-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
2
-
-
77954920576
-
Transcriptional profiling of rapidly growing cucumber fruit by 454-pyrosequencing analysis
-
Ando K, Grumet R (2010) Transcriptional profiling of rapidly growing cucumber fruit by 454-pyrosequencing analysis. J Amer Soc Hort Sci 135: 291-302.
-
(2010)
J Amer Soc Hort Sci
, vol.135
, pp. 291-302
-
-
Ando, K.1
Grumet, R.2
-
3
-
-
14644430438
-
Drought and salt tolerance in plants
-
Bartels D, Sunkar R (2005) Drought and salt tolerance in plants. Crit Rev Plant Sci 24: 23-58.
-
(2005)
Crit Rev Plant Sci
, vol.24
, pp. 23-58
-
-
Bartels, D.1
Sunkar, R.2
-
4
-
-
0030498675
-
Dehydrins: emergence of a biochemical role of a family of plant dehydration proteins
-
Close TJ (1996) Dehydrins: emergence of a biochemical role of a family of plant dehydration proteins. Physiol Plant 97: 795-803.
-
(1996)
Physiol Plant
, vol.97
, pp. 795-803
-
-
Close, T.J.1
-
5
-
-
33745089873
-
An atlas of gene expression from seed to seed through barley development
-
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R (2006) An atlas of gene expression from seed to seed through barley development. Funct Integr Genom 6: 202-211.
-
(2006)
Funct Integr Genom
, vol.6
, pp. 202-211
-
-
Druka, A.1
Muehlbauer, G.2
Druka, I.3
Caldo, R.4
Baumann, U.5
Rostoks, N.6
Schreiber, A.7
Wise, R.8
Close, T.9
Kleinhofs, A.10
Graner, A.11
Schulman, A.12
Langridge, P.13
Sato, K.14
Hayes, P.15
McNicol, J.16
Marshall, D.17
Waugh, R.18
-
6
-
-
77954299992
-
agriGO: a GO analysis toolkit for the agricultural community
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38(Suppl 2): w64-w70.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL. 2
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
7
-
-
56449123983
-
-
Food and Agriculture Organisation of the United Nations
-
Food and Agriculture Organisation of the United Nations (2005) Management of irrigation-induced salt-affected soils ftp://ftp. fao. org/agl/agll/docs/salinity_brochure_eng. pdf.
-
(2005)
Management of irrigation-induced salt-affected soils
-
-
-
8
-
-
34548331730
-
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
-
Forrest KL, Bhave M (2007) Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype. Funct Integr Genom 7: 263-289.
-
(2007)
Funct Integr Genom
, vol.7
, pp. 263-289
-
-
Forrest, K.L.1
Bhave, M.2
-
9
-
-
79951828683
-
De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification
-
Garg R, Patel RK, Tyagi AK, Jain M (2011) De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res 18: 53-63.
-
(2011)
DNA Res
, vol.18
, pp. 53-63
-
-
Garg, R.1
Patel, R.K.2
Tyagi, A.K.3
Jain, M.4
-
12
-
-
33644993373
-
Involvement of a cell wall-associated kinase, WAKL4, in Arabidopsis mineral responses
-
Hou X, Tong H, Selby J, Dewitt J, Peng X, He ZH (2005) Involvement of a cell wall-associated kinase, WAKL4, in Arabidopsis mineral responses. Plant Physiol 139: 1704-1716.
-
(2005)
Plant Physiol
, vol.139
, pp. 1704-1716
-
-
Hou, X.1
Tong, H.2
Selby, J.3
Dewitt, J.4
Peng, X.5
He, Z.H.6
-
13
-
-
84870265846
-
A physical, genetic and functional sequence assembly of the barley genome
-
International Barley Genome Sequencing Consortium
-
International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 29: 711-716.
-
(2012)
Nature
, vol.29
, pp. 711-716
-
-
Mayer, K.F.1
Waugh, R.2
Brown, J.W.3
Schulman, A.4
Langridge, P.5
Platzer, M.6
Fincher, G.B.7
Muehlbauer, G.J.8
Sato, K.9
Close, T.J.10
Wise, R.P.11
Stein, N.12
-
14
-
-
45449118694
-
Genome-wide analysis for identification of salt-responsive genes in common wheat
-
Kawaura K, Mochida K, Ogihara Y (2008) Genome-wide analysis for identification of salt-responsive genes in common wheat. Funct Integr Genom 8: 277-286.
