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Volumn 20, Issue 3, 2013, Pages 309-317

Virus-ECC-mPLoc: A multi-label predictor for predicting the subcellular localization of virus proteins with both single and multiple sites based on a general form of chou's pseudo amino acid composition

Author keywords

Classifier chain; Multi label learning; Multiplex proteins; Protein subcellular localization

Indexed keywords

VIRUS PROTEIN;

EID: 84877965051     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/0929866511320030009     Document Type: Article
Times cited : (42)

References (81)
  • 1
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • Shen, H.B.; Chou, K.C. Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers, 2007, 85(3), 233-240.
    • (2007) Biopolymers , vol.85 , Issue.3 , pp. 233-240
    • Shen, H.B.1    Chou, K.C.2
  • 2
    • 3242877807 scopus 로고    scopus 로고
    • ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
    • Web Server
    • Bhasin, M.; Raghava, G.P.S. ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST. Nucleic Acids Res., 2004, 32(Web Server), W414-W419.
    • (2004) Nucleic Acids Res , vol.32
    • Bhasin, M.1    Raghava, G.P.S.2
  • 3
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou, K.C.; Cai, Y.D. Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem., 2002, 277(48), 45765-45769.
    • (2002) J. Biol. Chem , vol.277 , Issue.48 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 4
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • Chou, K.C.; Elrod, D.W. Protein subcellular location prediction. Protein Eng., 1999, 12(2), 107-118.
    • (1999) Protein Eng , vol.12 , Issue.2 , pp. 107-118
    • Chou, K.C.1    Elrod, D.W.2
  • 5
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • Chou, K.C.; Shen, H.B. Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun., 2006, 347(1), 150-157.
    • (2006) Biochem. Biophys. Res. Commun , vol.347 , Issue.1 , pp. 150-157
    • Chou, K.C.1    Shen, H.B.2
  • 6
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized Evidence-Theoretic K-Nearest neighbor classifiers
    • Chou, K.C.; Shen, H.B. Predicting eukaryotic protein subcellular location by fusing optimized Evidence-Theoretic K-Nearest neighbor classifiers. J. Proteome Res., 2006, 5(8), 1888-1897.
    • (2006) J. Proteome Res , vol.5 , Issue.8 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 7
    • 33748944288 scopus 로고    scopus 로고
    • Predicting protein subcellular location by fusing multiple classifiers
    • Chou, K.C.; Shen, H.B. Predicting protein subcellular location by fusing multiple classifiers. J. Cell. Biochem., 2006, 99(2), 517-527.
    • (2006) J. Cell. Biochem , vol.99 , Issue.2 , pp. 517-527
    • Chou, K.C.1    Shen, H.B.2
  • 8
    • 33846605183 scopus 로고    scopus 로고
    • Largescale plant protein subcellular location prediction
    • Chou, K.C.; Shen, H.B. Largescale plant protein subcellular location prediction. J. Cell. Biochem., 2007, 100(3), 665-678.
    • (2007) J. Cell. Biochem , vol.100 , Issue.3 , pp. 665-678
    • Chou, K.C.1    Shen, H.B.2
  • 9
    • 17644389617 scopus 로고    scopus 로고
    • Support vector machinebased method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search
    • Garg, A.; Bhasin, M.; Raghava, G.P.S. Support vector machinebased method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J. Biol. Chem., 2005, 280(15), 14427-14432.
    • (2005) J. Biol. Chem , vol.280 , Issue.15 , pp. 14427-14432
    • Garg, A.1    Bhasin, M.2    Raghava, G.P.S.3
  • 10
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • Hua, S.; Sun, Z. Support vector machine approach for protein subcellular localization prediction. Bioinformatics, 2001, 17(8), 721-728.
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 721-728
    • Hua, S.1    Sun, Z.2
  • 11
    • 0347093598 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations using fuzzy k-NN method
    • Huang, Y.; Li, Y. Prediction of protein subcellular locations using fuzzy k-NN method. Bioinformatics, 2004, 20(1), 21-28.
