메뉴 건너뛰기




Volumn 405, Issue 15, 2013, Pages 5159-5169

Interlaboratory comparison for quantitative primary metabolite profiling in Pichia pastoris Metabolomics and Metabolite Profiling

Author keywords

Interlaboratory comparison; LC MS MS; Metabolomics; Pichia pastoris

Indexed keywords

HYDROPHILIC INTERACTION CHROMATOGRAPHY; INTERLABORATORY COMPARISON; INTRACELLULAR CONCENTRATION; LABORATORY INTER-COMPARISON; LC-MS/MS; METABOLOMICS; PICHIA PASTORIS; UNCERTAINTY CONTRIBUTIONS;

EID: 84878292928     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-013-6964-4     Document Type: Article
Times cited : (22)

References (31)
  • 1
    • 0036298294 scopus 로고    scopus 로고
    • Metabolomics: Quantification of intracellular metabolite dynamics
    • 10.1016/S1389-0344(02)00003-5 1:CAS:528:DC%2BD38XmsFOnt7w%3D
    • Buchholz A, Hurlebaus J, Wandrey C, Takors R (2002) Metabolomics: quantification of intracellular metabolite dynamics. Biomol Eng 19:5-15
    • (2002) Biomol Eng , vol.19 , pp. 5-15
    • Buchholz, A.1    Hurlebaus, J.2    Wandrey, C.3    Takors, R.4
  • 2
    • 83055186403 scopus 로고    scopus 로고
    • Liquid chromatography-mass spectrometry based global metabolite profiling: A review
    • 10.1016/j.aca.2011.09.042 1:CAS:528:DC%2BC3MXhs1SqsLzO
    • Theodoridis G, Gika H, Want E, Wilson I (2012) Liquid chromatography-mass spectrometry based global metabolite profiling: a review. Anal Chem Acta 711:7-16
    • (2012) Anal Chem Acta , vol.711 , pp. 7-16
    • Theodoridis, G.1    Gika, H.2    Want, E.3    Wilson, I.4
  • 4
    • 0037093109 scopus 로고    scopus 로고
    • Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry
    • 10.1021/ac020064n 1:CAS:528:DC%2BD38XivVOitbY%3D
    • Soga T, Ueno Y, Naraoka H, Ohashi Y, Tomita M, Nishioka T (2002) Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry. Anal Chem 74:2233-2239
    • (2002) Anal Chem , vol.74 , pp. 2233-2239
    • Soga, T.1    Ueno, Y.2    Naraoka, H.3    Ohashi, Y.4    Tomita, M.5    Nishioka, T.6
  • 5
    • 78649318161 scopus 로고    scopus 로고
    • Capillary electrophoresis-electrospray ionization-mass spectrometry using fused-silica capillaries to profile anionic metabolites
    • 10.1007/s11306-010-0223-x 1:CAS:528:DC%2BC3cXhtlKjtLfF
    • Sato S, Yanagisawa S (2010) Capillary electrophoresis-electrospray ionization-mass spectrometry using fused-silica capillaries to profile anionic metabolites. Metabolomics 6:529-540
    • (2010) Metabolomics , vol.6 , pp. 529-540
    • Sato, S.1    Yanagisawa, S.2
  • 6
    • 43249129904 scopus 로고    scopus 로고
    • Hydrophilic interaction chromatography/electrospray mass spectrometry analysis of carbohydrate-related metabolites from Arabidopsis thaliana leaf tissue
    • 10.1002/rcm.3519 1:CAS:528:DC%2BD1cXmtFSrtrY%3D
    • Antonio C, Larson T, Gilday A, Graham I, Bergstrom E, Thomas-Oates J (2008) Hydrophilic interaction chromatography/electrospray mass spectrometry analysis of carbohydrate-related metabolites from Arabidopsis thaliana leaf tissue. Rapid Commun Mass Spectrom 22:1399-1407
    • (2008) Rapid Commun Mass Spectrom , vol.22 , pp. 1399-1407
    • Antonio, C.1    Larson, T.2    Gilday, A.3    Graham, I.4    Bergstrom, E.5    Thomas-Oates, J.6
  • 7
    • 77951072181 scopus 로고    scopus 로고
    • Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer
    • 10.1021/ac902837x 1:CAS:528:DC%2BC3cXjvFygsrg%3D
    • Lu W, Clasquin M, Melamud E, Amador-Noguez D, Caudy A, Rabinowitz J (2010) Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer. Anal Chem 82:3212-3221
