Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada

Microbial Drug Resistance

Volumn 19, Issue 3, 2013, Pages 175-184

  Glenn, LaShanda M ^a   Lindsey, Rebecca L ^a   Folster, Jason P ^b   Pecic, Gary ^b   Boerlin, Patrick ^c   Gilmour, Mathew W ^d   Harbottle, Heather ^e   Zhao, Shaohua ^e   Mcdermott, Patrick F ^e   Fedorka Cray, Paula J ^a   Frye, Jonathan G ^a  

^a RUSSELL RESEARCH CENTER   (United States)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c UNIVERSITY OF GUELPH   (Canada)

^d PUBLIC HEALTH AGENCY OF CANADA   (Canada)

^e CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIKACIN; AMINOGLYCOSIDE; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; BETA LACTAM ANTIBIOTIC; CEFOXITIN; CEFTIOFUR; CEFTRIAXONE; CHLORAMPHENICOL; CIPROFLOXACIN; GENTAMICIN; KANAMYCIN; NALIDIXIC ACID; STREPTOMYCIN; SULFAFURAZOLE; SULFAMETHOXAZOLE; TETRACYCLINE; TRIMETHOPRIM;

ALLELE; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATION; CANADA; DNA HYBRIDIZATION; GENE CASSETTE; GENETIC ASSOCIATION; GENETIC CODE; GENETIC VARIABILITY; HUMAN; MEAT; MICROARRAY ANALYSIS; MULTIDRUG RESISTANCE; NONHUMAN; PLASMID; PRIORITY JOURNAL; REPLICON; SALMONELLA ENTERICA; SEROTYPE; UNITED STATES;

ANIMALS; ANTI-BACTERIAL AGENTS; CANADA; CLUSTER ANALYSIS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; HUMANS; MEAT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASMIDS; SALMONELLA ENTERICA; SALMONELLA INFECTIONS; UNITED STATES;

ANIMALIA; SALMONELLA; SALMONELLA ENTERICA;

EID: 84878268797     PISSN: 10766294     EISSN: 19318448     Source Type: Journal    
DOI: 10.1089/mdr.2012.0177     Document Type: Article

References (43)

