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Volumn 83 A, Issue 6, 2013, Pages 561-567

CHIC-an automated approach for the detection of dynamic variations in complex microbial communities

Author keywords

Automated pattern analysis; Bacterial communities; Bioprocesses; DNA pattern analysis; Microbial community dynamics; Person independent data evaluation

Indexed keywords

BACTERIAL DNA;

EID: 84878208307     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.22286     Document Type: Article
Times cited : (53)

References (21)
  • 1
    • 43049141567 scopus 로고    scopus 로고
    • Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors
    • Talbot G, Topp E, Palin MF, Massé DI. Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors. Water Res 2008; 42: 513-537.
    • (2008) Water Res , vol.42 , pp. 513-537
    • Talbot, G.1    Topp, E.2    Palin, M.F.3    Massé, D.I.4
  • 2
    • 78650008729 scopus 로고    scopus 로고
    • Linking bacterial identities and ecosystem processes: Can 'omic' analyses be more than the sum of their parts?
    • Morales SE, Holben WE. Linking bacterial identities and ecosystem processes: Can 'omic' analyses be more than the sum of their parts?. FEMS Microbiol Ecol 2011; 75: 2-16.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 2-16
    • Morales, S.E.1    Holben, W.E.2
  • 3
    • 84855301134 scopus 로고    scopus 로고
    • Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
    • Günther S, Koch C, Hübschmann T, Röske I, Müller RA, Bley T, Harms H, Müller S. Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment. Environ Sci Technol 2012; 46: 84-92.
    • (2012) Environ Sci Technol , vol.46 , pp. 84-92
    • Günther, S.1    Koch, C.2    Hübschmann, T.3    Röske, I.4    Müller, R.A.5    Bley, T.6    Harms, H.7    Müller, S.8
  • 4
    • 63849216934 scopus 로고    scopus 로고
    • Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′,6′-diamidino-2-phenylindole) and tetracycline labeling
    • Günther S, Trutnau M, Kleinsteuber S, Hause G, Bley, T, Röske I, Harms H, Müller S. Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′, 6′-diamidino-2-phenylindole) and tetracycline labeling. Appl Environ Microbiol 2009; 75: 2111-2121.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2111-2121
    • Günther, S.1    Trutnau, M.2    Kleinsteuber, S.3    Hause, G.4    Bley, T.5    Röske, I.6    Harms, H.7    Müller, S.8
  • 5
    • 84872039001 scopus 로고    scopus 로고
    • Cytometric fingerprinting for analysing microbial intra-community structure variation and identifying sub-community function
    • Koch C, Günther S, Desta AF, Hübschmann T, Müller S. Cytometric fingerprinting for analysing microbial intra-community structure variation and identifying sub-community function. Nat Protocols 2013; 8: 190-202.
    • (2013) Nat Protocols , vol.8 , pp. 190-202
    • Koch, C.1    Günther, S.2    Desta, A.F.3    Hübschmann, T.4    Müller, S.5
  • 6
    • 0035397276 scopus 로고    scopus 로고
    • Pattern recognition in flow cytometry
    • Boddy L, Wilkins MF, Morris CW. Pattern recognition in flow cytometry. Cytometry 2001; 44: 195-209.
    • (2001) Cytometry , vol.44 , pp. 195-209
    • Boddy, L.1    Wilkins, M.F.2    Morris, C.W.3
  • 7
    • 77954270805 scopus 로고    scopus 로고
    • A survey of flow cytometry data analysis methods
    • Article ID 584603.
    • Bashashati A, Brinkman R. A survey of flow cytometry data analysis methods. Adv Bioinformatics 2009; Article ID 584603.
    • (2009) Adv Bioinformatics
    • Bashashati, A.1    Brinkman, R.2
  • 8
    • 0035450879 scopus 로고    scopus 로고
    • Probability binning comparison: A metric for quantitating multivariate distribution differences
