The role of auxin in shaping shoot architecture

Journal of Experimental Botany

Volumn 64, Issue 9, 2013, Pages 2593-2608

  Gallavotti, Andrea ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

Auxin; inflorescence development; maize; meristems; plant architecture; rice

Indexed keywords

AUXIN; INDOLEACETIC ACID DERIVATIVE; PLANT GUM;

ARABIDOPSIS; BIOLOGICAL MODEL; BIOSYNTHESIS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; INFLORESCENCE DEVELOPMENT; MAIZE; MERISTEM; MERISTEMS; METABOLISM; PLANT; PLANT ARCHITECTURE; REVIEW; RICE; RICE.; SIGNAL TRANSDUCTION;

AUXIN; INFLORESCENCE DEVELOPMENT; MAIZE; MERISTEMS; PLANT ARCHITECTURE; RICE.;

ARABIDOPSIS; BIOSYNTHETIC PATHWAYS; INDOLEACETIC ACIDS; MERISTEM; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; ORYZA SATIVA; PLANT GUMS; PLANT SHOOTS; SIGNAL TRANSDUCTION; ZEA MAYS;

ZEA MAYS;

EID: 84878289146     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/ert141     Document Type: Review

References (140)

1. Aguilar-Martinez JA, Poza-Carrion C, Cubas P. 2007. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. The Plant Cell 19, 458-472. (Pubitemid 46941671)
2. Bainbridge K, Guyomarc'h S, Bayer E, Swarup R, Bennett M, Mandel T, Kuhlemeier C. 2008. Auxin influx carriers stabilize phyllotactic patterning. Genes and Development 22, 810-823. (Pubitemid 351439111)
3. Balla J, Kalousek P, Reinohl V, Friml J, Prochazka S. Competitive canalization of PIN-dependent auxin flow from axillary buds controls pea bud outgrowth. The Plant Journal 65, 571-577.
4. Barazesh S, McSteen P. 2008. Barren inflorescence1 functions in organogenesis during vegetative and inflorescence development in maize. Genetics 179, 389-401.
5. Bell EM, Lin WC, Husbands AY, Yu L, Jaganatha V, Jablonska B, Mangeon A, Neff MM, Girke T, Springer PS. 2012. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Proceedings of the National Academy of Sciences, USA 109, 21146-21151.
6. Bennett SRM, Alvarez J, Bossinger G, Smyth DR. Morphogenesis in pinoid mutants of Arabidopsis thaliana. The Plant Journal 8, 505-520.
7. Bilsborough GD, Runions A, Barkoulas M, Jenkins HW, Hasson A, Galinha C, Laufs P, Hay A, Prusinkiewicz P, Tsiantis M. 2011. Model for the regulation of Arabidopsis thaliana leaf margin development. Proceedings of the National Academy of Sciences, USA 108, 3424-3429.
8. Blakeslee JJ, Bandyopadhyay A, Lee OR, et al. 2007. Interactions among PIN-FORMED and P-glycoprotein auxin transporters in Arabidopsis. The Plant Cell 19, 131-147. (Pubitemid 46852707)
9. Bommert P, Nagasawa NS, Jackson D. 2013. Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics 45, 334-337.
10. Borghi L, Bureau M, Simon R. 2007. Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity. The Plant Cell 19, 1795-1808. (Pubitemid 47218841)
11. Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. 2006. ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. The Plant Cell 18, 574-585. (Pubitemid 43956162)
12. Carraro N, Forestan C, Canova S, Traas J, Varotto S. ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize. Plant Physiology 142, 254-264.
13. Chae K, Isaacs CG, Reeves PH, Maloney GS, Muday GK, Nagpal P, Reed JW. 2012. Arabidopsis SMALL AUXIN UP RNA63 promotes hypocotyl and stamen filament elongation. The Plant Journal 71, 684-697.
14. Chapman EJ, Estelle M. 2009. Mechanism of auxin-regulated gene expression in plants. Annual Review of Genetics 43, 265-285.
15. Cheng YF, Dai XH, Zhao YD. 2006. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes and Development 20, 1790-1799.
