-
1
-
-
13444249995
-
VFDB: A reference database for bacterial virulence factors
-
Chen, L. H.; Yang, J.; Yu, J.; Ya, Z. J.; Sun, L. L.; Shen, Y.; Jin, Q. VFDB: a reference database for bacterial virulence factors Nucleic Acids Res. 2005, 33, D325-D328
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Chen, L.H.1
Yang, J.2
Yu, J.3
Ya, Z.J.4
Sun, L.L.5
Shen, Y.6
Jin, Q.7
-
2
-
-
38049173333
-
Wastewater treatment plants as a source of microbial pathogens in receiving watersheds
-
Okoh, A. I.; Odjadjare, E. E.; Igbinosa, E. O.; Osode, A. N. Wastewater treatment plants as a source of microbial pathogens in receiving watersheds Afr. J. Biotechnol. 2007, 6 (25) 2932-2944
-
(2007)
Afr. J. Biotechnol.
, vol.6
, Issue.25
, pp. 2932-2944
-
-
Okoh, A.I.1
Odjadjare, E.E.2
Igbinosa, E.O.3
Osode, A.N.4
-
3
-
-
77957021015
-
Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination
-
Soller, J. A.; Schoen, M. E.; Bartrand, T.; Ravenscroft, J. E.; Ashbolt, N. J. Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination Water Res. 2010, 44 (16) 4674-4691
-
(2010)
Water Res.
, vol.44
, Issue.16
, pp. 4674-4691
-
-
Soller, J.A.1
Schoen, M.E.2
Bartrand, T.3
Ravenscroft, J.E.4
Ashbolt, N.J.5
-
4
-
-
80052308847
-
Source tracking faecal contamination in an urbanised and a rural waterway in the Nelson-Tasman region, New Zealand
-
Kirs, M.; Harwood, V. J.; Fidler, A. E.; Gillespie, P. A.; Fyfe, W. R.; Blackwood, A. D.; Cornelisen, C. D. Source tracking faecal contamination in an urbanised and a rural waterway in the Nelson-Tasman region, New Zealand New Zeal. J. Mar. Fresh. Res. 2011, 45 (1) 43-58
-
(2011)
New Zeal. J. Mar. Fresh. Res.
, vol.45
, Issue.1
, pp. 43-58
-
-
Kirs, M.1
Harwood, V.J.2
Fidler, A.E.3
Gillespie, P.A.4
Fyfe, W.R.5
Blackwood, A.D.6
Cornelisen, C.D.7
-
5
-
-
0034177297
-
Water as consumed and its impact on the consumer - Do we understand the variables?
-
Bates, A. J. Water as consumed and its impact on the consumer-do we understand the variables? Food Chem. Toxicol. 2000, 38, S29-S36
-
(2000)
Food Chem. Toxicol.
, vol.38
-
-
Bates, A.J.1
-
6
-
-
4344675334
-
John Snow, William Farr and the 1849 outbreak of cholera that affected London: A reworking of the data highlights the importance of the water supply
-
Bingham, P.; Verlander, N. Q.; Cheal, M. J. John Snow, William Farr and the 1849 outbreak of cholera that affected London: a reworking of the data highlights the importance of the water supply Public Health 2004, 118 (6) 387-394
-
(2004)
Public Health
, vol.118
, Issue.6
, pp. 387-394
-
-
Bingham, P.1
Verlander, N.Q.2
Cheal, M.J.3
-
7
-
-
78449255402
-
Alternative routes for dissemination of Legionella pneumophila causing three outbreaks in Norway
-
Olsen, J. S.; Aarskaug, T.; Thrane, I.; Pourcel, C.; Ask, E.; Johansen, G.; Waagen, V.; Blatny, J. M. Alternative routes for dissemination of Legionella pneumophila causing three outbreaks in Norway Environ. Sci. Technol. 2010, 44 (22) 8712-8717
-
(2010)
Environ. Sci. Technol.
, vol.44
, Issue.22
, pp. 8712-8717
-
-
Olsen, J.S.1
Aarskaug, T.2
Thrane, I.3
Pourcel, C.4
Ask, E.5
Johansen, G.6
Waagen, V.7
Blatny, J.M.8
-
8
-
-
0018902755
-
Enumeration of potentially pathogenic bacteria from sewage sludges
-
Dudley, D. J.; Guentzel, M. N.; Ibarra, M. J.; Moore, B. E.; Sagik, B. P. Enumeration of potentially pathogenic bacteria from sewage sludges Appl. Environ. Microbiol. 1980, 39 (1) 118-126
-
(1980)
Appl. Environ. Microbiol.
