Comparative analysis of 4C-Seq data generated from enzyme-based and sonication-based methods

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Gao, Fan ^a   Wei, Zong ^a   Lu, Wange ^a   Wang, Kai ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

4C Seq; Bioinformatics; Circular chromosome conformation capture; Next generation sequencing; Sonication

Indexed keywords

HISTONE; KRUPPEL LIKE FACTOR 4; OCTAMER TRANSCRIPTION FACTOR 4; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ESRRB; TRANSCRIPTION FACTOR TCFCP2I1; TRANSCRIPTION FACTOR ZFX; UNCLASSIFIED DRUG;

ANALYZER; ANIMAL CELL; ARTICLE; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME INTERACTION; CHROMOSOMES AND CHROMOSOMAL PHENOMENA; CORRELATION ANALYSIS; EMBRYO; EMBRYONIC STEM CELL; ENHANCER REGION; ENZYME ANALYSIS; GENE; INTERMETHOD COMPARISON; MOUSE; NONHUMAN; PLURIPOTENT STEM CELL; POLYMERASE CHAIN REACTION; POU5F1 GENE; PROTEIN BINDING; PROTEIN INTERACTION; SEQUENCE ANALYSIS; STATISTICAL MODEL; ULTRASOUND;

ANIMALS; CHROMOSOMES, MAMMALIAN; COMPUTATIONAL BIOLOGY; EMBRYONIC STEM CELLS; ENHANCER ELEMENTS, GENETIC; EPIGENESIS, GENETIC; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HISTONES; MICE; OCTAMER TRANSCRIPTION FACTOR-3; REPRODUCIBILITY OF RESULTS; RESTRICTION MAPPING; SONICATION; TRANSCRIPTION FACTORS;

EID: 84878007112     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-345     Document Type: Article

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