16. Cheng YF, Dai XH, Zhao YD. 2007. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. The Plant Cell 19, 2430-2439.
17. Cheng Y, Qin G, Dai X, Zhao Y. 2008. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proceedings of the National Academy of Sciences, USA 105, 21017-21022.
18. Choi MS, Koh EB, Woo MK, Piao R, Oh CS, Koh HJ. Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA. Journal of Plant Biology 55, 429-435.
19. Chuck G, Whipple C, Jackson D, Hake S. 2010. The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries. Development 137, 1243-1250.
20. Crawford S, Shinohara N, Sieberer T, Williamson L, George G, Hepworth J, Muller D, Domagalska MA, Leyser O. Strigolactones enhance competition between shoot branches by dampening auxin transport. Development 137, 2905-2913.
21. de Reuille PB, Bohn-Courseau I, Ljung K, Morin H, Carraro N, Godin C, Traas J. 2006. Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proceedings of the National Academy of Sciences, USA 103, 1627-1632. (Pubitemid 43191215)
22. Dharmasiri N, Dharmasiri S, Estelle M. 2005. The F-box protein TIR1 is an auxin receptor. Nature 435, 441-445. (Pubitemid 40734235)
23. Ding XH, Cao YL, Huang LL, Zhao J, Xu CG, Li XH, Wang SP. 2008. Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonateindependent basal immunity in rice. The Plant Cell 20, 228-240. (Pubitemid 352844045)
24. Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. 2004. The role of JAGGED in shaping lateral organs. Development 131, 1101-1110. (Pubitemid 38380463)
25. Doebley J, Stec A, Hubbard L. 1997. The evolution of apical dominance in maize. Nature 386, 485-488. (Pubitemid 27164072)
26. Domagalska MA, Leyser O. 2011. Signal integration in the control of shoot branching. Nature Reviews. Molecular Cell Biology 12, 211-221.
27. Dreher KA, Brown J, Saw RE, Callis J. 2006. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. The Plant Cell 18, 699-714. (Pubitemid 43956172)
28. Finet C, Jaillais Y. 2012. Auxology: when auxin meets plant evodevo. Developmental Biology 369, 19-31.
29. Forestan C, Farinati S, Varotto S. 2012. The maize PIN gene family of auxin transporters. Frontiers in Plant Science 3, 16.
30. Forestan C, Varotto S. 2011. The role of PIN auxin efflux carriers in polar auxin transport and accumulation and their effect on shaping maize development. Molecular Plant 5, 787-798.
31. Franklin KA, Lee SH, Patel D, et al. 2011. PHYTOCHROMEINTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature. Proceedings of the National Academy of Sciences, USA 108, 20231-20235.
32. Friml J, Yang X, Michniewicz M, et al. 2004. A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 306, 862-865. (Pubitemid 39446993)
33. Furutani M, Kajiwara T, Kato T, Treml BS, Stockum C, Torres- Ruiz RA, Tasaka M. 2007. The gene MACCHI-BOU 4/ENHANCER OF PINOID encodes a NPH3-like protein and reveals similarities between organogenesis and phototropism at the molecular level. Development 134, 3849-3859. (Pubitemid 350187344)
34. Furutani M, Sakamoto N, Yoshida S, Kajiwara T, Robert HS, Friml J, Tasaka M. 2011. Polar-localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. Development 138, 2069-2078.
35. Galinat W. 1959. The phytomer in relation to the floral homologies in the American Maydea. Botanical Museum Leaflets, Harvard University 19, 1-32.
36. Gallavotti A, Barazesh S, Malcomber S, Hall D, Jackson D, Schmidt RJ, McSteen P. 2008a. sparse inflorescence1 encodes a monocot-specific YUCCA-like gene required for vegetative and reproductive development in maize. Proceedings of the National Academy of Sciences, USA 105, 15196-15201.