    • (2004) Bioinformatics , vol.20 , Issue.1 , pp. 21-28
    • Huang, Y.1    Li, Y.2
  • 13
    • 46049083380 scopus 로고    scopus 로고
    • Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins
    • Niu, B.; Jin, Y.H.; Feng, K.Y.; Lu, W.C.; Cai, Y.D.; Li, G.Z. Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins. Mol. Divers., 2008, 12(1), 41-45.
    • (2008) Mol. Divers , vol.12 , Issue.1 , pp. 41-45
    • Niu, B.1    Jin, Y.H.2    Feng, K.Y.3    Lu, W.C.4    Cai, Y.D.5    Li, G.Z.6
  • 14
    • 0141515750 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs
    • Park, K.J.; Kanehisa, M. Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics, 2003, 19(13), 1656-1663.
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1656-1663
    • Park, K.J.1    Kanehisa, M.2
  • 16
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt, A.; Hubbard, T. Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Res., 1998, 26(9), 2230-2236.
    • (1998) Nucleic Acids Res , vol.26 , Issue.9 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 17
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of gram-positive bacterial proteins
    • Shen, H.B.; Chou, K.C. Gpos-PLoc: an ensemble classifier for predicting subcellular localization of gram-positive bacterial proteins. Protein Eng. Des. Sel., 2007, 20(1), 39-46.
    • (2007) Protein Eng. Des. Sel , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.B.1    Chou, K.C.2
  • 18
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • Shen, H.B.; Chou, K.C. Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers, 2007, 85(3), 233-240.
    • (2007) Biopolymers , vol.85 , Issue.3 , pp. 233-240
    • Shen, H.B.1    Chou, K.C.2
  • 19
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • Shen, H.B.; Yang, J.; Chou, K.C. Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids, 2007, 33(1), 57-67.
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 57-67
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 20
    • 25444491937 scopus 로고    scopus 로고
    • Protein subcellular localization prediction for gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines
    • Wang, J.; Sung, W.K.; Krishnan, A.; Li, K.B. Protein subcellular localization prediction for gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines. BMC Bioinformatics, 2005, 6(1), 174.
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 174
    • Wang, J.1    Sung, W.K.2    Krishnan, A.3    Li, K.B.4
  • 21
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for gram-negative bacteria by support vector machines based on n-peptide compositions
    • Yu, C.S.; Lin, C.J.; Hwang, J.K. Predicting subcellular localization of proteins for gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Sci., 2004, 13(5), 1402-1406.
    • (2004) Protein Sci , vol.13 , Issue.5 , pp. 1402-1406
    • Yu, C.S.1    Lin, C.J.2    Hwang, J.K.3
  • 22
    • 33845760114 scopus 로고    scopus 로고
    • Automated subcellular location determination and High-Throughput microscopy
    • Glory, E.; Murphy, R.F. Automated subcellular location determination and High-Throughput microscopy. Developmental Cell, 2007, 12(1), 7-16.
    • (2007) Developmental Cell , vol.12 , Issue.1 , pp. 7-16
    • Glory, E.1    Murphy, R.F.2
  • 23
    • 70349254021 scopus 로고    scopus 로고
    • Exploring the Function-Location nexus: Using multiple lines of evidence in defining the subcellular location of plant proteins
    • Millar, A.H.; Carrie, C.; Pogson, B.; Whelan, J. Exploring the Function-Location nexus: Using multiple lines of evidence in defining the subcellular location of plant proteins. Plant Cell, 2009, 21(6), 1625-1631.
    • (2009) Plant Cell , vol.21 , Issue.6 , pp. 1625-1631
    • Millar, A.H.1    Carrie, C.2    Pogson, B.3    Whelan, J.4
  • 24
    • 79959667141 scopus 로고    scopus 로고
    • ILoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
    • Xiao, X.; Wu, Z.C.; Chou, K.C. iLoc-Virus: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites. J. Theor. Biol., 2011, 284(1), 42-51.
    • (2011) J. Theor. Biol , vol.284 , Issue.1 , pp. 42-51
    • Xiao, X.1    Wu, Z.C.2    Chou, K.C.3
  • 25
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition
    • Chou, K.C. Some remarks on protein attribute prediction and pseudo amino acid composition. J. Theor. Biol., 2011, 273(1), 236-247.
