The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability

Rapid Communications in Mass Spectrometry

Volumn 27, Issue 12, 2013, Pages 1354-1358

  Walker, S Hunter ^a   Taylor, Amber D ^a   Muddiman, David C ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EFFICIENCY; ENZYME ACTIVITY; LIQUID CHROMATOGRAPHY; MAMMALS; MASS SPECTROMETRY; POLYSACCHARIDES;

CLEAVAGE EFFICIENCY; ENZYMATIC CLEAVAGE; GLYCANS; HORSE-RADISH PEROXIDASE; INTERNAL STANDARDS; MALTOHEPTAOSE; N-LINKED GLYCANS; QUANTITATIVE EXPERIMENTS; RELATIVE QUANTIFICATION; SAMPLE PREPARATION;

GLYCOPROTEINS;

EID: 84878072513     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.6579     Document Type: Article

References (27)

1. R. Apweiler, H. Hermjakob, N. Sharon,. On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. BBA-Gen. Subjects 1999, 1473, 4.
2. Encylopedia of Chemical Biology, vol. 2, (Ed:, T. P. Begley,). John Wiley, Hoboken, New Jersey, 2009, p. 785.
3. Essentials of Glycobiology, (2nd edn.), (Eds:, A. Varki, R. D. Cummings, J. D. Esko, H. H. Freeze, P. Stanley, C. R. Bertozzi, G. W. Hart, M. E. Etzler,). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 2009.
4. S. H. Walker, J. Budhathoki-Uprety, B. M. Novak, D. C. Muddiman,. Stable-isotope labeled hydrophobic hydrazide reagents for the relative quantification of N-linked glycans by electrospray ionization mass spectrometry. Anal. Chem. 2011, 83, 6738.
5. 3I. Glycobiology 2007, 677.
6. J. A. Atwood, L. Cheng, G. Alvarez-Manilla, N. L. Warren, W. S. York, R. Orlando,. Quantitation by isobaric labeling: Applications to glycomics. J. Proteome Res. 2008, 367.
7. P. Kang, Y. Mechref, Z. Kyselova, J. A. Goetz, M. V. Novotny,. Comparative glycomic mapping through quantitative permethylation and stable-isotope labeling. Anal. Chem. 2007, 6064.
8. M. J. Bowman, J. Zaia,. Comparative glycomics using a tetraplex stable-isotope coded tag. Anal. Chem. 2010, 82, 3023.
9. M. J. Bowman, J. Zaia,. Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry. Anal. Chem. 2007, 79, 5777.
10. B. Y. Xia, C. L. Feasley, G. P. Sachdev, D. F. Smith, R. D. Cummings,. Glycan reductive isotope labeling for quantitative glycomics. Anal. Biochem. 2009, 387, 162.
11. R. Orlando, J. M. Lim, J. A. Atwood, P. M. Angel, M. Fang, K. Aoki, G. Alvarez-Manilla, K. W. Moremen, W. S. York, M. Tiemeyer, M. Pierce, S. Dalton, L. Wells,. IDAWG: Metabolic incorporation of stable isotope labels for quantitative glycomics of cultured cells. J. Proteome Res. 2009, 3816.
12. H. Hahne, P. Neubert, K. Kuhn, C. Etienne, R. Bomgarden, J. C. Rogers, B. Kuster,. Carbonyl-reactive tandem mass tags for the proteome-wide quantification of N-linked glycans. Anal. Chem. 2012, 84, 3716.
13. P. Zhang, Y. Zhang, X. D. Xue, C. J. Wang, Z. F. Wang, L. J. Huang,. Relative quantitation of glycans using stable isotopic labels 1-(d0/d5) phenyl-3-methyl-5-pyrazolone by mass spectrometry. Anal. Biochem. 2011, 418, 1.
14. R. B. Dixon, M. S. Bereman, J. N. Petitte, A. M. Hawkridge, D. C. Muddiman,. One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma. Int. J. Mass Spectrom. 2011, 305, 79.
15. M. S. Bereman, D. C. Muddiman,. The effects of abundant plasma protein depletion on global glycan profiling using NanoLC FT-ICR mass spectrometry. Anal. Bioanal. Chem. 2010, 396, 1473.
16. M. S. Bereman, D. D. Young, A. Deiters, D. C. Muddiman,. Development of a robust and high throughput method for profiling N-linked glycans derived from plasma glycoproteins by nanoLC-FTICR mass spectrometry. J. Proteome Res. 2009, 8, 3764.
17. M. L. A. de Leoz, L. J. T. Young, H. J. An, S. R. Kronewitter, J. H. Kim, S. Miyamoto, A. D. Borowsky, H. K. Chew, C. B. Lebrilla,. High-mannose glycans are elevated during breast cancer progression. Mol. Cell. Proteomics 2011, 10, 1.
18. S. I. Snovida, H. Perreault,. A 2,5-dihydroxybenzoic acid/N,N- dimethylaniline matrix for the analysis of oligosaccharides by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun. Mass Spectrom. 2007, 21, 3711.
19. K. Kaneshiro, M. Watanabe, K. Terasawa, H. Uchimura, Y. Fukuyama, S. Iwamoto, T. A. Sato, K. Shimizu, G. Tsujimoto, K. Tanaka,. Rapid quantitative profiling of N-glycan by the glycan-labeling method using 3-aminoquinoline/ alpha-cyano-4-hydroxycinnamic acid. Anal. Chem. 2012, 84, 7146.
20. J. P. Kamerling,. Xylose-containing carbohydrate chains derived from N-glycoproteins. Pure Appl. Chem. 1991, 63, 465.
21. M. Wuhrer, C. H. Hokke, A. M. Deelder,. Glycopeptide analysis by matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry reveals novel features of horseradish peroxidase glycosylation. Rapid Commun. Mass Spectrom. 2004, 18, 1741.
22. B. S. Lee, S. Krisnanchettiar, S. S. Lateef, N. S. Lateef, S. Gupta,. Oligosaccharide analyses of glycopeptides of horseradish peroxidase by thermal-assisted partial acid hydrolysis and mass spectrometry. Carbohydrate Res. 2005, 340, 1859.
23. K. Matsuo,. Small-scale, high-throughput method for plant N-glycan preparation for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis. Anal. Biochem. 2011, 413, 200.
24. S. H. Walker, B. C. Carlisle, D. C. Muddiman,. Systematic comparison of reverse phase and hydrophilic interaction liquid chromatography platforms for the analysis of N-linked glycans. Anal. Chem. 2012, 84, 8198.
25. S. H. Walker, L. M. Lilley, M. F. Enamorado, D. L. Comins, D. C. Muddiman,. Hydrophobic derivatization of N-linked glycans for increased ion abundance in electrospray ionization mass spectrometry. J. Am. Soc. Mass Spectrom. 2011, 22, 1309.
26. S. H. Walker, B. N. Papas, D. L. Comins, D. C. Muddiman,. Interplay of permanent charge and hydrophobicity in the electrospray ionization of glycans. Anal. Chem. 2010, 82, 6636.
27. G. L. Andrews, C. M. Shuford, J. C. Burnett, A. M. Hawkridge, D. C. Muddiman,. Coupling of a vented column with splitless nanoRPLC-ESI-MS for the improved separation and detection of brain natriuretic peptide-32 and its proteolytic peptides. J. Chromatogr. B 2009, 877, 948.