-
(2008)
Funct Integr Genom
, vol.8
, pp. 277-286
-
-
Kawaura, K.1
Mochida, K.2
Ogihara, Y.3
-
16
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinforma 25: 1754-1760.
-
(2009)
Bioinforma
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
17
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools. Bioinforma 25: 2078-2079.
-
(2009)
Bioinforma
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
18
-
-
70449111713
-
A maize early responsive to dehydration gene, ZmERD4, provides enhanced drought and salt tolerance in Arabidopsis
-
Liu YH, Li HY, Shi YS, Song YC, Wang TY, Li Y (2009) A maize early responsive to dehydration gene, ZmERD4, provides enhanced drought and salt tolerance in Arabidopsis. Plant Mol Biol Rep 27: 542-548.
-
(2009)
Plant Mol Biol Rep
, vol.27
, pp. 542-548
-
-
Liu, Y.H.1
Li, H.Y.2
Shi, Y.S.3
Song, Y.C.4
Wang, T.Y.5
Li, Y.6
-
19
-
-
66149118939
-
Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes
-
Ma Q, Dai X, Xu Y, Guo J, Liu Y, Chen N, Xiao J, Zhang D, Xu Z, Zhang X, Chong K (2009) Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiol 150: 244-256.
-
(2009)
Plant Physiol
, vol.150
, pp. 244-256
-
-
Ma, Q.1
Dai, X.2
Xu, Y.3
Guo, J.4
Liu, Y.5
Chen, N.6
Xiao, J.7
Zhang, D.8
Xu, Z.9
Zhang, X.10
Chong, K.11
-
20
-
-
50649089207
-
RNAseq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y (2008) RNAseq: An assessment of technical reproducibility and comparison with gene expression arrays. Genom Res 18: 1509-1517.
-
(2008)
Genom Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
21
-
-
67651216183
-
Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs
-
Meiri D, Breiman A (2009) Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90. 1 and affecting the accumulation of HsfA2-regulated sHSPs. Plant J 59: 387-399.
-
(2009)
Plant J
, vol.59
, pp. 387-399
-
-
Meiri, D.1
Breiman, A.2
-
22
-
-
78649622430
-
Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L)
-
Mizuno H, Kawahara Y, Sakai H, Kanamori H, Wakimoto H, Yamagata H, Oono Y, Wu J, Ikawa H, Itoh T, Matsumoto T (2010) Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L). BMC Genom 11: 683-695.
-
(2010)
BMC Genom
, vol.11
, pp. 683-695
-
-
Mizuno, H.1
Kawahara, Y.2
Sakai, H.3
Kanamori, H.4
Wakimoto, H.5
Yamagata, H.6
Oono, Y.7
Wu, J.8
Ikawa, H.9
Itoh, T.10
Matsumoto, T.11
-
23
-
-
84878107683
-
-
Modra Seeds Fact Sheet, February 2011
-
Modra Seeds Fact Sheet, February 2011 http://www. modraseeds. com. au/pdf/Hindmarsh_Factsheet_Feb_2011. pdf.
-
-
-
-
24
-
-
34047223793
-
Transcriptional profiling of hexaploid wheat (Triticum aestivum L.) roots identifies novel, dehydration-responsive genes
-
Mohammadi M, Kav NNV, Deyholos MK (2007) Transcriptional profiling of hexaploid wheat (Triticum aestivum L.) roots identifies novel, dehydration-responsive genes. Plant, Cell Environ 30: 630-645.
-
(2007)
Plant, Cell Environ
, vol.30
, pp. 630-645
-
-
Mohammadi, M.1
Kav, N.N.V.2
Deyholos, M.K.3
-
25
-
-
25444461374
-
Genes and salt tolerance: bringing them together
-
Munns R (2005) Genes and salt tolerance: bringing them together. New Phytol 167: 645-663.
-
(2005)
New Phytol
, vol.167
, pp. 645-663
-
-
Munns, R.1
-
26
-
-
43149090878
-
Mechanisms of salinity tolerance
-
Munns R, Tester M (2008) Mechanisms of salinity tolerance. Ann Rev Plant Biol 59: 651-681.