, vol.39
, Issue.1
, pp. 118-126
-
-
Dudley, D.J.1
Guentzel, M.N.2
Ibarra, M.J.3
Moore, B.E.4
Sagik, B.P.5
-
9
-
-
1542298204
-
Retention and removal of pathogenic bacteria in wastewater percolating through porous media: A review
-
Stevik, T. K.; Aa, K.; Ausland, G.; Hanssen, J. F. Retention and removal of pathogenic bacteria in wastewater percolating through porous media: a review Water Res. 2004, 38 (6) 1355-1367
-
(2004)
Water Res.
, vol.38
, Issue.6
, pp. 1355-1367
-
-
Stevik, T.K.1
Aa, K.2
Ausland, G.3
Hanssen, J.F.4
-
10
-
-
0033973159
-
Evaluation of occupational transmission of hepatitis A virus among wastewater workers
-
Trout, D.; Mueller, C.; Venczel, L.; Krake, A. Evaluation of occupational transmission of hepatitis A virus among wastewater workers J. Occup. Environ. Med. 2000, 42 (1) 83-87
-
(2000)
J. Occup. Environ. Med.
, vol.42
, Issue.1
, pp. 83-87
-
-
Trout, D.1
Mueller, C.2
Venczel, L.3
Krake, A.4
-
11
-
-
0031047383
-
Hepatitis A among workers from a waste water treatment plant during a small community outbreak
-
DeSerres, G.; Laliberte, D. Hepatitis A among workers from a waste water treatment plant during a small community outbreak Occup. Environ. Med. 1997, 54 (1) 60-62
-
(1997)
Occup. Environ. Med.
, vol.54
, Issue.1
, pp. 60-62
-
-
Deserres, G.1
Laliberte, D.2
-
12
-
-
33646766810
-
Molecular techniques in wastewater: Understanding microbial communities, detecting pathogens, and real-time process control
-
Gilbride, K. A.; Lee, D. Y.; Beaudette, L. A. Molecular techniques in wastewater: Understanding microbial communities, detecting pathogens, and real-time process control J. Microbiol. Meth. 2006, 66 (1) 1-20
-
(2006)
J. Microbiol. Meth.
, vol.66
, Issue.1
, pp. 1-20
-
-
Gilbride, K.A.1
Lee, D.Y.2
Beaudette, L.A.3
-
13
-
-
58049185696
-
Fate of pathogenic microorganisms and indicators in secondary activated sludge wastewater treatment plants
-
Wen, Q.; Tutuka, C.; Keegan, A.; Jin, B. Fate of pathogenic microorganisms and indicators in secondary activated sludge wastewater treatment plants J. Environ. Manage. 2009, 90 (3) 1442-1447
-
(2009)
J. Environ. Manage.
, vol.90
, Issue.3
, pp. 1442-1447
-
-
Wen, Q.1
Tutuka, C.2
Keegan, A.3
Jin, B.4
-
14
-
-
0032828437
-
PCR and the detection of microbial pathogens in water and wastewater
-
Toze, S. PCR and the detection of microbial pathogens in water and wastewater Water Res. 1999, 33 (17) 3545-3556
-
(1999)
Water Res.
, vol.33
, Issue.17
, pp. 3545-3556
-
-
Toze, S.1
-
15
-
-
33646368924
-
Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR
-
Lee, D. Y.; Shannon, K.; Beaudette, L. A. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR J. Microbiol. Meth. 2006, 65 (3) 453-467
-
(2006)
J. Microbiol. Meth.
, vol.65
, Issue.3
, pp. 453-467
-
-
Lee, D.Y.1
Shannon, K.2
Beaudette, L.A.3
-
16
-
-
43849085957
-
Development and application of an oligonucleotide microarray and real-time quantitative PCR for detection of wastewater bacterial pathogens
-
Lee, D. Y.; Lauder, H.; Cruwys, H.; Falletta, P.; Beaudette, L. A. Development and application of an oligonucleotide microarray and real-time quantitative PCR for detection of wastewater bacterial pathogens Sci. Total Environ. 2008, 398 (1-3) 203-211
-
(2008)
Sci. Total Environ.
