Differential transcriptome profiles of heads from foragers: Comparison between Apis mellifera ligustica and Apis cerana cerana

Apidologie

Volumn 43, Issue 5, 2012, Pages 487-500

  Li, Zhiguo ^a   Liu, Fang ^a   Li, Wenfeng ^a   Zhang, Shaowu ^a,b   Niu, Dong ^a   Xu, Haisheng ^a   Hong, Qihua ^a   Chen, Shenglu ^a   Su, Songkun ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

Apis cerana cerana; Apis mellifera ligustica; differential gene expression; foraging behavior; Illumina Solexa sequencing

Indexed keywords

COMPARATIVE STUDY; FORAGING BEHAVIOR; GENE EXPRESSION; HONEYBEE; METABOLISM; MOLECULAR ANALYSIS;

APIS; APIS CERANA CERANA; APIS MELLIFERA; APIS MELLIFERA LIGUSTICA;

EID: 84878312326     PISSN: 00448435     EISSN: 12979678     Source Type: Journal    
DOI: 10.1007/s13592-012-0119-z     Document Type: Article

References (47)

1. 't Hoen, P.A.C.; Ariyurek, Y.; Thygesen, H.H.; Vreugdenhil, E.; Vossen, R.H.A.M.; de Menezes, R.X.; Boer, J.M.; van Ommen, G.J.B.; den Dunnen, J.T. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. 36, e141
2. Albert, S.; Klaudiny, J. (2004) The MRJP/YELLOW protein family of Apis mellifera: identification of new members in the EST library. J. Insect Physiol. 50, 151-159
3. Audic, S.; Claverie, J.M. (1997) The significance of digital gene expression profiles. Genome Res. 7, 986-995
4. Beiter, T.; Reich, E.; Williams, R.W.; Simon, P. (2009) Antisense transcription: a critical look in both directions. Cell. Mol. Life Sci. 66, 94-112
5. Benjamini, Y.; Yekutieli, D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188
6. Ben-Shahar, Y.; Robichon, A.; Pak, W.L.; Sokolowski, M.B.; Robinson, G.E. (2002) Influence of gene action across different time scales on behavior. Science 296, 741-744
7. Ben-Shahar, Y.; Leung, H.; Pak, W.L.; Sokolowski, M.B.; Robinson, G.E. (2003) cGMP-dependent changes in phototaxis: a possible role for the foraging gene in honeybee division of labor. J. Exp. Biol. 206, 2507-2515
8. Carninci, P.; Kasukawa, T.; Katayama, S.; Gough, J.; Frith, M.C.; et al. (2005) The transcriptional landscape of the mammalian genome. Science 309, 1559-1563
9. Chen, S.L. (2001) The Apiculture Science in China. Agricultural Publishing House of China, Beijing
10. Cloonan, N.; Grimmond, S.M. (2008) Transcriptome content and dynamics at single-nucleotide resolution. Genome Biol. 9, 234
11. Drapeau, M.D.; Albert, S.; Kucharski, R.; Prusko, C.; Maleszka, R. (2006) Evolution of the Yellow/Major Royal Jelly Protein family and the emergence of social behavior in honeybees. Genome Res. 16, 1385-1394
12. Fries, I.; Wei, H.Z.; Shi, W.; Chen, S.J. (1996) Grooming behavior and damaged mites (Varroa jacobsoni) in Apis cerana cerana and Apis mellifera ligustica. Apidologie 27, 3-11
13. Garcia, L.; Garcia, C.H.S.; Calábria, L.K.; Cruz, G.C.N.; Puentes, A.S.; Báo, S.N.; Fontes, W.; Ricart, C.A.O.; Espindola, F.S.; Sousa, M.V. (2009) Proteomic analysis of honeybee brain upon ontogenetic and behavioral development. J. Proteome Res. 8, 1464-1473
14. Hall, N. (2007) Advanced sequencing technologies and their wider impact in microbiology. J. Exp. Biol. 210, 1518-1525
15. Hegedùs, Z.; Zakrzewska, A.; Ágoston, V.C.; Ordas, A.; Racz, P.; Mink, M.; Spaink, H.P.; Meijer, A.H. (2009) Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol. Immunol. 46, 2918-2930
16. Kanehisa, M.; Goto, S.; Hattori, M.; Aoki-Kinoshita, K.F.; Itoh, M.; Kawashima, S.; Katayama, T.; Araki, M.; Hirakawa, M. (2006) From genomics to chemical genomics: new developments in KEGG. Nucl. Acids. Res. 34, D354-D357
17. Katayama, S.; Tomaru, Y.; Kasukawa, T.; Waki, K.; Nakanishi, M.; Nakamura, M.; et al. (2005) Antisense transcription in the mammalian transcription. Science 309, 1564-1566
18. Klaudiny, J.; Albert, S.; Bachanová, K.; Kopernický, J.; Šimúth, J. (2005) Two structurally different defensin genes, one of them encoding a novel defensin isoform, are expressed in honeybee Apis mellifera, Isect Biochem. Mol. Biol. 35, 11-22
19. Kucharski, R.; Maleszka, R. (2002) Evaluation of differential gene expression during behavioral development in the honeybee using microarrays and northern blots. Genome Biol. 3, research0007.1-research0007.9
20. Kucharski, R.; Maleska, R.; Hayward, D.C.; Ball, E.E. (1998) A royal jelly protein is expressed in a subset of Kenyon cells in the mushroom bodies of the honeybee brain. Naturwissenschaften 85, 343-346