-
(2008)
Ann Rev Plant Biol
, vol.59
, pp. 651-681
-
-
Munns, R.1
Tester, M.2
-
27
-
-
33645017818
-
World salinization with emphasis on Australia
-
Rengasamy P (2006) World salinization with emphasis on Australia. J Expt Bot 57: 1017-1023.
-
(2006)
J Expt Bot
, vol.57
, pp. 1017-1023
-
-
Rengasamy, P.1
-
28
-
-
68049095834
-
Comparative transcriptomics in the Triticeae
-
Schreiber AW, Sutton T, Caldo RA, Kalashyan E, Lovell B, Mayo G, Muehlbauer GJ, Druka A, Waugh R, Wise RP, Langridge P, Baumann U (2009) Comparative transcriptomics in the Triticeae. BMC Genom 10: 285-301.
-
(2009)
BMC Genom
, vol.10
, pp. 285-301
-
-
Schreiber, A.W.1
Sutton, T.2
Caldo, R.A.3
Kalashyan, E.4
Lovell, B.5
Mayo, G.6
Muehlbauer, G.J.7
Druka, A.8
Waugh, R.9
Wise, R.P.10
Langridge, P.11
Baumann, U.12
-
29
-
-
0036679053
-
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
-
Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 31: 279-292.
-
(2002)
Plant J
, vol.31
, pp. 279-292
-
-
Seki, M.1
Narusaka, M.2
Ishida, J.3
Nanjo, T.4
Fujita, M.5
Oono, Y.6
Kamiya, A.7
Nakajima, M.8
Enju, A.9
Sakurai, T.10
Satou, M.11
Akiyama, K.12
Taji, T.13
Yamaguchi-Shinozaki, K.14
Carninci, P.15
Kawai, J.16
Hayashizaki, Y.17
Shinozaki, K.18
-
30
-
-
33748350707
-
Drought-acclimation confers oxidative stress tolerance by inducing coordinated antioxidant defense at cellular and subcellular level in leaves of wheat seedlings
-
Selote DS, Khanna-Chopra R (2006) Drought-acclimation confers oxidative stress tolerance by inducing coordinated antioxidant defense at cellular and subcellular level in leaves of wheat seedlings. Physiol Plant 127: 494-506.
-
(2006)
Physiol Plant
, vol.127
, pp. 494-506
-
-
Selote, D.S.1
Khanna-Chopra, R.2
-
31
-
-
77955214742
-
RNA-Seq atlas of Glycine max: a guide to the soybean transcriptome
-
Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC (2010) RNA-Seq atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol 10: 160-175.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 160-175
-
-
Severin, A.J.1
Woody, J.L.2
Bolon, Y.T.3
Joseph, B.4
Diers, B.W.5
Farmer, A.D.6
Muehlbauer, G.J.7
Nelson, R.T.8
Grant, D.9
Specht, J.E.10
Graham, M.A.11
Cannon, S.B.12
May, G.D.13
Vance, C.P.14
Shoemaker, R.C.15
-
32
-
-
0031397805
-
Gene expression and signal transduction in water-stress response
-
Shinozaki K, Yamaguchi-Shinozaki K (1997) Gene expression and signal transduction in water-stress response. Plant Physiol 115: 327-334.
-
(1997)
Plant Physiol
, vol.115
, pp. 327-334
-
-
Shinozaki, K.1
Yamaguchi-Shinozaki, K.2
-
33
-
-
66449136667
-
ABySS: a parallel assembler for short read sequence data
-
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I (2009) ABySS: a parallel assembler for short read sequence data. Genome Res 19: 1117-1123.
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.5
Birol, I.6
-
34
-
-
7044264919
-
Differential expression of dehydrin genes in wild barley, Hordeum spontaneum, associated with resistance to water deficit
-
Suprunova T, Krugman T, Fahima T, Chen G, Shams I, Korol A, Nevo E (2004) Differential expression of dehydrin genes in wild barley, Hordeum spontaneum, associated with resistance to water deficit. Plant, Cell Environ 27: 1297-1308.
