878428082     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490451.2013.767396     Document Type: Article

References (61)

1. Andrews, S C, Robinson, A K and Rodriguez-Quinones, F. 2003. Bacterial iron homeostasis. FEMS Microbiol Rev, 27 (2-3): 215 - 237.
2. Appelo, C and Postma, D. 2005. Geochemistry, groundwater, and pollution, Amsterdam: A.A. Balkema Publishers.
3. 2 storage in geological media: Role, means, status and barriers to deployment. Prog Energ Combust Sci, 34 (2): 254 - 273.
4. Ballestra, P, Dasilva, A A and Cuq, J L. 1996. Inactivation of Escherichia coli by carbon dioxide under pressure. J Food Sci, 61 (4): 829 - 831.
5. Bennett, P, Engel, A and Roberts, J. Counting and imaging bacteria on mineral surfaces. Clay Mineral Society Workshop Proceedings, Chantilly, VA. 2006.
6. Bennett, P C, Rogers, J R and Choi, W J. 2001. Silicates, silicate weathering, and microbial ecology. Geomicrobiol J, 18 (1): 3 - 19.
7. Bethke, C. 1996. Geochemical Reaction Modeling, New York: Oxford University Press.
8. Biffinger, J C, Pietron, J, Bretschger, O, Nadeau, L J, Johnson, G R, Williams, C C, Nealson, K H and Ringeisen, B R. 2008. The influence of acidity on microbial fuel cells containing Shewanella oneidensis. Biosens Bioelectron, 24 (4): 906 - 911.
9. Chong, P LG. 2010. Archaebacterial bipolar tetraether lipids: Physico-chemical and membrane properties. Chem Phys Lipids, 163 (3): 253 - 265.
10. Colwell, F S, Onstott, T C, Delwiche, M E, Chandler, D, Fredrickson, J K, Yao, Q J, McKinley, J P, Boone, D R, Griffiths, R, Phelps, T J, Ringelberg, D, White, D C, LaFreniere, L, Balkwill, D, Lehman, R M, Konisky, J and Long, P E. 1997. Microorganisms from deep, high temperature sandstones: Constraints on microbial colonization. FEMS Microbiol Rev, 20 (3-4): 425 - 435.
11. 2 technology: Microbial and enzyme inactivation, and effects on food quality. J Food Sci, 71 (1): R1 - R11.
12. Dillow, A K, Dehghani, F, Hrkach, J S, Foster, N R and Langer, R. 1999. Bacterial inactivation by using near- and supercritical carbon dioxide. Proc Natl Acad. Sci USA, 96 (18): 10344 - 10348.
13. 2S,...) used for the sequestration of global warming gases. Geochim Cosmochim Acta, 69 (10): A158 - A158.
14. Ehrlich, GG. 1971. Role of biota in underground waste injection and storage. Amer Asso Petrol Geol Bull, 55 (11): 2083-2092
15. Erkmen, O. 2000. Effect of carbon dioxide pressure on Listeria monocytogenes in physiological saline and foods. Food Microbiol, 17 (6): 589 - 596.
16. Farrah, H and Pickering, W F. 1978. Extraction of heavy-metal ions sorbed on clays. Water Air Soil Pollut, 9 (4): 491 - 498.
17. Fubini, B, Mollo, L and Giamello, E. 1995. Free-radical generation at the solid/liquid interface in iron-containing minerals. Free Radic Res, 23 (6): 593 - 614.
18. Gadd, GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology-(UK), 156: 609 - 643.
19. Garciduenas-Pina, R and Cervantes, C. 1996. Microbial interactions with aluminium. Biometals, 9 (3): 311 - 316.
20. Gorbushina, AA. 2007. Life on the rocks. Environ Microbiol, 9 (7): 1613 - 1631.
21. Grim, R. 1968. Clay Mineralogy, New York: McGraw-Hill Book Company.
22. Hong, S I and Pyun, Y R. 1999. Inactivation kinetics of Lactobacillus plantarum by high pressure carbon dioxide. J Food Sci, 64 (4): 728 - 733.