    • (2011) J. Theor. Biol , vol.273 , Issue.1 , pp. 236-247
    • Chou, K.C.1
  • 26
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • Chou, K.C.; Shen, H.B. Recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370(1), 1-16.
    • (2007) Anal. Biochem , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 27
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for Large- Scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • Chou, K.C.; Shen, H.B. Euk-mPLoc: a fusion classifier for Large- Scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res., 2007, 6(5), 1728-1734.
    • (2007) J. Proteome Res , vol.6 , Issue.5 , pp. 1728-1734
    • Chou, K.C.1    Shen, H.B.2
  • 28
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • Shen, H.B.; Chou, K.C. Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem. Biophys. Res. Commun., 2007, 355(4), 1006-1011.
    • (2007) Biochem. Biophys. Res. Commun , vol.355 , Issue.4 , pp. 1006-1011
    • Shen, H.B.1    Chou, K.C.2
  • 29
    • 77957297596 scopus 로고    scopus 로고
    • Virus-mPLoc: A fusion classifier for viral protein subcellular location prediction by incorporating multiple sites
    • Shen, H.B.; Chou, K.C. Virus-mPLoc: a fusion classifier for viral protein subcellular location prediction by incorporating multiple sites. J. Biomol. Struct. Dyn., 2010, 28(2), 175-186.
    • (2010) J. Biomol. Struct. Dyn , vol.28 , Issue.2 , pp. 175-186
    • Shen, H.B.1    Chou, K.C.2
  • 30
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudoamino acid composition
    • Chou, K.C. Prediction of protein cellular attributes using pseudoamino acid composition. Proteins, 2001, 43(3), 246-255.
    • (2001) Proteins , vol.43 , Issue.3 , pp. 246-255
    • Chou, K.C.1
  • 31
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou, K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21(1), 10-19.
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 10-19
    • Chou, K.C.1
  • 32
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou, K.C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteomics, 2009, 6(4), 262-274.
    • (2009) Curr. Proteomics , vol.6 , Issue.4 , pp. 262-274
    • Chou, K.C.1
  • 33
    • 84856475734 scopus 로고    scopus 로고
    • Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of chou's pseudo amino acid composition and on evolutionary information
    • Nanni, L.; Lumini, A.; Gupta, D.; Garg, A. Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of chou's pseudo amino acid composition and on evolutionary information. IEEE/ACM Trans. Comput. Biol. Bioinformatics, 2012, 9(2), 467-475.
    • (2012) IEEE/ACM Trans. Comput. Biol. Bioinformatics , vol.9 , Issue.2 , pp. 467-475
    • Nanni, L.1    Lumini, A.2    Gupta, D.3    Garg, A.4
  • 34
    • 83655165809 scopus 로고    scopus 로고
    • OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into chou's pseudo amino acid composition
    • Qiu, J.D.; Suo, S.B.; Sun, X.Y.; Shi, S.P.; Liang, R.P. OligoPred: a web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into chou's pseudo amino acid composition. J. Mol. Graph. Mod., 2011, 30, 129-134.
    • (2011) J. Mol. Graph. Mod , vol.30 , pp. 129-134
    • Qiu, J.D.1    Suo, S.B.2    Sun, X.Y.3    Shi, S.P.4    Liang, R.P.5
  • 35
    • 61549096128 scopus 로고    scopus 로고
    • Prediction of protein secondary structure content by using the concept of chou's pseudo amino acid composition and support vector machine
    • Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16(1), 27-31.
    • (2009) Protein Pept. Lett , vol.16 , Issue.1 , pp. 27-31
    • Chen, C.1    Chen, L.2    Zou, X.3    Cai, P.4
  • 36
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using chou's pseudo amino acid composition
    • Zou, D.; He, Z.; He, J.; Xia, Y. Supersecondary structure prediction using chou's pseudo amino acid composition. J. Comput. Chem., 2011, 32(2), 271-278.
