Cloning, identification and expression analysis of ACC oxidase gene involved in ethylene production pathway

Molecular Biology Reports

Volumn 40, Issue 2, 2013, Pages 1341-1350

  Jafari, Zohreh ^a   Haddad, Raheem ^a   Hosseini, Ramin ^a   Garoosi, Ghasemali ^a  

^a IMAM KHOMEINI INTERNATIONAL UNIVERSITY   (Iran)

Author keywords

ACC oxidase 1 (ACO1); Active site; Gene expression; Lycopersicon esculentum; Motif

Indexed keywords

1 AMINOCYCLOPROPANECARBOXYLIC ACID; COMPLEMENTARY DNA; ETHYLENE; HISTIDINE DECARBOXYLASE;

ACO1 GENE; ALPHA HELIX; ARTICLE; BINDING SITE; ENZYME SUBSTRATE; FRUIT RIPENING; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; ISOELECTRIC POINT; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PREDICTION; PROTEIN FOLDING; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TOMATO;

AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; BASE SEQUENCE; BIOSYNTHETIC PATHWAYS; CATALYTIC DOMAIN; ETHYLENES; FRUIT; GENE EXPRESSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; LYCOPERSICON ESCULENTUM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID; STRUCTURAL HOMOLOGY, PROTEIN;

LYCOPERSICON ESCULENTUM;

EID: 84878367767     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-2178-7     Document Type: Article

References (59)