    • Roederer M, Moore W, Treister A, Hardy RR, Herzenberg LA. Probability binning comparison: A metric for quantitating multivariate distribution differences. Cytometry 2001; 45: 47-55.
    • (2001) Cytometry , vol.45 , pp. 47-55
    • Roederer, M.1    Moore, W.2    Treister, A.3    Hardy, R.R.4    Herzenberg, L.A.5
  • 9
    • 77954223563 scopus 로고    scopus 로고
    • FlowFP: A bioconductor package for fingerprinting flow cytometric data
    • Rogers WT, Holyst HA. FlowFP: A bioconductor package for fingerprinting flow cytometric data. Adv Bioinformatics 2009: 193947.
    • (2009) Adv Bioinformatics , pp. 193947
    • Rogers, W.T.1    Holyst, H.A.2
  • 10
    • 84855306674 scopus 로고    scopus 로고
    • Flow cytometry for fast microbial community fingerprinting
    • De Roy K, Clement L, Thas O, Wang Y, Boon N. Flow cytometry for fast microbial community fingerprinting. Water Res 2012; 46: 907-919.
    • (2012) Water Res , vol.46 , pp. 907-919
    • De Roy, K.1    Clement, L.2    Thas, O.3    Wang, Y.4    Boon, N.5
  • 11
    • 80052744267 scopus 로고    scopus 로고
    • Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
    • Müller S,Bley T, editors., Berlin: Springer
    • Bombach P, Hübschmann T, Fetzer I, Kleinsteuber S, Geyer R, Harms H, Müller S. Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis. In: Müller S, Bley T, editors. Advances in Biochemical Engineering and Biotechnology, Vol. 124. Berlin: Springer; 2011. pp 151-181.
    • (2011) Advances in Biochemical Engineering and Biotechnology , vol.124 , pp. 151-181
    • Bombach, P.1    Hübschmann, T.2    Fetzer, I.3    Kleinsteuber, S.4    Geyer, R.5    Harms, H.6    Müller, S.7
  • 12
    • 84865575635 scopus 로고    scopus 로고
    • High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems
    • Müller S, Hübschmann T, Kleinsteuber S, Vogt C. High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems. Methods 2012; 57: 338-349.
    • (2012) Methods , vol.57 , pp. 338-349
    • Müller, S.1    Hübschmann, T.2    Kleinsteuber, S.3    Vogt, C.4
  • 13
    • 34548689851 scopus 로고    scopus 로고
    • Modes of cytometric bacterial DNA pattern: A tool for pursuing growth
    • Müller S. Modes of cytometric bacterial DNA pattern: A tool for pursuing growth. Cell Prolif 2007; 40: 621-639.
    • (2007) Cell Prolif , vol.40 , pp. 621-639
    • Müller, S.1
  • 16
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing;. Available at
    • R Development Core Team. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2011. Available at http://www.R-project.org/.
    • (2011) R: A language and environment for statistical computing
  • 18
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
    • Hamady M, Knight R. Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. Genome Res 2009; 19: 1141-1152.
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 20
    • 40749111960 scopus 로고    scopus 로고
    • Using flowViz to visualize flow cytometry data
    • Sarkar D, Le Meur N, Gentleman R. Using flowViz to visualize flow cytometry data. Bioinformatics 2008; 24: 878-879.
    • (2008) Bioinformatics , vol.24 , pp. 878-879
    • Sarkar, D.1    Le Meur, N.2    Gentleman, R.3
  • 21
    • 84864334511 scopus 로고    scopus 로고
    • iFlow: A graphical user interface for flow cytometry tools in bioconductor
    • Lee K, Hahne F, Sarkar D, Gentleman R. iFlow: A graphical user interface for flow cytometry tools in bioconductor. Adv Bioinformatics 2009: 103839.
    • (2009) Adv Bioinformatics , pp. 103839
    • Lee, K.1    Hahne, F.2    Sarkar, D.3    Gentleman, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.