1. Alcaine, S.D., Y. Soyer, L.D. Warnick, W.L. Su, S. Sukhnanand, J. Richards, E.D. Fortes, P. McDonough, T.P. Root, N.B. Dumas, Y. Grohn, and M. Wiedmann. 2006. Multilocus sequence typing supports the hypothesis that cowand human-associated Salmonella isolates represent distinct and overlapping populations. Appl. Environ. Microbiol. 72:7575-7585. (Pubitemid 44927659)
2. Alcaine, S.D., L.D. Warnick, and M. Wiedmann. 2007. Antimicrobial resistance in nontyphoidal Salmonella. J. Food Prot. 70:780-790. (Pubitemid 46447010)
3. Allen, K.J., and C. Poppe. 2002. Occurrence and characterization of resistance to extended-spectrum cephalosporins mediated by beta-lactamase CMY-2 in Salmonella isolated from food-producing animals in Canada. Can. J. Vet. Res. 66:137-144.
4. Andrysiak, A.K., A.B. Olson, D.M. Tracz, K. Dore, R. Irwin, L.K. Ng, and M.W. Gilmour. 2008. Genetic characterization of clinical and agri-food isolates of multi drug resistant Salmonella enterica serovar Heidelberg from Canada. BMC Microbiol. 8:89.
5. Antunes, P., J. Machado, J.C. Sousa, and L. Peixe. 2005. Dissemination of sulfonamide resistance genes (sul1, sul2, and sul3) in Portuguese Salmonella enterica strains and relation with integrons. Antimicrob. Agents Chemother. 49:836-839. (Pubitemid 40175712)
6. Butaye, P., G.B. Michael, S. Schwarz, T.J. Barrett, A. Brisabois, and D.G. White. 2006. The clonal spread of multidrug- resistant non-typhi Salmonella serotypes. Microbes Infect. 8:1891-1897. (Pubitemid 44144555)
7. Call, D.R., M.S. Kang, J. Daniels, and T.E. Besser. 2006. Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray. J. Appl. Microbiol. 100:15-28.
8. Carattoli, A. 2003. Plasmid-mediated antimicrobial resistance in Salmonella enterica. Curr. Issues Mol. Biol. 5:113-122. (Pubitemid 37045510)
9. Carattoli, A., A. Bertini, L. Villa, V. Falbo, K.L. Hopkins, and E.J. Threlfall. 2005. Identification of plasmids by PCRbased replicon typing. J. Microbiol. Methods 63:219-228. (Pubitemid 41597366)
10. Carattoli, A., V. Miriagou, A. Bertini, A. Loli, C. Colinon, L. Villa, J.M. Whichard, and G.M. Rossolini. 2006. Replicon typing of plasmids encoding resistance to newer betalactams. Emerg. Infect. Dis. 12:1145-1148. (Pubitemid 44061290)
11. Carattoli, A., F. Tosini, W.P. Giles, M.E. Rupp, S.H. Hinrichs, F.J. Angulo, T.J. Barrett, and P.D. Fey. 2002. Characterization of plasmids carrying CMY-2 from expanded- spectrum cephalosporin-resistant Salmonella strains isolated in the United States between 1996 and 1998. Antimicrob. Agents Chemother. 46:1269-1272. (Pubitemid 34415301)
12. D'Aoust, J.Y. 1997. Salmonella species. In M.P. Doyle, L R. Beauchat, and T.J. Montville (eds.), Food Microbiology: Fundamentals and Frontiers. ASM Press, Washington D.C., pp. 129-158.
13. de Hoon, M.J., S. Imoto, J. Nolan, and S. Miyano. 2004. Open source clustering software. Bioinformatics 20:1453-1454. (Pubitemid 38931415)
14. Douard, G., K. Praud, A. Cloeckaert, and B. Doublet. 2010. The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family. PLoS One 5:e15302.
15. Dutil, L., R. Irwin, R. Finley, L.K. Ng, B. Avery, P. Boerlin, A.M. Bourgault, L. Cole, D. Daignault, A. Desruisseau, W. Demczuk, L. Hoang, G.B. Horsman, J. Ismail, F. Jamieson, A. Maki, A. Pacagnella, and D.R. Pillai. 2010. Ceftiofur resistance in Salmonella enterica serovar Heidelberg from chicken meat and humans, Canada. Emerg. Infect. Dis. 16: 48-54.
16. Eisen, M.B., P.T. Spellman, P.O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U. S. A. 95:14863-14868. (Pubitemid 29003722)
17. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
18. Fedorka-Cray, P.J., D. Dargatz, K. Petersen, and L. Tollefson. National antimicrobial resistance monitoring system. Veterinary strains. FDA CVM. USDA. 8-16-2005. USDA, ARS (Report).
19. Folster, J.P., G. Pecic, S. Bolcen, L. Theobald, K. Hise, A. Carattoli, S. Zhao, P.F. McDermott, and J.M. Whichard. 2010. Characterization of extended-spectrum cephalosporinresistant Salmonella enterica serovar Heidelberg isolated from humans in the United States. Foodborne Pathog. Dis. 7:181-187.
20. Folster, J.P., G. Pecic, A. McCullough, R. Rickert, and J.M. Whichard. 2011. Characterization of bla(CMY)-encoding plasmids among Salmonella isolated in the United States in 2007. Foodborne Pathog. Dis. 8:1289-1294.
21. Frye, J.G., and P.J. Fedorka-Cray. 2007. Prevalence, distribution and characterisation of ceftiofur resistance in Salmonella enterica isolated from animals in the USA from 1999 to 2003. Int. J. Antimicrob. Agents 30:134-142. (Pubitemid 46977186)
22. Frye, J.G., P.J. Fedorka-Cray, C.R. Jackson, and M. Rose. 2008. Analysis of Salmonella enterica with reduced susceptibility to the third-generation cephalosporin ceftriaxone isolated from U.S. cattle during 2000-2004. Microb. Drug Resist. 14:251-258.
23. Frye, J.G., R.L. Lindsey, G. Rondeau, S. Porwollik, F. Long, M. McClelland, C.R. Jackson, M.D. Englen, R.J. Meinersmann, M.E. Berrang, J.A. Davis, J.B. Barrett, J.B. Turpin, S.N. Thitaram, and P.J. Fedorka-Cray. 2009. Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microb. Drug Resist. 16:9-19.
