메뉴 건너뛰기




Volumn 8, Issue 1, 2013, Pages 190-202

Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL LABELING; CELL SELECTION; COMMUNITY STRUCTURE; CONTROLLED STUDY; CYTOMETRIC FINGERPRINTING; FLOW CYTOMETRY; LIGHT SCATTERING; MICROBIAL COMMUNITY; MOLECULAR PHYLOGENY; NONHUMAN; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES COMPOSITION;

EID: 84872039001     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2012.149     Document Type: Article
Times cited : (97)

References (31)
  • 1
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and tertestrial habitats
    • Staley, J.T. & Konopka, A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and tertestrial habitats. Ann. Rev. Microbiol. 39, 321-346 (1985).
    • (1985) Ann. Rev. Microbiol. , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 2
    • 60950504640 scopus 로고    scopus 로고
    • Discovery of new compounds in nature
    • Clardy, J. Discovery of new compounds in nature. Proc. Am. Philos. Soc. 151, 201-210 (2007).
    • (2007) Proc. Am. Philos. Soc. , vol.151 , pp. 201-210
    • Clardy, J.1
  • 3
    • 0028486639 scopus 로고
    • In situ characteriszation of the microbial consortia active in two wastewater treatment plants
    • Manz, W., Wagner, M., Amann, R. & Schleifer, K.-H. In situ characteriszation of the microbial consortia active in two wastewater treatment plants. Water Res. 28, 1715-1723 (1994).
    • (1994) Water Res. , vol.28 , pp. 1715-1723
    • Manz, W.1    Wagner, M.2    Amann, R.3    Schleifer, K.-H.4
  • 4
    • 37449010517 scopus 로고    scopus 로고
    • Flow-cytometric total bacterial cell counts as a descriptive microbiological parameter for drinking water treatment processes
    • Hammes, F. et al. Flow-cytometric total bacterial cell counts as a descriptive microbiological parameter for drinking water treatment processes. Water Res. 42, 269-277 (2008).
    • (2008) Water Res. , vol.42 , pp. 269-277
    • Hammes, F.1
  • 5
    • 77953254182 scopus 로고    scopus 로고
    • Functional single-cell analyses: Flow cytometry and cell sorting of microbial populations and communities
    • Müller, S. & Nebe-von-Caron, G. Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities. FEMS Microbiol. Rev. 34, 554-587 (2010).
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 554-587
    • Müller, S.1    Nebe-Von-Caron, G.2
  • 6
    • 77955051770 scopus 로고    scopus 로고
    • Past present and future applications of flow cytometry in aquatic microbiology
    • Wang, Y., Hammes, F., De Roy, K., Verstraete, W. & Boon, N. Past, present and future applications of flow cytometry in aquatic microbiology. Trends Biotechnol. 28, 416-424 (2010).
    • (2010) Trends Biotechnol. , vol.28 , pp. 416-424
    • Wang, Y.1    Hammes, F.2    De Roy, K.3    Verstraete, W.4    Boon, N.5
  • 7
    • 84855301134 scopus 로고    scopus 로고
    • Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment
    • Günther, S. et al. Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment. Environ. Sci. Technol. 46, 84-92 (2012).
    • (2012) Environ. Sci. Technol. , vol.46 , pp. 84-92
    • Günther, S.1
  • 8
    • 34548689851 scopus 로고    scopus 로고
    • Modes of cytometric bacterial DNA pattern: A tool for pursuing growth
    • DOI 10.1111/j.1365-2184.2007.00465.x
    • Müller, S. Modes of cytometric bacterial DNA pattern: a tool for pursuing growth. Cell Prolif. 40, 621-639 (2007). (Pubitemid 47416555)
    • (2007) Cell Proliferation , vol.40 , Issue.5 , pp. 621-639
    • Muller, S.1
  • 9
    • 77950627389 scopus 로고    scopus 로고
    • Origin and analysis of microbial population heterogeneity in bioprocesses
    • Müller, S., Harms, H. & Bley, T. Origin and analysis of microbial population heterogeneity in bioprocesses. Curr. Opin. Biotechnol. 21, 100-113 (2010).