    • (2010) Anal Chem , vol.82 , pp. 3212-3221
    • Lu, W.1    Clasquin, M.2    Melamud, E.3    Amador-Noguez, D.4    Caudy, A.5    Rabinowitz, J.6
  • 8
    • 33947503169 scopus 로고    scopus 로고
    • Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry
    • 10.1016/j.chroma.2007.02.034 1:CAS:528:DC%2BD2sXjslGrt7o%3D
    • Luo B, Groenke K, Takors R, Wandrey C, Oldiges M (2007) Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry. J Chromatogr A 1147:153-164
    • (2007) J Chromatogr A , vol.1147 , pp. 153-164
    • Luo, B.1    Groenke, K.2    Takors, R.3    Wandrey, C.4    Oldiges, M.5
  • 9
    • 82955233885 scopus 로고    scopus 로고
    • Simplified absolute metabolite quantification by gas chromatography- isotope dilution mass spectrometry on the basis of commercially available source material
    • 10.1016/j.jchromb.2011.10.036 1:CAS:528:DC%2BC3MXhsFOgtL3E
    • Vielhauer O, Zakhartsev M, Horn T, Takors R, Reuss M (2011) Simplified absolute metabolite quantification by gas chromatography-isotope dilution mass spectrometry on the basis of commercially available source material. J Chromatogr B 879:3859-3870
    • (2011) J Chromatogr B , vol.879 , pp. 3859-3870
    • Vielhauer, O.1    Zakhartsev, M.2    Horn, T.3    Takors, R.4    Reuss, M.5
  • 10
    • 48749102719 scopus 로고    scopus 로고
    • Standardizing GC-MS metabolomics
    • 10.1016/j.jchromb.2008.04.049 1:CAS:528:DC%2BD1cXps12itr4%3D
    • Kanani H, Chrysanthopoulos PK, Klapa MI (2008) Standardizing GC-MS metabolomics. J Chromatogr B 871:191-201
    • (2008) J Chromatogr B , vol.871 , pp. 191-201
    • Kanani, H.1    Chrysanthopoulos, P.K.2    Klapa, M.I.3
  • 11
    • 69749110125 scopus 로고    scopus 로고
    • Quantitative evaluation of intercellular metabolite extraction techniques for yeast metabolomics
    • 10.1021/ac900999t 1:CAS:528:DC%2BD1MXptlelt7Y%3D
    • Canelas AB, Pierick A, Ras C, Seifar CR, van Dam J, van Gulik W, Heijnen J (2009) Quantitative evaluation of intercellular metabolite extraction techniques for yeast metabolomics. Anal Chem 81:7379-7389
    • (2009) Anal Chem , vol.81 , pp. 7379-7389
    • Canelas, A.B.1    Pierick, A.2    Ras, C.3    Seifar, C.R.4    Van Dam, J.5    Van Gulik, W.6    Heijnen, J.7
  • 13
    • 51649104270 scopus 로고    scopus 로고
    • Leakage-free rapid quenching technique for yeast metabolomics
    • 10.1007/s11306-008-0116-4 1:CAS:528:DC%2BD1cXhtVyis7bO
    • Canelas AB, Ras C, Pierick A, Dam JC, Heijnen JJ, Gulik WM (2008) Leakage-free rapid quenching technique for yeast metabolomics. Metabolomics 4:226-239
    • (2008) Metabolomics , vol.4 , pp. 226-239
    • Canelas, A.B.1    Ras, C.2    Pierick, A.3    Dam, J.C.4    Heijnen, J.J.5    Gulik, W.M.6
  • 15
    • 69749094421 scopus 로고    scopus 로고
    • A comprehensive method for the quantification of the non-oxidative pentose phosphate pathway intermediates in Saccharomyces cerevisiae by GC-IDMS
    • 10.1016/j.jchromb.2009.07.019 1:CAS:528:DC%2BD1MXhtFams7bM
    • Cipollina C, ten Pierick A, Canelas AB, Seifar RM, van Maris AJ, van Dam JC, Heijnen JJ (2009) A comprehensive method for the quantification of the non-oxidative pentose phosphate pathway intermediates in Saccharomyces cerevisiae by GC-IDMS. J Chromatogr B 877:3231-3236
    • (2009) J Chromatogr B , vol.877 , pp. 3231-3236
    • Cipollina, C.1    Ten Pierick, A.2    Canelas, A.B.3    Seifar, R.M.4    Van Maris, A.J.5    Van Dam, J.C.6    Heijnen, J.J.7
  • 17
    • 47749100446 scopus 로고    scopus 로고