23. Hovorka, S D, Choi, J W, Meckel, T A, Trevino, R H, Zeng, H L, Kordi, M, Wang, F P and Nicot, J P. 2009. " Comparing Carbon Sequestration in an Oil Reservoir to Sequestration in a Brine Formation-Field Study ". In Greenhouse Gas Control Technologies 9, Edited by: Gale, J, Herzog, H and Braitsch, J. p2051 - 2056. Amsterdam: Elsevier Science Bv.
24. Hughes, M and Poole, R. 1989. Metals and Microorganisms, London: Capman and Hall.
25. Kaszuba, P J and Janecky, R D. 2009. Geochemical Impacts of Sequestering Carbon Dioxide in Brine Formations, Washington, DC: ETATS-UNIS: American Geophysical Union.
26. 2 at the ZERT field site, Bozeman, Montana. Environ Earth Sci, 60 (2): 273 - 284.
27. 2 injection: Implications for the storage of greenhouse gases in sedimentary basins. Geology, 34 (7): 577 - 580.
28. Kim, J, Dong, H L, Seabaugh, J, Newell, S W and Eberl, D D. 2004. Role of microbes in the smectite-to-illite reaction. Science, 303 (5659): 830 - 832.
29. Koch, A. 2007. " Growth measurement ". In Methods for general and molecular microbiology, Edited by: Reddy, C BT, Breznak, J, Marzluf, G, Schmidt, M and Snyder, L. p172 - 199. Washington, DC: ASM Press.
30. Kostka, J and Nealson, K H. 1998. " Isolation, cultivation and characterization of Iron- and Manganese-reducing bacteria ". In Techniques in Microbial Ecology, Edited by: Burlage, R AR, Stahl, D, Geesey, G and Sayler, G. p58 - 75. New York: Oxford University Press.
31. 2 vent at Laacher See, Germany. Int J Greenh Gas Contl, 5 (4): 1093 - 1098.
32. Leaphart, A B, Thompson, D K, Huang, K, Alm, E, Wan, X F, Arkin, A, Brown, S D, Wu, L Y, Yan, T F, Liu, X D, Wickham, G S and Zhou, J Z. 2006. Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. J Bacteriol, 188 (4): 1633 - 1642.
33. Lies, D P, Hernandez, M E, Kappler, A, Mielke, R E, Gralnick, J A and Newman, D K. 2005. Shewanella oneidensis MR-1 uses overlapping pathways for iron reduction at a distance and by direct contact under conditions relevant for biofilms. Appl Environ Microbiol, 71 (8): 4414 - 4426.
34. Liss, P S and Slater, P G. 1974. Flux of Gases across the Air-Sea Interface. Nature, 247 (5438): 181 - 184.
35. 2 geosequestration on overlying freshwater aquifers. Environ Sci Technol, 44 (23): 9225 - 9232.
36. Lovley, DR. 1993. Dissimilatory metal reduction. Annu Rev Microbiol, 47: 263 - 290.
37. 2 interaction: implications for geological carbon sequestration. Environ Earth Sci, 62 (1): 101 - 118.
38. Marshall, KC. 1975. Clay mineralogy in relation to survival of soil bacteria. Annu Rev Phytopathol, 13: 357 - 373.
39. 2. J Supercrit Fluids, 47 (2): 318 - 325.
40. 2. Int J Greenh Gas Contr, 3 (1): 90 - 99.
41. Nakamura, K, Enomoto, A, Fukushima, H, Nagai, K and Hakoda, M. 1994. Disruption of microbial-cells by the flash discharge of high-pressure carbon dioxide. Biosci Biotechnol Biochem, 58 (7): 1297 - 1301.
42. Nealson, K H, Belz, A and McKee, B. 2002. Breathing metals as a way of life: geobiology in action. Antonie Van Leeuwenhoek, 81 (1-4): 215 - 222.