37. Gallavotti A, Long JA, Stanfield S, Yang XA, Jackson D, Vollbrecht E, Schmidt RJ. 2010. The control of axillary meristem fate in the maize ramosa pathway. Development 137, 2849-2856.
38. Gallavotti A, Malcomber S, Gaines C, Stanfield S, Whipple C, Kellogg E, Schmidt RJ. 2011. BARREN STALK FASTIGIATE1 is an AT-hook protein required for the formation of maize ears. The Plant Cell 23, 1756-1771.
39. Gallavotti A, Yang Y, Schmidt RJ, Jackson D. 2008b. The relationship between auxin transport and maize branching. Plant Physiology 147, 1913-1923.
40. Gallavotti A, Zhao Q, Kyozuka J, Meeley RB, Ritter M, Doebley JF, Pe ME, Schmidt RJ. 2004. The role of barren stalk1 in the architecture of maize. Nature 432, 630-635. (Pubitemid 39626270)
41. Galweiler L, Guan CH, Muller A, Wisman E, Mendgen K, Yephremov A, Palme K. 1998. Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282, 2226-2230. (Pubitemid 29004064)
42. Gendron JM, Liu JS, Fan M, Bai MY, Wenkel S, Springer PS, Barton MK, Wang ZY. 2012. Brassinosteroids regulate organ boundary formation in the shoot apical meristem of Arabidopsis. Proceedings of the National Academy of Sciences, USA 109, 21152-21157.
43. Gomez-Roldan V, Fermas S, Brewer PB, et al. 2008. Strigolactone inhibition of shoot branching. Nature 455, 189-194.
44. Gray A. 1879. Structural botany . New York: Macmillan.
45. Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M. 2001. Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins. Nature 414, 271-276. (Pubitemid 33097797)
46. Grossmann K. 2010. Auxin herbicides: current status of mechanism and mode of action. Pest Management Science 66, 113-120.
47. Guan JC, Koch KE, Suzuki M, Wu S, Latshaw S, Petruff T, Goulet C, Klee HJ, McCarty DR. 2012. Diverse roles of strigolactone signaling in maize architecture and the uncoupling of a branching-specific subnetwork. Plant Physiology 160, 1303-1317.
48. Guilfoyle TJ, Hagen G. 2007. Auxin response factors. Current Opinion in Plant Biology 10, 453-460. (Pubitemid 47505406)
49. Hagen G, Guilfoyle TJ. 1985. Rapid induction of selective transcription by auxins. Molecular and Cellular Biology 5, 1197-1203.
50. Hagen G, Kleinschmidt A, Guilfoyle T. 1984. Auxin-regulated gene-expression in intact soybean hypocotyl and excised hypocotyl sections. Planta 162, 147-153.
51. Hardtke CS, Ckurshumova W, Vidaurre DP, Singh SA, Stamatiou G, Tiwari SB, Hagen G, Guilfoyle TJ, Berleth T. 2004. Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4.Development 131, 1089-1100. (Pubitemid 38380462)
52. Heisler MG, Ohno C, Das P, Sieber P, Reddy GV, Long JA, Meyerowitz EM. 2005. Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Current Biology 15, 1899-1911. (Pubitemid 41566136)
53. Hibara K, Karim MR, Takada S, Taoka K, Furutani M, Aida M, Tasaka M. 2006. Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. The Plant Cell 18, 2946-2957. (Pubitemid 46013268)
54. Hornitschek P, Kohnen MV, Lorrain S, et al. 2012. Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. The Plant Journal 71, 699-711.
55. Jiao Y, Wang Y, Xue D, et al. 2010. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nature Genetics 42, 541-544.
56. Jonsson H, Heisler MG, Shapiro BE, Meyerowitz EM, Mjolsness E. 2006. An auxin-driven polarized transport model for phyllotaxis. Proceedings of the National Academy of Sciences, USA 103, 1633-1638. (Pubitemid 43191216)
57. Kant S, Bi YM, Zhu T, Rothstein SJ. 2009. SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice. Plant Physiology 151, 691-701.