    • (2011) J. Comput. Chem , vol.32 , Issue.2 , pp. 271-278
    • Zou, D.1    He, Z.2    He, J.3    Xia, Y.4
  • 37
    • 67650739405 scopus 로고    scopus 로고
    • Prediction of protein structural classes by chou's pseudo amino acid composition: Approached using continuous wavelet transform and principal component analysis
    • Li, Z.C.; Zhou, X.B.; Dai, Z.; Zou, X.Y. Prediction of protein structural classes by chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis. Amino Acids, 2009, 37(2), 415-425.
    • (2009) Amino Acids , vol.37 , Issue.2 , pp. 415-425
    • Li, Z.C.1    Zhou, X.B.2    Dai, Z.3    Zou, X.Y.4
  • 38
    • 78649324596 scopus 로고    scopus 로고
    • A novel feature representation method based on chou's pseudo amino acid composition for protein structural class prediction
    • Sahu, S.S.; Panda, G. A novel feature representation method based on chou's pseudo amino acid composition for protein structural class prediction. Comput. Biol. Chem., 2010, 34(5-6), 320-327.
    • (2010) Comput. Biol. Chem , vol.34 , Issue.5-6 , pp. 320-327
    • Sahu, S.S.1    Panda, G.2
  • 39
    • 50949129207 scopus 로고    scopus 로고
    • Using chou's pseudo amino acid composition to predict protein quaternary structure: A sequence-segmented PseAAC approach
    • Zhang, S.W.; Chen, W.; Yang, F.; Pan, Q. Using chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach. Amino Acids, 2008, 35(3), 591-598.
    • (2008) Amino Acids , vol.35 , Issue.3 , pp. 591-598
    • Zhang, S.W.1    Chen, W.2    Yang, F.3    Pan, Q.4
  • 40
    • 77955964484 scopus 로고    scopus 로고
    • Using the concept of chou's pseudo amino acid composition to predict enzyme family classes: An approach with support vector machine based on discrete wavelet transform
    • Qiu, J.D.; Huang, J.H.; Shi, S.P.; Liang, R.P. Using the concept of chou's pseudo amino acid composition to predict enzyme family classes: An approach with support vector machine based on discrete wavelet transform. Protein Pept. Lett., 2010, 17(6), 715-722.
    • (2010) Protein Pept. Lett , vol.17 , Issue.6 , pp. 715-722
    • Qiu, J.D.1    Huang, J.H.2    Shi, S.P.3    Liang, R.P.4
  • 41
    • 78650649704 scopus 로고    scopus 로고
    • Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature
    • Wang, Y.C.; Wang, X.B.; Yang, Z.X.; Deng, N.Y. Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature. Protein Pept. Lett., 2010, 17(11), 1441-1449.
    • (2010) Protein Pept. Lett , vol.17 , Issue.11 , pp. 1441-1449
    • Wang, Y.C.1    Wang, X.B.2    Yang, Z.X.3    Deng, N.Y.4
  • 42
    • 34548439881 scopus 로고    scopus 로고
    • Using chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou, X.B.; Chen, C.; Li, Z.C.; Zou, X.Y. Using chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol., 2007, 248(3), 546-551.
    • (2007) J. Theor. Biol , vol.248 , Issue.3 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 43
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using chou's pseudo amino acid composition and improved hybrid approach
    • Li, F.M.; Li, Q.Z. Predicting protein subcellular location using chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett., 2008, 15(6), 612-616.
    • (2008) Protein Pept. Lett , vol.15 , Issue.6 , pp. 612-616
    • Li, F.M.1    Li, Q.Z.2
  • 44
    • 48649105466 scopus 로고    scopus 로고
    • Using chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
    • Ding, Y.S.; Zhang, T.L. Using chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier. Pattern Recognit. Lett., 2008, 29(13), 1887-1892.
    • (2008) Pattern Recognit. Lett , vol.29 , Issue.13 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 45
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
    • Jian, X.; Wei, R.; Zhan, T.; Gu, Q. Using the concept of chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy. Protein Pept. Lett., 2008, 15(4), 392-396.