43. Onstott, T C, Phelps, T J, Colwell, F S, Ringelberg, D, White, D C, Boone, D R, McKinley, J P, Stevens, T O, Long, P E, Balkwill, D L, Griffin, W T and Kieft, T. 1998. Observations pertaining to the origin and ecology of microorganisms recovered from the deep subsurface of Taylorsville Basin, Virginia. Geomicrobiol J, 15 (4): 353 - 385.
44. 2 and the influence of sensitizing additives. Eur J Sci Res, 41 (4): 569 - 581.
45. 2. Ca. J Microbiol, 52 (12): 1208 - 1217.
46. Pedersen, K. 1993. The deep subterranean biosphere. Earth-Sci Rev, 34 (4): 243 - 260.
47. Perdrial, J N, Warr, L N, Perdrial, N, Lett, M C and Elsass, F. 2009. Interaction between smectite and bacteria: Implications for bentonite as backfill material in the disposal of nuclear waste. Chem Geol, 264 (1-4): 281 - 294.
48. Rittmann, BE. 1993. The significance of biofilms in porous media. Water Resour Res, 29 (7): 2195 - 2202.
49. Roberts, JA. 2004. Inhibition and enhancement of microbial surface colonization: the role of silicate composition. Chem Geol, 212 (3-4): 313 - 327.
50. Sander, R. 1999. Modeling atmospheric chemistry: Interactions between gas-phase species and liquid cloud/aerosol particles. Surv Geophys, 20 (1): 1 - 31.
51. 2. Biotechnol Bioeng, 84 (6): 627 - 638.
52. Suekane, T, Nobuso, T, Hirai, S and Kiyota, M. 2008. Geological storage of carbon dioxide by residual gas and solubility trapping. Int J Greenh Gas Cont, 2 (1): 58 - 64.
53. Trampuz, A, Piper, K E, Jacobson, M J, Hanssen, A D, Unni, K K, Osmon, D R, Mandrekar, J N, Cockerill, F R, Steckelberg, J M, Greenleaf, J F and Patel, R. 2007. Sonication of removed hip and knee prostheses for diagnosis of infection. N Engl J Med, 357 (7): 654 - 663.
54. Walther, J V. 1996. Relation between rates of aluminosilicate mineral dissolution, pH, temperature, and surface charge. Am J Sci, 296 (7): 693 - 728.
55. Wanger, G, Southam, G and Onstott, T C. 2006. Structural and chemical characterization of a natural fracture surface from 2.8 kilometers below land surface: Biofilms in the deep subsurface. Geomicrobiol J, 23 (6): 443 - 452.
56. Watanabe, T, Furukawa, S, Hirata, J, Koyama, T, Ogihara, H and Yamasaki, M. 2003. Inactivation of Geobacillus stearothermophilus spores by high-pressure carbon dioxide treatment. Appl Environ Microbiol, 69 (12): 7124 - 7129.
57. Welker, N E and Campbell, L L. 1963. Induced biosynthesis of alpha-amylase by growing cultures of Bacillus stearothermophilus. J Bacteriol, 86: 1196 - 1201.
58. Whitman, W, Bowen, T and Boone, D. 2006. " The Methanogenic Bacteria ". In The Prokaryotes, Edited by: Dworkin, M, Falkow, S, Rosenberg, E, Schleifer, K-H and Stackebrandt, E. p165 - 207. New York: Springer.
59. 2 sequestration. Environ Sci Technol, 44 (23): 9213 - 9218.
60. Xu, T F, Apps, J A and Pruess, K. 2005. Mineral sequestration of carbon dioxide in a sandstone-shale system. Chem Geol, 217 (3-4): 295 - 318.
61. Zeikus, J G and Wolfe, R S. 1972. Methanothermobactum thermoautotrophicus sp, an anaerobic, autotrophic, extreme thermophile. J Bacteriol, 109 (2): 707 - 715.