    • (2010) Curr. Opin. Biotechnol. , vol.21 , pp. 100-113
    • Müller, S.1    Harms, H.2    Bley, T.3
  • 10
    • 33845230421 scopus 로고    scopus 로고
    • A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations
    • DOI 10.1002/pmic.200600244
    • Wiacek, C., Müller, S. & Benndorf, D. A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations. Proteomics 6, 5983-5994 (2006). (Pubitemid 44851384)
    • (2006) Proteomics , vol.6 , Issue.22 , pp. 5983-5994
    • Wiacek, C.1    Muller, S.2    Benndorf, D.3
  • 11
    • 84865575635 scopus 로고    scopus 로고
    • High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems
    • Müller, S., Hübschmann, T., Kleinsteuber, S. & Vogt, C. High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems. Methods 57, 338-349 (2012).
    • (2012) Methods , vol.57 , pp. 338-349
    • Müller, S.1    Hübschmann, T.2    Kleinsteuber, S.3    Vogt, C.4
  • 12
    • 79955535793 scopus 로고    scopus 로고
    • Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry
    • Harnisch, F. et al. Revealing the electrochemically driven selection in natural community derived microbial biofilms using flow-cytometry. Energy Environ. Sci. 4, 1265-1267 (2011).
    • (2011) Energy Environ. Sci. , vol.4 , pp. 1265-1267
    • Harnisch, F.1
  • 13
    • 80052739603 scopus 로고    scopus 로고
    • Electroactive mixed culture derived biofilms in microbial bioelectrochemical systems: The role of pH on biofilm formation, performance and composition
    • Patil, S.A. et al. Electroactive mixed culture derived biofilms in microbial bioelectrochemical systems: the role of pH on biofilm formation, performance and composition. Bioresour. Technol. 102, 9683-9690 (2011).
    • (2011) Bioresour. Technol. , vol.102 , pp. 9683-9690
    • Patil, S.A.1
  • 14
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
    • Hamady, M. & Knight, R. Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res. 19, 1141-1152 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 15
    • 84355163060 scopus 로고    scopus 로고
    • High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
    • Martinez-Garcia, M. et al. High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J. 6, 113-123 (2012).
    • (2012) ISME J. , vol.6 , pp. 113-123
    • Martinez-Garcia, M.1
  • 16
    • 38049134986 scopus 로고    scopus 로고
    • Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling
    • Hartmann, M. & Widmer, F. Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling. FEMS Microbiol. Ecol. 63, 249-260 (2007).
    • (2007) FEMS Microbiol. Ecol. , vol.63 , pp. 249-260
    • Hartmann, M.1    Widmer, F.2
  • 17
    • 77951498638 scopus 로고    scopus 로고
    • Experimental factors affecting PCR-based estimates of microbial species richness and evenness
    • Engelbrektson, A. et al. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J. 4, 642-647 (2010).
    • (2010) ISME J. , vol.4 , pp. 642-647
    • Engelbrektson, A.1
  • 18
    • 0008467605 scopus 로고
    • Pseudomonas natrigens, a marine bacterium with a generation time of less than 10 minutes
    • Eagon, R.G. Pseudomonas natrigens, a marine bacterium with a generation time of less than 10 minutes. J. Bacteriol. 83, 736-737 (1962).
    • (1962) J. Bacteriol. , vol.83 , pp. 736-737
    • Eagon, R.G.1
  • 19
    • 0016355739 scopus 로고
    • Vibrio parahaemolyticus and Vibrio alginolyticus: Short generation-time marine bacteria
    • Ulitzur, S. Vibrio parahaemolyticus and Vibrio alginolyticus: short generation-time marine bacteria. Microb. Ecol. 1, 127-135 (1974).
    • (1974) Microb. Ecol. , vol.1 , pp. 127-135
    • Ulitzur, S.1
  • 20
    • 83755166448 scopus 로고    scopus 로고
    • MetaPath: Identifying differentially abundant metabolic pathways in metagenomic datasets
    • Liu, B. & Pop, M. MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC Proc. 5, S9 (2011).