    • (2008) Protein Pept. Lett , vol.15 , Issue.4 , pp. 392-396
    • Jian, X.1    Wei, R.2    Zhan, T.3    Gu, Q.4
  • 46
    • 78650673337 scopus 로고    scopus 로고
    • Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition
    • Kandaswamy, K.K.; Pugalenthi, G.; Moller, S.; Hartmann, E.; Kalies, K.U.; Suganthan, P.N.; Martinetz, T. Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition. Protein Pept. Lett., 2010, 17(12), 1473-1479.
    • (2010) Protein Pept. Lett , vol.17 , Issue.12 , pp. 1473-1479
    • Kandaswamy, K.K.1    Pugalenthi, G.2    Moller, S.3    Hartmann, E.4    Kalies, K.U.5    Suganthan, P.N.6    Martinetz, T.7
  • 47
    • 70350437815 scopus 로고    scopus 로고
    • Prediction of subcellular localization of apoptosis protein using chous pseudo amino acid composition
    • Lin, H.; Wang, H.; Ding, H.; Chen, Y.L.; Li, Q.Z. Prediction of subcellular localization of apoptosis protein using chous pseudo amino acid composition. Acta biotheoretica, 2009, 57(3), 321-330.
    • (2009) Acta Biotheoretica , vol.57 , Issue.3 , pp. 321-330
    • Lin, H.1    Wang, H.2    Ding, H.3    Chen, Y.L.4    Li, Q.Z.5
  • 48
    • 43149099231 scopus 로고    scopus 로고
    • Using chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location
    • Jiang, X.; Wei, R.; Zhao, Y.; Zhang, T. Using chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location. Amino Acids, 2008, 34(4), 669-675.
    • (2008) Amino Acids , vol.34 , Issue.4 , pp. 669-675
    • Jiang, X.1    Wei, R.2    Zhao, Y.3    Zhang, T.4
  • 49
    • 43149097851 scopus 로고    scopus 로고
    • Genetic programming for creating chou's pseudo amino acid based features for submitochondria localization
    • Nanni, L.; Lumini, A. Genetic programming for creating chou's pseudo amino acid based features for submitochondria localization. Amino Acids, 2008, 34(4), 653-660.
    • (2008) Amino Acids , vol.34 , Issue.4 , pp. 653-660
    • Nanni, L.1    Lumini, A.2
  • 50
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng, Y.H.; Guo, Y.Z.; Xiao, R.Q.; Yang, L.; Yu, L.Z.; Li, M.L. Using the augmented chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol., 2009, 259(2), 366-372.
    • (2009) J. Theor. Biol , vol.259 , Issue.2 , pp. 366-372
    • Zeng, Y.H.1    Guo, Y.Z.2    Xiao, R.Q.3    Yang, L.4    Yu, L.Z.5    Li, M.L.6
  • 51
    • 65349165718 scopus 로고    scopus 로고
    • Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition
    • Ding, H.; Luo, L.; Lin, H. Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett., 2009, 16(4), 351-355.
    • (2009) Protein Pept. Lett , vol.16 , Issue.4 , pp. 351-355
    • Ding, H.1    Luo, L.2    Lin, H.3
  • 52
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili, M.; Mohabatkar, H.; Mohsenzadeh, S. Using the concept of chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol., 2010, 263(2), 203-209.
    • (2010) J. Theor. Biol , vol.263 , Issue.2 , pp. 203-209
    • Esmaeili, M.1    Mohabatkar, H.2    Mohsenzadeh, S.3
  • 53
    • 38149007012 scopus 로고    scopus 로고
    • Predicting DNA-binding proteins: Approached from chou's pseudo amino acid composition and other specific sequence features
    • Fang, Y.; Guo, Y.; Feng, Y.; Li, M. Predicting DNA-binding proteins: approached from chou's pseudo amino acid composition and other specific sequence features. Amino Acids, 2008, 34(1), 103-109.