58. Kebrom TH, Brutnell TP. 2007. The molecular analysis of the shade avoidance syndrome in the grasses has begun. Journal of Experimental Botany 58, 3079-3089. (Pubitemid 350060435)
59. Keller T, Abbott J, Moritz T, Doerner P. 2006. Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development. The Plant Cell 18, 598-611. (Pubitemid 43956164)
60. Kepinski S, Leyser O. 2005. The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435, 446-451. (Pubitemid 40734236)
61. Krogan NT, Hogan K, Long JA. 2012. APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19. Development 139, 4180-4190.
62. Lee DK, Geisler M, Springer PS. 2009. LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis. Development 136, 2423-2432.
63. Leivar P, Quail PH. 2011. PIFs: pivotal components in a cellular signaling hub. Trends in Plant Science 16, 19-28.
64. Leyser O. 2003. Regulation of shoot branching by auxin. Trends in Plant Science 8, 541-545. (Pubitemid 37481532)
65. Leyser O, Lincoln C, Timpte C, Lammer D, Turner J, Estelle M. 1993. Arabidopsis auxin-resistance gene AXR1 encodes a protein related to ubiquitin-activating enzyme E1. Nature 364, 161-164. (Pubitemid 23238201)
66. Li L, Ljung K, Breton G, et al. 2012. Linking photoreceptor excitation to changes in plant architecture. Genes and Development 26, 785-790.
67. Li PJ, Wang YH, Qian Q, Fu ZM, Wang M, Zeng DL, Li BH, Wang XJ, Li JY. 2007. LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Research 17, 402-410. (Pubitemid 46763091)
68. Lin H, Wang R, Qian Q, et al. 2009. DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. The Plant Cell 21, 1512-1525.
69. Long JA, Ohno C, Smith ZR, Meyerowitz EM. 2006. TOPLESS regulates apical embryonic fate in Arabidopsis. Science 312, 1520-1523. (Pubitemid 43865890)
70. Ludwig-Muller J. 2011. Auxin conjugates: their role for plant development and in the evolution of land plants. Journal of Experimental Botany 62, 1757-1773.
71. Mashiguchi K, Tanaka K, Sakai T, et al. 2011. The main auxin biosynthesis pathway in Arabidopsis. Proceedings of the National Academy of Sciences, USA 108, 18512-18517.
72. Sassi M, Vernoux T. 2013. Auxin and self-organization at the shoot apical meristem. Journal of Experimental Botany 64, 2579-2592.
73. McSteen P, Leyser O. 2005. Shoot branching. Annual Review of Plant Biology 56, 353-374. (Pubitemid 40802414)
74. McSteen P, Malcomber S, Skirpan A, Lunde C, Wu XT, Kellogg E, Hake S. 2007. barren inflorescence2 encodes a co-ortholog of the PINOID serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize. Plant Physiology 144, 1000-1011. (Pubitemid 46944764)
75. Michniewicz M, Zago MK, Abas L, et al. 2007. Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell 130, 1044-1056. (Pubitemid 47410270)
76. Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M. 2010. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nature Genetics 42, 545-549.
77. Mravec J, Kubes M, Bielach A, Gaykova V, Petrasek J, Skupa P, Chand S, Benkova E, Zazimalova E, Friml J. 2008. Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. Development 135, 3345-3354.
78. Multani DS, Briggs SP, Chamberlin MA, Blakeslee JJ, Murphy AS, Johal GS. 2003. Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science 302, 81-84. (Pubitemid 37210690)
79. Nakamura A, Umemura I, Gomi K, Hasegawa Y, Kitano H, Sazuka T, Matsuoka M. 2006. Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein. The Plant Journal 46, 297-306. (Pubitemid 43773568)
80. Nakazawa M, Yabe N, Ichikawa T, Yamamoto YY, Yoshizumi T, Hasunuma K, Matsui M. 2001. DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. The Plant Journal 25, 213-221. (Pubitemid 32122755)