, vol.398
, Issue.13
, pp. 203-211
-
-
Lee, D.Y.1
Lauder, H.2
Cruwys, H.3
Falletta, P.4
Beaudette, L.A.5
-
17
-
-
37449004398
-
Behaviour of pathogenic and indicator bacteria during urban wastewater treatment and sludge composting, as revealed by quantitative PCR
-
Wery, N.; Lhoutellier, C.; Ducray, F.; Delgenes, J. P.; Godon, J. J. Behaviour of pathogenic and indicator bacteria during urban wastewater treatment and sludge composting, as revealed by quantitative PCR Water Res. 2008, 42 (1-2) 53-62
-
(2008)
Water Res.
, vol.42
, Issue.12
, pp. 53-62
-
-
Wery, N.1
Lhoutellier, C.2
Ducray, F.3
Delgenes, J.P.4
Godon, J.J.5
-
18
-
-
0037401015
-
Detection of bacterial pathogens in environmental samples using DNA microarrays
-
Call, D. R.; Borucki, M. K.; Loge, F. J. Detection of bacterial pathogens in environmental samples using DNA microarrays J. Microbiol. Meth. 2003, 53 (2) 235-243
-
(2003)
J. Microbiol. Meth.
, vol.53
, Issue.2
, pp. 235-243
-
-
Call, D.R.1
Borucki, M.K.2
Loge, F.J.3
-
19
-
-
84864440400
-
Metagenomic microbial community profiling using unique clade-specific marker genes
-
Segata, N.; Waldron, L.; Ballarini, A.; Narasimhan, V.; Jousson, O.; Huttenhower, C. Metagenomic microbial community profiling using unique clade-specific marker genes Nat. Methods 2012, 9 (8) 811-814
-
(2012)
Nat. Methods
, vol.9
, Issue.8
, pp. 811-814
-
-
Segata, N.1
Waldron, L.2
Ballarini, A.3
Narasimhan, V.4
Jousson, O.5
Huttenhower, C.6
-
20
-
-
55549099265
-
Metagenomic diagnosis of bacterial infections
-
Nakamura, S.; Maeda, N.; Miron, I. M.; Yoh, M.; Izutsu, K.; Kataoka, C.; Honda, T.; Yasunaga, T.; Nakaya, T.; Kawai, J.; Hayashizaki, Y.; Horii, T.; Iida, T. Metagenomic diagnosis of bacterial infections Emerg. Infect. Dis. 2008, 14 (11) 1784-1786
-
(2008)
Emerg. Infect. Dis.
, vol.14
, Issue.11
, pp. 1784-1786
-
-
Nakamura, S.1
Maeda, N.2
Miron, I.M.3
Yoh, M.4
Izutsu, K.5
Kataoka, C.6
Honda, T.7
Yasunaga, T.8
Nakaya, T.9
Kawai, J.10
Hayashizaki, Y.11
Horii, T.12
Iida, T.13
-
21
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios, G.; Druce, J.; Du, L.; Tran, T.; Birch, C.; Briese, T.; Conlan, S.; Quan, P.; Hui, J.; Marshall, J.; Simons, J. F.; Egholm, M.; Paddock, C. D.; Shieh, W.; Goldsmith, C. S.; Zaki, S. R.; Catton, M.; Lipkin, W. I. A new arenavirus in a cluster of fatal transplant-associated diseases New Engl. J. Med. 2008, 358 (10) 991-998
-
(2008)
New Engl. J. Med.
, vol.358
, Issue.10
, pp. 991-998
-
-
Palacios, G.1
Druce, J.2
Du, L.3
Tran, T.4
Birch, C.5
Briese, T.6
Conlan, S.7
Quan, P.8
Hui, J.9
Marshall, J.10
Simons, J.F.11
Egholm, M.12
Paddock, C.D.13
Shieh, W.14
Goldsmith, C.S.15
Zaki, S.R.16
Catton, M.17
Lipkin, W.I.18
-
22
-
-
67249156188
-
Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever-Associated Arenavirus from Southern Africa
-
Briese, T.; Paweska, J. T.; McMullan, L. K.; Hutchison, S. K.; Street, C.; Palacios, G.; Khristova, M. L.; Weyer, J.; Swanepoel, R.; Egholm, M.; Nichol, S. T.; Lipkin, W. I. Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever-Associated Arenavirus from Southern Africa. PLoS Pathog. 2009, 5 (5).