    • (2008) Amino Acids , vol.34 , Issue.1 , pp. 103-109
    • Fang, Y.1    Guo, Y.2    Feng, Y.3    Li, M.4
  • 54
    • 77951992931 scopus 로고    scopus 로고
    • Prediction of G-Protein-Coupled receptor classes in low homology using chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns
    • Gu, Q.; Ding, Y.S.; Zhang, T.L. Prediction of G-Protein-Coupled receptor classes in low homology using chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns. Protein Pept. Lett., 2010, 17(5), 559-567.
    • (2010) Protein Pept. Lett , vol.17 , Issue.5 , pp. 559-567
    • Gu, Q.1    Ding, Y.S.2    Zhang, T.L.3
  • 55
    • 65649105512 scopus 로고    scopus 로고
    • Prediction of gprotein- coupled receptor classes based on the concept of chou's pseudo amino acid composition: An approach from discrete wavelet transform
    • Qiu, J.D.; Huang, J.H.; Liang, R.P.; Lu, X.Q. Prediction of gprotein- coupled receptor classes based on the concept of chou's pseudo amino acid composition: An approach from discrete wavelet transform. Anal. Biochem., 2009, 390(1), 68-73.
    • (2009) Anal. Biochem , vol.390 , Issue.1 , pp. 68-73
    • Qiu, J.D.1    Huang, J.H.2    Liang, R.P.3    Lu, X.Q.4
  • 56
    • 79953735805 scopus 로고    scopus 로고
    • Predicting protein folding rates using the concept of chou's pseudo amino acid composition
    • Guo, J.; Rao, N.; Liu, G.; Yang, Y.; Wang, G. Predicting protein folding rates using the concept of chou's pseudo amino acid composition. J. Comput. Chem., 2011, 32(8), 1612-1617.
    • (2011) J. Comput. Chem , vol.32 , Issue.8 , pp. 1612-1617
    • Guo, J.1    Rao, N.2    Liu, G.3    Yang, Y.4    Wang, G.5
  • 57
    • 42749090472 scopus 로고    scopus 로고
    • The modified mahalanobis discriminant for predicting outer membrane proteins by using chou's pseudo amino acid composition
    • Hao, L. The modified mahalanobis discriminant for predicting outer membrane proteins by using chou's pseudo amino acid composition. J. Theor. Biol., 2008, 252(2), 350-356.
    • (2008) J. Theor. Biol , vol.252 , Issue.2 , pp. 350-356
    • Hao, L.1
  • 58
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using chou's pseudo amino acid composition
    • Mohabatkar, H. Prediction of cyclin proteins using chou's pseudo amino acid composition. Protein Pept. Lett., 2010, 17(10), 1207-1214.
    • (2010) Protein Pept. Lett , vol.17 , Issue.10 , pp. 1207-1214
    • Mohabatkar, H.1
  • 59
    • 79955564229 scopus 로고    scopus 로고
    • Prediction of GABAA receptor proteins using the concept of chou's pseudo-amino acid composition and support vector machine
    • Mohabatkar, H.; Beigi, M.M.; Esmaeili, A. Prediction of GABAA receptor proteins using the concept of chou's pseudo-amino acid composition and support vector machine. J. Theor. Biol., 2011, 281(1), 18-23.
    • (2011) J. Theor. Biol , vol.281 , Issue.1 , pp. 18-23
    • Mohabatkar, H.1    Beigi, M.M.2    Esmaeili, A.3
  • 60
    • 77955668989 scopus 로고    scopus 로고
    • Secret P: Identifying bacterial secreted proteins by fusing new features into chou's pseudo amino acid composition
    • Yu, L.; Guo, Y.; Li, Y.; Li, G.; Li, M.; Luo, J.; Xiong, W.; Qin, W. SecretP: identifying bacterial secreted proteins by fusing new features into chou's pseudo amino acid composition. J. Theor. Biol., 2010, 267(1), 1-6.
    • (2010) J. Theor. Biol , vol.267 , Issue.1 , pp. 1-6
    • Yu, L.1    Guo, Y.2    Li, Y.3    Li, G.4    Li, M.5    Luo, J.6    Xiong, W.7    Qin, W.8
  • 61
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and chou's amphiphilic pseudo-amino acid composition
    • Zhang, G.Y.; Fang, B.S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and chou's amphiphilic pseudo-amino acid composition. J. Theor. Biol., 2008, 253(2), 310-315.