81. Oikawa T, Kyozuka J. 2009. Two-step regulation of LAX PANICLE1 protein accumulation in axillary meristem formation in rice. The Plant Cell 21, 1095-1108.
82. Okada K, Ueda J, Komaki MK, Bell CJ, Shimura Y. Requirement of the auxin polar transport-system in early stages of Arabidopsis floral bud formation. The Plant Cell 3, 677-684.
83. Paponov IA, Teale W, Lang D, Paponov M, Reski R, Rensing SA, Palme K. 2009. The evolution of nuclear auxin signalling. BMC Evolutionary Biology 9, 126.
84. Park JE, Park JY, Kim YS, Staswick PE, Jeon J, Yun J, Kim SY, Kim J, Lee YH, Park CM. 2007. GH3-mediated auxin homeostasis links growth regulation with stress adaptation response in Arabidopsis. Journal of Biological Chemistry 282, 10036-10046. (Pubitemid 47104632)
85. Phillips KA, Skirpan AL, Kaplinsky NJ, McSteen P. Developmental disaster1: a novel mutation causing defects during vegetative and inflorescence development in maize (Zea mays, Poaceae). American Journal of Botany 96, 420-430.
86. Phillips KA, Skirpan AL, Liu X, Christensen A, Slewinski TL, Hudson C, Barazesh S, Cohen JD, Malcomber S, McSteen P. 2011. vanishing tassel2 encodes a grass-specific tryptophan aminotransferase required for vegetative and reproductive development in maize. The Plant Cell 23, 550-566.
87. Ploense SE, Wu MF, Nagpal P, Reed JW. 2009. A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Development 136, 1509-1517.
88. Prusinkiewicz P, Erasmus Y, Lane B, Harder LD, Coen E. Evolution and development of inflorescence architectures. Science 316, 1452-1456.
89. Przemeck GKH, Mattsson J, Hardtke CS, Sung ZR, Berleth T. 1996. Studies on the role of the Arabidopsis gene MONOPTEROS in vascular development and plant cell axialization. Planta 200, 229-237. (Pubitemid 26407061)
90. Rast MI, Simon R. 2012. Arabidopsis JAGGED LATERAL ORGANS acts with ASYMMETRIC LEAVES2 to coordinate KNOX and PIN expression in shoot and root meristems. The Plant Cell 24, 2917-2933.
91. Reed JW. 2001. Roles and activities of Aux/IAA proteins in Arabidopsis. Trends in Plant Science 6, 420-425. (Pubitemid 33145939)
92. Reinhardt D, Pesce ER, Stieger P, Mandel T, Baltensperger K, Bennett M, Traas J, Friml J, Kuhlemeier C. 2003. Regulation of phyllotaxis by polar auxin transport. Nature 426, 255-260. (Pubitemid 37463138)
93. Ritter MK, Padilla CM, Schmidt RJ. 2002. The maize mutant barren stalk1 is defective in axillary meristem development. American Journal of Botany 89, 203-210. (Pubitemid 34191019)
94. Rosquete MR, Barbez E, Kleine-Vehn J. Cellular auxin homeostasis: gatekeeping is housekeeping. Molecular Plant 5, 772-786.
95. Ruegger M, Dewey E, Gray WM, Hobbie L, Turner J, Estelle M. 1998. The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes and Development 12, 198-207. (Pubitemid 28060450)
96. Santner A, Calderon-Villalobos LIA, Estelle M. 2009. Plant hormones are versatile chemical regulators of plant growth. Nature Chemical Biology 5, 301-307.
97. Scanlon MJ. 2003. The polar auxin transport inhibitor N-1- naphthylphthalamic acid disrupts leaf initiation, KNOX protein regulation, and formation of leaf margins in maize. Plant Physiology 133, 597-605. (Pubitemid 37325672)
98. Scanlon MJ, Henderson DC, Bernstein B. 2002. SEMAPHORE1 functions during the regulation of ancestrally duplicated knox genes and polar auxin transport in maize. Development 129, 2663-2673. (Pubitemid 34874250)
99. Scarpella E, Marcos D, Friml J, Berleth T. 2006. Control of leaf vascular patterning by polar auxin transport. Genes and Development 20, 1015-1027.