-
(2009)
PLoS Pathog.
, vol.5
, Issue.5
-
-
Briese, T.1
Paweska, J.T.2
McMullan, L.K.3
Hutchison, S.K.4
Street, C.5
Palacios, G.6
Khristova, M.L.7
Weyer, J.8
Swanepoel, R.9
Egholm, M.10
Nichol, S.T.11
Lipkin, W.I.12
-
23
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris, S. R.; Feil, E. J.; Holden, M. T. G.; Quail, M. A.; Nickerson, E. K.; Chantratita, N.; Gardete, S.; Tavares, A.; Day, N.; Lindsay, J. A.; Edgeworth, J. D.; de Lencastre, H.; Parkhill, J.; Peacock, S. J.; Bentley, S. D. Evolution of MRSA during hospital transmission and intercontinental spread Science 2010, 327 (5964) 469-474
-
(2010)
Science
, vol.327
, Issue.5964
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.G.3
Quail, M.A.4
Nickerson, E.K.5
Chantratita, N.6
Gardete, S.7
Tavares, A.8
Day, N.9
Lindsay, J.A.10
Edgeworth, J.D.11
De Lencastre, H.12
Parkhill, J.13
Peacock, S.J.14
Bentley, S.D.15
-
24
-
-
84861345451
-
454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
-
Zhang, T.; Shao, M. F.; Ye, L. 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants ISME J. 2012, 6 (6) 1137-1147
-
(2012)
ISME J.
, vol.6
, Issue.6
, pp. 1137-1147
-
-
Zhang, T.1
Shao, M.F.2
Ye, L.3
-
25
-
-
84877765843
-
Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing
-
101007/s00253-012-4244-4
-
Guo, F.; Zhang, T. Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing Appl. Microbiol. Biotechnol. 2012, 10.1007/s00253-012-4244-4
-
(2012)
Appl. Microbiol. Biotechnol.
-
-
Guo, F.1
Zhang, T.2
-
26
-
-
38549107537
-
VFDB 2008 release: An enhanced web-based resource for comparative pathogenomics
-
Yang, J.; Chen, L. H.; Sun, L. L.; Yu, J.; Jin, Q. VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics Nucleic Acids Res. 2008, 36, D539-D542
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Yang, J.1
Chen, L.H.2
Sun, L.L.3
Yu, J.4
Jin, Q.5
-
27
-
-
84861904854
-
VFDB 2012 update: Toward the genetic diversity and molecular evolution of bacterial virulence factors
-
Chen, L. H.; Xiong, Z. H.; Sun, L. L.; Yang, J.; Jin, Q. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors Nucleic Acids Res. 2012, 40 (D1) D641-D645
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.D1
-
-
Chen, L.H.1
Xiong, Z.H.2
Sun, L.L.3
Yang, J.4
Jin, Q.5
-
28
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z.; Hugenholtz, P.; Larsen, N.; Rojas, M.; Brodie, E. L.; Keller, K.; Huber, T.; Dalevi, D.; Hu, P.; Andersen, G. L. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB Appl. Environ. Microbiol. 2006, 72 (7) 5069-5072
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.7
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
29
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson, D. H.; Auch, A. F.; Qi, J.; Schuster, S. C. MEGAN analysis of metagenomic data Genome Res. 2007, 17 (3) 377-386
-
(2007)
Genome Res.
, vol.17
, Issue.3
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
30
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang, R.; Waldrop, M. P.; DeAngelis, K. M.; David, M. M.; Chavarria, K. L.; Blazewicz, S. J.; Rubin, E. M.; Jansson, J. K. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw Nature 2011, 480 (7377) 368-U120
-
(2011)
Nature
, vol.480
, Issue.7377
-
-
MacKelprang, R.1
Waldrop, M.P.2
Deangelis, K.M.3
David, M.M.4
Chavarria, K.L.5
Blazewicz, S.J.6
Rubin, E.M.7
Jansson, J.K.8
-
31
-
-
84872323101
-
Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets
-
Cai, L.; Ye, L.; Tong, A. H. Y.; Lok, S.; Zhang, T. Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets PLoS One 2013, 8 (1) e53649
-
(2013)
PLoS One
, vol.8
, Issue.1
, pp. 53649
-
-
Cai, L.1
Ye, L.2
Tong, A.H.Y.3
Lok, S.4
Zhang, T.5
-
32
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
Baker, G. C.; Smith, J. J.; Cowan, D. A. Review and re-analysis of domain-specific 16S primers J. Microbiol. Meth. 2003, 55 (3) 541-555
-
(2003)