21. Li, R.; Li, Y.; Kristiansen, K.; Wang, J. (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713-714
22. Liu, F.; Li, W.F.; Li, Z.G.; Zhang, S.W.; Chen, S.L.; Su, S.K. (2011) High-abundance mRNAs in Apis mellifera: comparison between nurses and foragers. J. Insect Physiol. 57, 274-279
23. Mardis, E.R. (2008) The impact of next-generation sequence technology on genetics. Trends Genet. 24, 133-141
24. Morozova, O.; Marra, M.A. (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics 92, 255-264
25. Morrissy, A.S.; Morin, R.D.; Delaney, A. (2009) Next-generation tag sequencing for cancer gene expression profiling. Genome Res. 19, 1825-1835
26. Nelson, C.M.; Ihle, K.E.; Fondrk, M.K.; Page, R.E.; Amdam, G.V. (2007) The gene vitellogenin has multiple coordinating effects on social organization. PLoS Biol. 5, e62
27. Neumann, P.; Carreck, N.L. (2010) Honey bee colony losses. J. Apic. Res. 49, 1-6
28. Patel, A.; Fondrk, M.K.; Kaftanoglu, O.; Emore, C.; Hunt, G.; Frederick, K.; Amdam, G.V. (2007) The making of a queen: TOR pathway is a key player in diphenic caste development. PLoS One 6, e509
29. Peixoto, L.G.; Calábria, L.K.; Garcia, L.; Capparelli, F.E.; Goulart, L.R.; Sousa, M.V.; Espindola, F.S. (2009) Identification of major royal jelly proteins in the brain of the honeybee Apis mellifera. J. Insect Physiol. 55, 671-677
30. Robinson, G.E. (1992) Regulation of division of labor in insect societies. Annu. Rev. Entomol. 37, 637-665
31. Robinson, G.E.; Fahrbach, S.E.; Winston, M.L. (1997) Insect societies and the molecular biology of social behavior. Bioessays 19, 1099-1108
32. Rubin, E.B.; Shemesh, Y.; Cohen, M.; Elgavish, S.; Robertson, H.M.; Bloch, G. (2006) Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honeybee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock. Genome Res. 16, 1352-1365
33. Schippers, M.P.; Dukas, R.; Smith, R.W.; Wang, W.; Smolen, K.; McClelland, G.B. (2006) Lifetime performance in foraging honeybees: behaviour and physiology. J. Exp. Biol. 209, 3828-3836
34. Seeley, T.D. (1995) The Wisdom of the Hive: The Social Physiology of Honey Bee Colonies. Harvard University Press, Cambridge
35. Stanfel, M.N.; Shamieh, L.S.; Kaeberlein, M.; Kennedy, B. (2009) The TOR pathway comes of age. BBA - General Subjects 1790, 1067-1074
36. Su, S.K.; Albert, S.; Chen, S.L.; Zhong, B.X. (2005) Molecular cloning and analysis of four cDNAs from the heads of Apis cerana cerana nurse honeybees coding for major royal jelly proteins. Apidologie 36, 389-401
37. Tan, K.; Radloff, S.E.; Li, J.J.; Hepburn, H.R.; Yang, M.X.; Zhang, L.J.; Neumann, P. (2007) Bee-hawking by the wasp, Vespa velutina, on the honeybees Apis cerana and A. mellifera. Naturwissenschaften 94, 469-472
38. Toma, D.P.; Bloch, G.; Moore, D.; Robinson, G.E. (2000) Changes in period mRNA levels in the brain and division of labor in honey bee colonies. PNAS 97, 6914-6919
39. Velarde, R.A.; Sauer, C.D.; Walden, K.K.; Fahrbach, S.E.; Robertson, H.M. (2005) Pteropsin: a vertebrate-like non-visual opsin expressed in the honeybee brain. Insect Biochem. Mol. Biol. 35, 1367-1377
40. von Frisch, K. (1967) The Dance Language and Orientation of Bees. Harvard University Press, Cambridge
41. Wang, Z.; Gerstein, M.; Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63
42. Weinstock, G.M.; Robinson, G.E.; Gibbs, R.A.; Worley, K.C.; Evans, J.D.; Maleszka, R.; Robertson, H.M.; Weaver, D.B.; Beye, M.; Bork, P.; et al. (2006) Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443, 931-949
43. Wilhelm, B.T.; Landry, J.R. (2009) RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Methods 48, 249-257
44. Winston, M.L. (1987) The Biology of the Honey Bee. Harvard University Press, Cambridge
45. Wu, T.; Qin, Z.W.; Zhou, X.Y.; Feng, Z.; Du, Y.L. (2010) Transcriptome profile analysis of floral sex determination in cucumber. J. Plant Physiol. 167, 905-913
46. Xu, P.; Atkinson, R.; Jones, D.N.; Smith, D.P. (2005) Drosophila OBP LUSH is required for activity of pheromone-sensitive neurons. Neuron 45, 193-200
47. Yelin, R.; Dahary, D.; Sorek, R.; Levanon, E.Y.; Goldstein, O.; Shoshan, A.; Diber, A.; Biton, S.; Tamir, Y.; Khosravi, R.; Nemzer, S.; Pinner, E.; Walach, S.; Bernstein, J.; Savitsky, K.; Rotman, G. (2003) Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol. 21, 379-386