100. Schlereth A, Moller B, Liu WL, Kientz M, Flipse J, Rademacher EH, Schmid M, Jurgens G, Weijers D. 2010. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature 464, 913-916.
101. Siegfried KR, Eshed Y, Baum SF, Otsuga D, Drews GN, Bowman JL. 1999. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 126, 4117-4128. (Pubitemid 29481568)
102. Skirpan A, Wu X, McSteen P. 2008. Genetic and physical interaction suggest that BARREN STALK1 is a target of BARREN INFLORESCENCE2 in maize inflorescence development. The Plant Journal 55, 787-797.
103. Skirpan A, Culler AH, Gallavotti A, Jackson D, Cohen JD, McSteen P. 2009. BARREN INFLORESCENCE2 interaction with ZmPIN1a suggests a role in auxin transport during maize inflorescence development. Plant and Cell Physiology 50, 652-657.
104. Smith RS, Guyomarc'h S, Mandel T, Reinhardt D, Kuhlemeier C, Prusinkiewicz P. 2006. A plausible model of phyllotaxis. Proceedings of the National Academy of Sciences, USA 103, 1301-1306. (Pubitemid 43191160)
105. Song Y, You J, Xiong L. 2009. Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 70, 297-309.
106. Sorefan K, Booker J, Haurogne K, et al. 2003. MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea. Genes and Development 17, 1469-1474. (Pubitemid 36734704)
107. Stepanova AN, Robertson-Hoyt J, Yun J, Benavente LM, Xie DY, DoleZal K, Schlereth A, Jurgens G, Alonso JM. 2008. TAA1- mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell 133, 177-191. (Pubitemid 351442990)
108. Studer A, Zhao Q, Ross-Ibarra J, Doebley J. 2011. Identification of a functional transposon insertion in the maize domestication gene tb1. Nature Genetics 43, 1160-1163.
109. Sun JQ, Qi LL, Li YN, Chu JF, Li CY. 2012. PIF4-mediated activation of YUCCA8 expression integrates temperature into the auxin pathway in regulating arabidopsis hypocotyl growth. PLoS Genetics 8, e1002594.
110. Szemenyei H, Hannon M, Long JA. 2008. TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 319, 1384-1386. (Pubitemid 351354872)
111. Takase T, Nakazawa M, Ishikawa A, Kawashima M, Ichikawa T, Takahashi N, Shimada H, Manabe K, Matsui M. 2004. ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation. The Plant Journal 37, 471-483. (Pubitemid 38258769)
112. Tan X, Calderon-Villalobos LIA, Sharon M, Zheng CX, Robinson CV, Estelle M, Zheng N. 2007. Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446, 640-645. (Pubitemid 46606890)
113. Tao Y, Ferrer JL, Ljung K, et al. 2008. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell 133, 164-176. (Pubitemid 351442992)
114. Tobena-Santamaria R, Bliek M, Ljung K, Sandberg G, Mol JNM, Souer E, Koes R. 2002. FLOOZY of petunia is a flavin monooxygenase- like protein required for the specification of leaf and flower architecture. Genes and Development 16, 753-763. (Pubitemid 34274044)
115. Tsiantis M, Brown MIN, Skibinski G, Langdale JA. Disruption of auxin transport is associated with aberrant leaf development in maize. Plant Physiology 121, 1163-1168.
116. Umehara M, Hanada A, Yoshida S, et al. 2008. Inhibition of shoot branching by new terpenoid plant hormones. Nature 455, 195-200.
117. Vernoux T, Brunoud G, Farcot E, et al. 2011. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Molecular Systems Biology 7, 508.
118. Vert G, Chory J
119. Villalobos LIAC. Lee S, De Oliveira C, et al. 2012. A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nature Chemical Biology 8, 477-485.