1. Bleecker AB, Kende H (2000) Ethylene: a gaseous signal molecule in plants. Annu Rev Cell Dev Biol 16:1-18
2. Adams DO, Yang SF (1979) Ethylene biosynthesis: identification of ACC as an intermediate in the conversion of methionine to ethylene. Proc Natl Acad Sci USA 76:170-174
3. Prescott AG (1993) A dilemma of dioxygenases (or where biochemistry and molecular biology fail to meet). J Exp Bot 44:849-861
4. Ryle MJ, Hausinger RP (2002) Non-heme iron oxygenases. Curr Opin Chem Biol 6(2):193-201
5. Zhang ZH, Ren JS, Clifton LJ, Schofield CJ (2004) Crystal structure and mechanistic implications of 1-aminocyclopropane-1-carboxylic acid oxidase the ethylene-forming enzyme. Chem Biol 11:1383-1394
6. Tang X, Wang H, Brandt AS, Woodson WR (1993) Organization and structure of the 1-aminocyclopropane-1-carboxylate oxidase gene family from Petunia hybrida. Plant Mol Biol 23:1151-1164
7. Chen CM, McManus MT (2006) Expression of 1-aminocyclopropane-1- carboxylate (ACC) oxidase genes during the development of vegetative tissues in white clover (Trifolium repens L.) is regulated by ontological cues. Plant Mol Biol 60:451-467
8. Trainotti L, Pavanello A, Casadoro G (2005) Different ethylene receptors show an increased expression during the ripening of strawberries: does such an increment imply a role for ethylene in the ripening of these non-climacteric fruits? J Exp Bot 56:2037-2046
9. Ruperti B, Bonghi C, Rasori A, Ramina A, Tonutti P (2001) Characterization and expression of two members of the peach 1-aminocyclopropane- 1-carboxylate oxidase gene family. Physiol Plant 111:336-344
10. Lasserre E, Bouquin T, Hernandez JA, Bull J, Pech JC, Balague C (1996) Structure and expression of three genes encoding ACC oxidase homologs from melon (Cucumis melon L.). Mol Gen Genet 251:81-90
11. Fernandez-Otero C, Matilla AJ, Rasori A, Ramina A, Bonghi C (2006) Regulation of ethylene biosynthesis in reproductive organs of damson plum (Prunus domestica L. subsp. Syriaca). Plant Sci 171:74-83
12. Binnie JE, McManus MT (2009) Characterization of the 1-aminocyclopropane- 1-carboxylic acid (ACC) oxidase multigene family of Malus domestica Borkh. Phytochem 70:348-360
13. Clendennen SK, Kipp PB, May GD (1997) The role of ethylene in banana fruit ripening. In: Kanellis AK, Chang C, Kende H, Grierson D (eds) Biology and biotechnology of the plant hormone ethylene. Kluwer, Dordrecht, pp 141-148
14. McGarvey DJ, Christofferson RE (1990) Nucleotide sequence of a ripening related cDNA from avocado fruit. Plant Mol Biol 15:165-167
15. Knoester M, Bol JF, van Loon LC, Linthorst HJ (1995) Virus-induced gene expression for enzymes of ethylene biosynthesis in hypersensitively reacting tobacco. Mol Plant-Microbe Interact 8:177-180
16. Nie X, Singh RP, Tai GC (2002) Molecular characterization and expression analysis of 1-aminocyclopropane-1-carboxylate oxidase homologs from potato under abiotic and biotic stresses. Genome 45:905-913
17. Barry CS, Blume B, Bouzayen M, Cooper W, Hamilton AJ, Grierson D (1996) Differential expression of the 1-aminocyclopropane-1-carboxylate oxidase gene family of tomato. Plant J 9:525-535
18. Alexander L, Lin Z, Chen G, Kim S, Hackett R, Wilson I, Grierson D (2002) Ethylene signalling in ripening tomato fruit. Comp Biochem Physiol A 132:S97
19. Huang LC, Lai UL, Yang SF, Chu CK, Tsai MF, Sun CW (2007) Delayed flower senescence of Petunia hybrida plants transformed with antisense broccoli ACC synthase and ACC oxidase genes. Postharvest Biol and Technol 46:47-53
20. Liu Y, Hoffman NE, Yang SF (1985) Promotion by ethylene of the capability to convert 1-aminocyclopropane-1-carboxylic acid to ethylene in preclimacteric tomato and cantaloupe fruits. Plant Physiol 77:407-411
21. DellaPenna D, Lincoln JE, Fischer RL, Bennett AB (1989) Transcriptional analysis of polygalacturonase and other ripening associated genes in Rutgers, rin, nor, and Nr tomato fruit. Plant Physiol 90:1372-1377
22. Gaffe J, Mishra KK, Tiznado ME, Handa AK (1997) Functional expression of a ubiquitously expressed tomato pectin methylesterase gene in transgenic tobacco plants. Plant Physiol 114:1311-1312
23. Smith DL, Gross KC (2000) A family of at least seven betagalactosidase genes is expressed during tomato fruit development. Plant Physiol 123:1173-1183
24. Cosgrove DJ (2000) Loosening of plant cell walls by expansins. Nature 407:321-326
25. Iki K, Sekigushi K, Kurata K, Tada T, Nakagawa H, Ogura N, Takehana H (1978) Immunological properties of β-fructofuranosidase from ripening tomato fruit. Phytochemistry 17:311-312
26. Jeffery D, Smith C, Goodenough P, Prosser I, Grierson D (1984) Ethylene-independent and ethylene-dependent biochemical changes in ripening tomatoes. Plant Physiol 74:32-38
27. Sitrit Y, Bennett AB (1998) Regulation of tomato fruit polygalacturonase mRNA accumulation by ethylene: a re-examination. Plant Physiol 116:1145-1150
28. Wei j, Ma F, Shi SH, Qi X, Zhu X, Yuan J (2010) Changes and postharvest regulation of activity and gene expression of enzymes related to cell wall degradation in ripening apple fruit. Postharvest Biol and Technol 56:147-154
29. Atkinson RG, Gunaseelan K, Wang MY, Luo L, Wang T, Norling C, Johnston S, Maddumage R, Schröder R, Schaffer R (2011) Dissecting the role of climacteric ethylene in kiwifruit (Actinidia chinensis) ripening using a 1-aminocyclopropane-1-carboxylic acid oxidase knockdown line. J Exp Bot 62(11):3821-3835