-
(2004)
Plant, Cell Environ
, vol.27
, pp. 1297-1308
-
-
Suprunova, T.1
Krugman, T.2
Fahima, T.3
Chen, G.4
Shams, I.5
Korol, A.6
Nevo, E.7
-
35
-
-
0036187202
-
Plant aquaporins: multifunctional water and solute channels with expanding roles
-
Tyerman SD, Niemietz CM, Bramley H (2002) Plant aquaporins: multifunctional water and solute channels with expanding roles. Plant, Cell Environ 25: 173-194.
-
(2002)
Plant, Cell Environ
, vol.25
, pp. 173-194
-
-
Tyerman, S.D.1
Niemietz, C.M.2
Bramley, H.3
-
36
-
-
5144227438
-
Osmotic stress in barley regulates expression of a different set of genes than salt stress does
-
Ueda A, Kathiresan A, Inada M, Narita Y, Nakamura T, Shi W, Takabe T, Bennett J (2004) Osmotic stress in barley regulates expression of a different set of genes than salt stress does. J Exp Bot 55: 2213-2218.
-
(2004)
J Exp Bot
, vol.55
, pp. 2213-2218
-
-
Ueda, A.1
Kathiresan, A.2
Inada, M.3
Narita, Y.4
Nakamura, T.5
Shi, W.6
Takabe, T.7
Bennett, J.8
-
37
-
-
77951687828
-
Omics' analyses of regulatory networks in plant abiotic stress responses
-
Urano K, Kurihara Y, Seki M, Shinozaki K (2010) 'Omics' analyses of regulatory networks in plant abiotic stress responses. Curr Opin Plant Biol 13: 132-138.
-
(2010)
Curr Opin Plant Biol
, vol.13
, pp. 132-138
-
-
Urano, K.1
Kurihara, Y.2
Seki, M.3
Shinozaki, K.4
-
38
-
-
33644533829
-
Expression analysis of barley (Hordeum vulgare L.) during salinity stress
-
Walia H, Wilson C, Wahid A, Condamine P, Cui X, Close TJ (2006) Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Funct Integr Genom 6: 143-156.
-
(2006)
Funct Integr Genom
, vol.6
, pp. 143-156
-
-
Walia, H.1
Wilson, C.2
Wahid, A.3
Condamine, P.4
Cui, X.5
Close, T.J.6
-
39
-
-
34247126574
-
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
-
Walia H, Wilson C, Condamine P, Ismail AM, Xu J, Cui XP, Close TJ (2007) Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise. BMC Genom 8: 87-100.
-
(2007)
BMC Genom
, vol.8
, pp. 87-100
-
-
Walia, H.1
Wilson, C.2
Condamine, P.3
Ismail, A.M.4
Xu, J.5
Cui, X.P.6
Close, T.J.7
-
40
-
-
0030021536
-
Expression of a late embryogenesis abundant protein gene, HVA1, from barley confers tolerance to water deficit and salt stress in transgenic rice
-
Xu D, Duan X, Wang B, Hong B, Ho T, Wu R (1996) Expression of a late embryogenesis abundant protein gene, HVA1, from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiol 110: 249-257.
-
(1996)
Plant Physiol
, vol.110
, pp. 249-257
-
-
Xu, D.1
Duan, X.2
Wang, B.3
Hong, B.4
Ho, T.5
Wu, R.6
-
41
-
-
36348982771
-
Isolation and molecular characterization of the Triticum aestivum L. ethylene-responsive factor1 (TaERF1) that increases multiple stress tolerance
-
Xu ZS, Xia LQ, Chen M, Cheng XG, Zhang RY, Li LC, Zhao YX, Lu Y, Ni ZY, Liu L, Qiu ZG, Ma YZ (2007) Isolation and molecular characterization of the Triticum aestivum L. ethylene-responsive factor1 (TaERF1) that increases multiple stress tolerance. Plant Mol Biol 65: 719-732.
-
(2007)
Plant Mol Biol
, vol.65
, pp. 719-732
-
-
Xu, Z.S.1
Xia, L.Q.2
Chen, M.3
Cheng, X.G.4
Zhang, R.Y.5
Li, L.C.6
Zhao, Y.X.7
Lu, Y.8
Ni, Z.Y.9
Liu, L.10
Qiu, Z.G.11
Ma, Y.Z.12
|