J. Microbiol. Meth.
, vol.55
, Issue.3
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
33
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn, T. C. Field guide to next-generation DNA sequencers Mol. Ecol. Resour. 2011, 11 (5) 759-769
-
(2011)
Mol. Ecol. Resour.
, vol.11
, Issue.5
, pp. 759-769
-
-
Glenn, T.C.1
-
34
-
-
80052240448
-
Pathogenic bacteria in sewage treatment plants as revealed by 454 pyrosequencing
-
Ye, L.; Zhang, T. Pathogenic bacteria in sewage treatment plants as revealed by 454 pyrosequencing Environ. Sci. Technol. 2011, 45 (17) 7173-7179
-
(2011)
Environ. Sci. Technol.
, vol.45
, Issue.17
, pp. 7173-7179
-
-
Ye, L.1
Zhang, T.2
-
35
-
-
33646556997
-
PCR amplification of the IS6110 insertion element of Mycobacterium tuberculosis in fecal samples from patients with intestinal tuberculosis
-
Balamurugan, R.; Venkataraman, S.; John, K. R.; Ramakrishna, B. S. PCR amplification of the IS6110 insertion element of Mycobacterium tuberculosis in fecal samples from patients with intestinal tuberculosis J. Clin. Microbiol. 2006, 44 (5) 1884-1886
-
(2006)
J. Clin. Microbiol.
, vol.44
, Issue.5
, pp. 1884-1886
-
-
Balamurugan, R.1
Venkataraman, S.2
John, K.R.3
Ramakrishna, B.S.4
-
36
-
-
79959267413
-
Mycobacterium behavior in wastewater treatment plant, a bacterial model distinct from Escherichia coli and Enterococci
-
Radomski, N.; Betelli, L.; Moilleron, R.; Haenn, S.; Moulin, L.; Cambau, E.; Rocher, V.; Goncalves, A.; Lucas, F. S. Mycobacterium behavior in wastewater treatment plant, a bacterial model distinct from Escherichia coli and Enterococci Environ. Sci. Technol. 2011, 45 (12) 5380-5386
-
(2011)
Environ. Sci. Technol.
, vol.45
, Issue.12
, pp. 5380-5386
-
-
Radomski, N.1
Betelli, L.2
Moilleron, R.3
Haenn, S.4
Moulin, L.5
Cambau, E.6
Rocher, V.7
Goncalves, A.8
Lucas, F.S.9
-
37
-
-
80053908791
-
Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge
-
Zhang, T.; Zhang, X. X.; Ye, L. Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge. PLoS One 2011, 6 (10).
-
(2011)
PLoS One
, vol.6
, Issue.10
-
-
Zhang, T.1
Zhang, X.X.2
Ye, L.3
-
38
-
-
79953240174
-
Occurrence, abundance, and diversity of tetracycline resistance genes in 15 sewage treatment plants across China and other global locations
-
Zhang, X. X.; Zhang, T. Occurrence, abundance, and diversity of tetracycline resistance genes in 15 sewage treatment plants across China and other global locations Environ. Sci. Technol. 2011, 45 (7) 2598-2604
-
(2011)
Environ. Sci. Technol.
, vol.45
, Issue.7
, pp. 2598-2604
-
-
Zhang, X.X.1
Zhang, T.2
-
39
-
-
84865718203
-
Prevalence of clinically relevant antibiotic resistance genes in surface water samples collected from Germany and Australia
-
Stoll, C.; Sidhu, J. P.; Tiehm, A.; Toze, S. Prevalence of clinically relevant antibiotic resistance genes in surface water samples collected from Germany and Australia Environ. Sci. Technol. 2012, 46 (17) 9716-9726
-
(2012)
Environ. Sci. Technol.
, vol.46
, Issue.17
, pp. 9716-9726
-
-
Stoll, C.1
Sidhu, J.P.2
Tiehm, A.3
Toze, S.4
|