    • Liquid chromatographic-mass spectrometric analysis of glucuronide-conjugated anabolic steroid metabolites: Method validation and interlaboratory comparison
    • 10.1002/jms.1434 1:CAS:528:DC%2BD1cXptVehu7o%3D
    • Hintikka L, Kuuranne T, Leinonen A, Thevis M, Schänzer W, Halket J, Cowan D, Grosse J, Hemmersbach P, Nielen M, Kostiainen R (2008) Liquid chromatographic-mass spectrometric analysis of glucuronide-conjugated anabolic steroid metabolites: method validation and interlaboratory comparison. J Mass Spectrom 43:965-973
    • (2008) J Mass Spectrom , vol.43 , pp. 965-973
    • Hintikka, L.1    Kuuranne, T.2    Leinonen, A.3    Thevis, M.4    Schänzer, W.5    Halket, J.6    Cowan, D.7    Grosse, J.8    Hemmersbach, P.9    Nielen, M.10    Kostiainen, R.11
  • 20
    • 0040080155 scopus 로고    scopus 로고
    • Interlaboratory study of a multiresidue gas chromatographic method for determination of organochlorine and pyrethroid pesticides and polychlorobiphenyls in milk, fish, eggs, and beef fat
    • 1:CAS:528:DC%2BD38Xptlags7Y%3D
    • Bordet F, Inthavong D, Fremy JM (2002) Interlaboratory study of a multiresidue gas chromatographic method for determination of organochlorine and pyrethroid pesticides and polychlorobiphenyls in milk, fish, eggs, and beef fat. J AOAC Int 85:1398-1409
    • (2002) J AOAC Int , vol.85 , pp. 1398-1409
    • Bordet, F.1    Inthavong, D.2    Fremy, J.M.3
  • 21
    • 74449088783 scopus 로고    scopus 로고
    • Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics
    • 10.1007/s11306-009-0169-z 1:CAS:528:DC%2BD1MXhsFGrurfO
    • Allwood JW, Erban A, Koning S, Dunn WB, Luedemann A, Lommen A, Kay L, Löscher R, Kopka J, Goodacre R (2009) Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5:479-496
    • (2009) Metabolomics , vol.5 , pp. 479-496
    • Allwood, J.W.1    Erban, A.2    Koning, S.3    Dunn, W.B.4    Luedemann, A.5    Lommen, A.6    Kay, L.7    Löscher, R.8    Kopka, J.9    Goodacre, R.10
  • 22
    • 34248205792 scopus 로고    scopus 로고
    • Amino acid profiling in plant cell cultures: An inter-laboratory comparison of CE-MS and GC-MS
    • 10.1002/elps.200600609 1:CAS:528:DC%2BD2sXlslSktb4%3D
    • Williams BJ, Cameron CJ, Workman R, Broeckling CD, Sumner LW, Smith JT (2007) Amino acid profiling in plant cell cultures: an inter-laboratory comparison of CE-MS and GC-MS. Electrophoresis 28:1371-1379
    • (2007) Electrophoresis , vol.28 , pp. 1371-1379
    • Williams, B.J.1    Cameron, C.J.2    Workman, R.3    Broeckling, C.D.4    Sumner, L.W.5    Smith, J.T.6
  • 23
    • 0003484310 scopus 로고    scopus 로고
    • U.S. Department of Health and Human Services, Food and Drug Administration Accessed 10 August 2012
    • U.S. Department of Health and Human Services, Food and Drug Administration (2001) Guidance for industry: bioanalytical method validation. http://www.fda.gov/downloads/Drugs/./Guidances/ucm070107.pdf. Accessed 10 August 2012
    • (2001) Guidance for Industry: Bioanalytical Method Validation
  • 24
    • 84866338622 scopus 로고    scopus 로고
    • Quantitative profiling of polar primary metabolites using hydrophilic interaction ultrahigh performance liquid chromatography-tandem mass spectrometry
    • Gika HG, Theodoridis GA, Vrhovsek U, Mattivi F (2012) Quantitative profiling of polar primary metabolites using hydrophilic interaction ultrahigh performance liquid chromatography-tandem mass spectrometry. J Chromatogr A 1259:121-127
    • (2012) J Chromatogr A , vol.1259 , pp. 121-127