120. von Behrens I, Komatsu M, Zhang YX, Berendzen KW, Niu XM, Sakai H, Taramino G, Hochholdinger F. 2011. Rootless with undetectable meristem 1 encodes a monocot-specific AUX/IAA protein that controls embryonic seminal and post-embryonic lateral root initiation in maize. The Plant Journal 66, 341-353.
121. Wang D, Pei K, Fu Y, Sun Z, Li S, Liu H, Tang K, Han B, Tao Y. 2007. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene 394, 13-24.
122. Wang L, Kim J, Somers DE. 2013. Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription. Proceedings of the National Academy of Sciences, USA 110, 761-766.
123. Wang YJ, Deng DX, Bian YL, Lv YP, Xie Q. 2010. Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.). Molecular Biology Reports 37, 3991-4001.
124. Wang YJ, Deng DX, Shi YT, Miao N, Bian YL, Yin ZT. Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes. Molecular Biology Reports 39, 2401-2415.
125. Weigel D, Jurgens G. 2002. Stem cells that make stems. Nature 415, 751-754. (Pubitemid 34150488)
126. Weijers D, Schlereth A, Ehrismann JS, Schwank G, Kientz M, Jurgens G. 2006. Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Developmental Cell 10, 265-270. (Pubitemid 43174959)
127. Whipple CJ, Hall DH, DeBlasio S, Taguchi-Shiobara F, Schmidt RJ, Jackson DP. 2010. A conserved mechanism of bract suppression in the grass family. The Plant Cell 22, 565-578.
128. Whipple CJ, Kebrom TH, Weber AL, Yang F, Hall D, Meeley R, Schmidt R, Doebley J, Brutnell TP, Jackson DP. 2011. grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proceedings of the National Academy of Sciences, USA 108, E506-E512.
129. Won C, Shen XL, Mashiguchi K, Zheng ZY, Dai XH, Cheng YF, Kasahara H, Kamiya Y, Chory J, Zhao YD. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proceedings of the National Academy of Sciences, USA 108, 18518-18523.
130. Woo YM, Park HJ, Su'udi M, Yang JI, Park JJ, Back K, Park YM, An G. 2007. Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio. Plant Molecular Biology 65, 125-136.
131. Woodward AW, Bartel B. 2005. Auxin: regulation, action, and interaction. Annals of Botany 95, 707-735. (Pubitemid 41238659)
132. Wu XT, McSteen P. 2007. The role of auxin transport during inflorescence development in maize (Zea mays, Poaceae). American Journal of Botany 94, 1745-1755. (Pubitemid 350127578)
133. Xing HY, Pudake RN, Guo GG, Xing GF, Hu ZR, Zhang YR, Sun QX, Ni ZF. 2011. Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics 12, 178.
134. Xu M, Zhu L, Shou HX, Wu P. 2005. A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant and Cell Physiology 46, 1674-1681. (Pubitemid 41619485)
135. Yadav SR, Khanday I, Majhi BB, Veluthambi K, Vijayraghavan U. 2011. Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility. Plant and Cell Physiology 52, 2123-2135.
136. Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T. 2007. Auxin biosynthesis by the YUCCA genes in rice. Plant Physiology 143, 1362-1371. (Pubitemid 46941552)
137. Yang F, Wang Q, Schmitz G, Muller D, Theres K. 2012. The bHLH protein ROX acts in concert with RAX1 and LAS to modulate axillary meristem formation in Arabidopsis. The Plant Journal 71, 61-70.
138. Yoshihara T, Iino, M. 2007. Identification of the gravitropismrelated rice gene LAZY1 and elucidation of LAZY1-dependent and -independent gravity signaling pathways. Plant and Cell Physiology 48, 678-688. (Pubitemid 47356102)
139. Zhao YD. 2010. Auxin biosynthesis and its role in plant development. Annual Review of Plant Biology 61, 49-64.
140. Zhao YD, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J. 2001. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291, 306-309. (Pubitemid 32096316)