30. Stepanova A, Alonso J (2005) Ethylene signaling and response pathway: a unique signaling cascade with a multitude of inputs and outputs. Physiol Plant 123:195-206
31. Reid KE, Olsson N, Schlosser J, Peng F, Lund ST (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 6:27-37
32. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
33. Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A (2005) In: Walker JM (ed) Protein identification and analysis tools on the ExPASy server-the proteomics protocols handbook. Humana Press, Totowa
34. Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N (2010) ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucl Aci Res 38:529-533
35. Geourjon C, Deleage G (1995) SOPMA: significant improvement in protein secondary structure prediction by consensus prediction from multiple alignments. CABiOS 11:681-684
36. Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinf. 9:40. doi: 10.1186/1471-2105-9-40
37. Altschul SF, Gish W, Miller W, Meyers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
38. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 11:4673-4680
39. Kadyrzhanova DK, McCully TJ, Jaworski SA, Ververidis P, Vlachonasios KE, Murakami KG, Dilley DR (1997) Structure function analysis of ACC oxidase by site-directed mutagenesis. In: Kanellis AK, Chang C, Kende H, Grierson D (eds) Biology and biotechnology of the plant hormone ethylene. Kluwer, The Netherlands, pp 5-13
40. McGarvey DJ, Christoffersen RE (1992) Characterization and kinetic parameters of ethylene-forming enzyme from avocado fruit. J Biol Chem 267:5964-5967
41. Seo YS, Yoo A, Jung J, Sung SK, Yang DR, Kim WT, Lee W (2004) The active site and substrate-binding mode of 1-aminocyclopropane-1-carboxylate oxidase determined by site-directed mutagenesis and comparative modelling studies. Biochem J 380:339-346
42. Solomon EI, Brunold TC, Davis MI, Kemsley JN, Lee SK, Lehnert N, Neese F, Skulan AJ, Yang YS, Zhou J (2000) Geometric and electronic structure/function correlations in non-heme iron enzymes. Chem Rev 100:273-278
43. Elkins JM, Ryle MJ, Clifton IJ, Dunning Hotopp JC, Lloyd JS, Burzlaff NI, Baldwin JE, Hausinger RP, Roach PR (2002) X-ray crystal structure of Escherichia coli taurine/-ketoglutarate dioxygenase complexed to ferrous iron and substrates. Biochemistry 41:5185-5192
44. Roach PL, Clifton IJ, Fulop V, Harlos K, Barton GJ, Hajdu J, Andersson I, Schofield CJ, Baldwin JE (1995) Crystal structure of isopenicillin N synthase is the first from a new structural family of enzymes. Nature 375:700-704
45. Zhang ZH, Ren JS, Stammers DK, Baldwin JE, Harlos Schofield CJ (2000) Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase. Nat Struct Biol 7:127-133
46. Wilmouth RC, Turnbull JJ, Welford RWD, Clifton IJ, Prescott AG, Schofield CJ (2002) Structure and mechanism of anthocyanidin synthase from Arabidopsis thaliana. Structure 10:93-103
47. Lay VJ, Prescott AG, Thomas PG, John P (1996) Heterologous expression and site-directed mutagenesis of the 1-aminocyclopropane-1-carboxylate oxidase from kiwi fruit. Eur J Biochem 242:228-234
48. Anjanasree KN, Bansal KC (2005) Differential expression of tomato ACC oxidase gene family in relation to fruit ripening. Curr Sci 89:1394-1398
49. Lelievre JM, Tichit L, Fillion L, Larrigaudiere C, Vendrell M, Pech JC (1995) Cold-induced accumulation of 1-aminocyclopropane-1-carboxylate oxidase protein in Granny Smith apples. Postharv Biol Technol 5:11-17
50. Barry CS, Llop-Tous MI, Grierson D (2000) The regulation of 1-aminocyclopropane-1-carboxylic acid synthase gene expression during the transition from system-1 to system-2 ethylene synthesis in tomato. Plant Physiol 123:979-986
51. Van-der-Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14:1441-1456
52. Calvo G (2004) Efecto del 1-metilciclopropeno (1-MCP) en peras cv Williams cosechadas en dos estados de madurez. Rev Invest Agropecu 33:3-26
53. Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, Kim WT (2000) Hormonal cross-talk between auxin and ethylene differentially regulates the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.). Plant Cell Physiol 41:354-362
54. English PJ, Lycett GW, Roberts JA, Jackson MB (1995) Increased 1-aminocyclopropane-1-carboxylic acid oxidase activity in shoots of flooded tomato plants raises ethylene production to physiologically active levels. Plant Physiol 109:1435-1440
55. Kim JH (2006) Ethylene-regulated expression of ACC oxidase and ACC synthase genes in mung bean hypocotyls. J Plant Biol 49:291-297
56. Llop-Tous I, Barry CS, Grierson D (2000) Regulation of ethylene biosynthesis in response to pollination in tomato flowers. Plant Physiol 123:971-978
57. Owino WO, Manabe Y, Mathooko FM, Kubo Y, Inaba A (2006) Regulatory mechanisms of ethylene biosynthesis in response to various stimuli during maturation and ripening in fig fruit (Ficus carica L.). Plant Physiol Biochem 44:335-342
58. Tassoni A, Watkins CB, Davies PJ (2006) Inhibition of the ethylene response by 1-MCP in tomato suggests that polyamines are not involved in delaying ripening, but may moderate the rate of ripening or over-ripening. J Exp Bot 57:3313-3325
59. Woltering EJ, Balk PA, Nijenhuis-deVries MA, Faivre M, Ruys G, Somhorst D, Philosoph-Hadas S, Friedman H (2005) An auxinresponsive 1-aminocyclopropane- 1-carboxylate synthase is responsible for differential ethylene production in gravistimulated Antirrhinum majus L. flower stems. Planta 220:403-413