24. Glenn, L.M., R.L. Lindsey, J.F. Frank, R.J. Meinersmann, M.D. Englen, P.J. Fedorka-Cray, and J.G. Frye. 2011. Analysis of antimicrobial resistance genes detected in multidrugresistant Salmonella enterica Serovar Typhimurium isolated from food animals. Microb. Drug Resist. 17:407-418
25. Johnson, T.J., D. Jordan, S. Kariyawasam, A.L. Stell, N.P. Bell, Y.M. Wannemuehler, C.F. Alarcon, G. Li, K.A. Tivendale, C.M. Logue, and L.K. Nolan. 2010. Sequence analysis and characterization of a transferable hybrid plasmid encoding multidrug resistance and enabling zoonotic potential for extraintestinal Escherichia coli. Infect. Immun. 78:1931-1942.
26. Johnson, T.J., S.M. Shepard, B. Rivet, J.L. Danzeisen, and A. Carattoli. 2011. Comparative genomics and phylogeny of the IncI1 plasmids: a common plasmid type among porcine enterotoxigenic Escherichia coli. Plasmid 66:144-151.
27. Johnson, T.J., Y.M. Wannemuehler, S.J. Johnson, C.M. Logue, D.G. White, C. Doetkott, and L.K. Nolan. 2007. Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates. Appl. Environ. Microbiol. 73:1976-1983. (Pubitemid 46449082)
28. Kang, M.S., T.E. Besser, D.D. Hancock, S. Porwollik, M. McClelland, and D.R. Call. 2006. Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica. Appl. Environ. Microbiol. 72:6938-6947. (Pubitemid 44748404)
29. Lavigne, J.P., and A.B. Blanc-Potard. 2008. Molecular evolution of Salmonella enterica serovar Typhimurium and pathogenic Escherichia coli: from pathogenesis to therapeutics. Infect. Genet. Evol. 8:217-226.
30. Lindsey, R.L., P.J. Fedorka-Cray, J.G. Frye, and R.J. Meinersmann. 2009. Inc A/C plasmids are prevalent in multidrug- resistant Salmonella enterica isolates. Appl. Environ. Microbiol. 75:1908-1915.
31. Lindsey, R.L., J.G. Frye, P.J. Fedorka-Cray, and R.J. Meinersmann. 2011. Microarray-based analysis of IncA/C plasmid-associated genes from multidrug-resistant Salmonella enterica. Appl. Environ. Microbiol. 77:6991-6999.
32. Lindsey, R.L., J.G. Frye, P.J. Fedorka-Cray, T.J. Welch, and R.J. Meinersmann. 2010. An oligonucleotide microarray to characterize multidrug resistant plasmids. J. Microbiol. Methods 81:96-100.
33. Lindsey, R.L., J.G. Frye, S.N. Thitaram, R.J. Meinersmann, P.J. Fedorka-Cray, and M.D. Englen. 2011. Characterization of multidrug-resistant Escherichia coli by antimicrobial resistance profiles, plasmid replicon typing, and pulsed-field gel electrophoresis. Microb. Drug Resist. 17:157-163.
34. (Pubitemid 44144557)
35. Parkhill, J., G. Dougan, K.D. James, N.R. Thomson, D. Pickard, J. Wain, C. Churcher, K.L. Mungall, S.D. Bentley, M.T. Holden, M. Sebaihia, S. Baker, D. Basham, K. Brooks, T. Chillingworth, P. Connerton, A. Cronin, P. Davis, R.M. Davies, L. Dowd, N. White, J. Farrar, T. Feltwell, N. Hamlin, A. Haque, T.T. Hien, S. Holroyd, K. Jagels, A. Krogh, T.S. Larsen, S. Leather, S. Moule, P. O'Gaora, C. Parry, M. Quail, K. Rutherford, M. Simmonds, J. Skelton, K. Stevens, S. Whitehead, and B.G. Barrell. 2001. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-852. (Pubitemid 33026852)
36. Poole, T.L., T.S. Edrington, D.M. Brichta-Harhay, A. Carattoli, R.C. Anderson, and D.J. Nisbet. 2009. Conjugative transferability of the A/C plasmids from Salmonella enterica isolates that possess or lack bla(CMY) in the A/C plasmid backbone. Foodborne Pathog. Dis. 6:1185-1194.
37. Saldanha, A.J. 2004. Java Treeview-extensible visualization of microarray data. Bioinformatics 20:3246-3248. (Pubitemid 39619217)
38. Scallan, E., R.M. Hoekstra, F.J. Angulo, R.V. Tauxe, M.A. Widdowson, S.L. Roy, J.L. Jones, and P.M. Griffin. 2011. Foodborne illness acquired in the United States-major pathogens. Emerg. Infect. Dis. 17:7-15.
39. Slatkin, M. 1994. Linkage disequilibrium in growing and stable populations. Genetics 137:331-336. (Pubitemid 24129299)
40. Wain, J., L.T. Diem Nga, C. Kidgell, K. James, S. Fortune, D.T. Song, T. Ali, O. Gaora, C. Parry, J. Parkhill, J. Farrar, N.J. White, and G. Dougan. 2003. Molecular analysis of incHI1 antimicrobial resistance plasmids from Salmonella serovar Typhi strains associated with typhoid fever. Antimicrob. Agents Chemother. 47:2732-2739. (Pubitemid 37040241)
41. Welch, T.J., J. Evenhuis, D.G. White, P.F. McDermott, H. Harbottle, R.A. Miller, M. Griffin, and D. Wise. 2009. IncA/C plasmid-mediated florfenicol resistance in the catfish pathogen Edwardsiella ictaluri. Antimicrob. Agents Chemother. 53:845-846.
42. Welch, T.J., W.F. Fricke, P.F. McDermott, D.G. White, M.L. Rosso, D.A. Rasko, M.K. Mammel, M. Eppinger, M.J. Rosovitz, D. Wagner, L. Rahalison, J.E. LeClerc, J.M. Hinshaw, L.E. Lindler, T.A. Cebula, E. Carniel, and J. Ravel. 2007. Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One 2:e309.
43. Zhao, S., S. Qaiyumi, S. Friedman, R. Singh, S.L. Foley, D.G. White, P.F. McDermott, T. Donkar, C. Bolin, S. Munro, E.J. Baron, and R.D. Walker. 2003. Characterization of Salmonella enterica serotype newport isolated from humans and food animals. J. Clin. Microbiol. 41: 5366-5371. (Pubitemid 37543218)