    • (2011) BMC Proc. , vol.5
    • Liu, B.1    Pop, M.2
  • 21
    • 83755185513 scopus 로고    scopus 로고
    • Experimental and analytical tools for studying the human microbiome
    • Kuczynski, J. et al. Experimental and analytical tools for studying the human microbiome. Nat. Rev. Genet. 13, 47-58 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 47-58
    • Kuczynski, J.1
  • 22
    • 84860488672 scopus 로고    scopus 로고
    • Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
    • Teeling, H. et al. Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336, 608-611 (2012).
    • (2012) Science , vol.336 , pp. 608-611
    • Teeling, H.1
  • 23
    • 0029070337 scopus 로고
    • Flow cytometric analysis of activated sludge with rRNA-targeted probes
    • Wallner, G., Erhart, R. & Amann, R. Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl. Environ. Microbiol. 61, 1859-1866 (1995).
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1859-1866
    • Wallner, G.1    Erhart, R.2    Amann, R.3
  • 24
    • 48749098610 scopus 로고    scopus 로고
    • Fixation procedures for flow cytometric analysis of environmental bacteria
    • Günther, S. et al. Fixation procedures for flow cytometric analysis of environmental bacteria. J. Microbiol. Methods 75, 127-134 (2008).
    • (2008) J. Microbiol. Methods , vol.75 , pp. 127-134
    • Günther, S.1
  • 25
    • 80052744267 scopus 로고    scopus 로고
    • Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis
    • Springer
    • Bombach, P. et al. Resolution of natural microbial community dynamics by community fingerprinting, flow cytometry, and trend interpretation analysis. In Adv. in Biochem. Eng. Biotechnol. 124, 151-181 Springer, (2011).
    • (2011) Adv. in Biochem. Eng. Biotechnol. , vol.124 , pp. 151-181
    • Bombach, P.1
  • 26
    • 84855199947 scopus 로고    scopus 로고
    • R Development Core Team. R, R Foundation for Statistical Computing
    • R Development Core Team. R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2011).
    • (2011) A Language and Environment for Statistical Computing
  • 27
    • 23044456673 scopus 로고    scopus 로고
    • Population profiles of a stable, commensalistic bacterial culture grown with toluene under sulphate-reducing conditions
    • DOI 10.1002/cyto.a.20158
    • Vogt, C., Lösche, A., Kleinsteuber, S. & Müller, S. Population profiles of a stable, commensalistic bacterial culture grown with toluene under sulphate-reducing conditions. Cytometry A 66A, 91-102 (2005). (Pubitemid 41076853)
    • (2005) Cytometry Part A , vol.66 , Issue.2 , pp. 91-102
    • Vogt, G.1    Losche, A.2    Kleinsteuber, S.3    Muller, S.4
  • 28
    • 63849216934 scopus 로고    scopus 로고
    • Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′,6′-diamidino-2- phenylindole) and tetracycline labeling
    • Günther, S. et al. Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′,6′-diamidino-2-phenylindole) and tetracycline labeling. Appl. Environ. Microbiol. 75, 2111-2121 (2009).
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2111-2121
    • Günther, S.1
  • 29
    • 33847158078 scopus 로고    scopus 로고
    • Pearson versus Spearman, Kendall's Tau correlation analysis on structure-activity relationships of biologic active compounds
    • Bolboaca, S.D. & Jäntschi, L. Pearson versus Spearman, Kendall's Tau correlation analysis on structure-activity relationships of biologic active compounds. Leonardo J. Sci. 9, 179-200 (2006).
    • (2006) Leonardo J. Sci. , vol.9 , pp. 179-200
    • Bolboaca, S.D.1    Jäntschi, L.2
  • 30
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • DOI 10.1111/j.1574-6941.2007.00375.x
    • Ramette, A. Multivariate analyses in microbial ecology. FEMS Microbiol. Ecol. 62, 142-160 (2007). (Pubitemid 47610610)
    • (2007) FEMS Microbiology Ecology , vol.62 , Issue.2 , pp. 142-160
    • Ramette, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.