    • Gika, H.G.1    Theodoridis, G.A.2    Vrhovsek, U.3    Mattivi, F.4
  • 26
    • 37049080642 scopus 로고
    • Calculating standard deviations and confidence intervals with a universally applicable spreadsheet technique
    • 10.1039/an9941902161 1:CAS:528:DyaK2MXhsVSgsLg%3D
    • Kragten J (1994) Calculating standard deviations and confidence intervals with a universally applicable spreadsheet technique. Analyst 119:2161-2165
    • (1994) Analyst , vol.119 , pp. 2161-2165
    • Kragten, J.1
  • 27
    • 77954143145 scopus 로고    scopus 로고
    • Potential loss of methionine following extended storage of newborn screening sample prepared for tandem mass spectrometry analysis
    • 10.1016/j.cca.2010.05.011
    • Chace DH, Luo Z, Jesus V, Haynes CA, Hannon WH (2010) Potential loss of methionine following extended storage of newborn screening sample prepared for tandem mass spectrometry analysis. Clin Chim Acta 441:1284-1286
    • (2010) Clin Chim Acta , vol.441 , pp. 1284-1286
    • Chace, D.H.1    Luo, Z.2    Jesus, V.3    Haynes, C.A.4    Hannon, W.H.5
  • 28
    • 84856383772 scopus 로고    scopus 로고
    • Kinetic modeling of storage effects on biomarkers related to B vitamin status and one-carbon metabolism
    • 10.1373/clinchem.2011.174490 1:CAS:528:DC%2BC38XitlWhuro%3D
    • Hustad S, Eussen S, Midttun O, Ulvik A, Kant PM, Morkrid L, Gislefoss R, Ueland PM (2012) Kinetic modeling of storage effects on biomarkers related to B vitamin status and one-carbon metabolism. Clin Chem 58:402-410
    • (2012) Clin Chem , vol.58 , pp. 402-410
    • Hustad, S.1    Eussen, S.2    Midttun, O.3    Ulvik, A.4    Kant, P.M.5    Morkrid, L.6    Gislefoss, R.7    Ueland, P.M.8
  • 29
    • 48749115798 scopus 로고    scopus 로고
    • Phenotype differentiation of three E. coli strains by GC-FID and GC-MS based metabolomics
    • 10.1016/j.jchromb.2008.06.031 1:CAS:528:DC%2BD1cXps12itr0%3D
    • Tian J, Shi C, Gao P, Yuan K, Yang D, Lu X, Xu G (2008) Phenotype differentiation of three E. coli strains by GC-FID and GC-MS based metabolomics. J Chromatogr B 871:220-226
    • (2008) J Chromatogr B , vol.871 , pp. 220-226
    • Tian, J.1    Shi, C.2    Gao, P.3    Yuan, K.4    Yang, D.5    Lu, X.6    Xu, G.7
  • 30
    • 34347371565 scopus 로고    scopus 로고
    • Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry
    • 10.1016/j.jbiotec.2007.04.026 1:CAS:528:DC%2BD2sXnsFKgs7g%3D
    • Plassmeier J, Barsch A, Persicke M, Niehaus K, Kalinowski J (2007) Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry. J Biotechnol 130:354-363
    • (2007) J Biotechnol , vol.130 , pp. 354-363
    • Plassmeier, J.1    Barsch, A.2    Persicke, M.3    Niehaus, K.4    Kalinowski, J.5
  • 31
    • 62249104385 scopus 로고    scopus 로고
    • Liquid chromatography-tandem quadrupole mass spectrometry and comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry measurement of targeted metabolites of Methylobacterium extorquens AM1 grown on two different carbon sources
    • 10.1016/j.chroma.2009.02.030 1:CAS:528:DC%2BD1MXjsFaiurk%3D
    • Yang S, Sadilek M, Synovec RE, Lidstrom ME (2009) Liquid chromatography-tandem quadrupole mass spectrometry and comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry measurement of targeted metabolites of Methylobacterium extorquens AM1 grown on two different carbon sources. J Chromatogr A 1216:3280-3289
    • (2009) J Chromatogr A , vol.1216 , pp. 3280-3289
    • Yang, S.1    Sadilek, M.2    Synovec, R.E.3    Lidstrom, M.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.