    • (2008) J. Theor. Biol , vol.253 , Issue.2 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 62
    • 54249139729 scopus 로고    scopus 로고
    • Predicting lipase types by improved chou's Pseudo-Amino acid composition
    • Zhang, G.Y.; Li, H.C.; Gao, J.Q.; Fang, B.S. Predicting lipase types by improved chou's Pseudo-Amino acid composition. Protein Pept. Lett., 2008, 15(10), 1132-1137.
    • (2008) Protein Pept. Lett , vol.15 , Issue.10 , pp. 1132-1137
    • Zhang, G.Y.1    Li, H.C.2    Gao, J.Q.3    Fang, B.S.4
  • 63
    • 79953323878 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protease families by incorporating a series of protein biological features
    • Hu, L.; Zheng, L.; Wang, Z.; Li, B.; Liu, L. Using pseudo amino acid composition to predict protease families by incorporating a series of protein biological features. Protein Pept. Lett., 2011, 18(6), 552-558.
    • (2011) Protein Pept. Lett , vol.18 , Issue.6 , pp. 552-558
    • Hu, L.1    Zheng, L.2    Wang, Z.3    Li, B.4    Liu, L.5
  • 64
    • 78751550064 scopus 로고    scopus 로고
    • Identify golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition
    • Ding, H.; Liu, L.; Guo, F.B.; Huang, J.; Lin, H. Identify golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition. Protein Pept. Lett., 2011, 18(1), 58-63.
    • (2011) Protein Pept. Lett , vol.18 , Issue.1 , pp. 58-63
    • Ding, H.1    Liu, L.2    Guo, F.B.3    Huang, J.4    Lin, H.5
  • 65
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to chou's pseudo amino acid composition
    • Georgiou, D.; Karakasidis, T.; Nieto, J.; Torres, A. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to chou's pseudo amino acid composition. J. Theor. Biol., 2009, 257(1), 17-26.
    • (2009) J. Theor. Biol , vol.257 , Issue.1 , pp. 17-26
    • Georgiou, D.1    Karakasidis, T.2    Nieto, J.3    Torres, A.4
  • 66
    • 77953298113 scopus 로고    scopus 로고
    • A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
    • Chou, K.C.; Shen, H.B. A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS ONE, 2010, 5(4), e9931.
    • (2010) PLoS ONE , vol.5 , Issue.4
    • Chou, K.C.1    Shen, H.B.2
  • 67
    • 77956199192 scopus 로고    scopus 로고
    • Plant-mPLoc: A Top-Down strategy to augment the power for predicting plant protein subcellular localization
    • Chou, K.C.; Shen, H.B. Plant-mPLoc: a Top-Down strategy to augment the power for predicting plant protein subcellular localization. PLoS ONE, 2010, 5(6), e11335.
    • (2010) PLoS ONE , vol.5 , Issue.6
    • Chou, K.C.1    Shen, H.B.2
  • 68
    • 79953316878 scopus 로고    scopus 로고
    • ILoc-Euk: A Multi-Label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
    • Chou, K.C.; Wu, Z.C.; Xiao, X. iLoc-Euk: a Multi-Label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS ONE, 2011, 6(3), e18258.
    • (2011) PLoS ONE , vol.6 , Issue.3
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 69
    • 79959741759 scopus 로고    scopus 로고
    • CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition
    • Khan, A.; Majid, A.; Hayat, M. CE-PLoc: an ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition. Comput. Biol. Chem., 2011, 35(4), 218-229.
    • (2011) Comput. Biol. Chem , vol.35 , Issue.4 , pp. 218-229
    • Khan, A.1    Majid, A.2    Hayat, M.3
  • 70
    • 73549106100 scopus 로고    scopus 로고
    • Gpos-mPLoc: A top-down approach to improve the quality of predicting subcellular localization of grampositive bacterial proteins
    • Shen, H.B.; Chou, K.C. Gpos-mPLoc: a top-down approach to improve the quality of predicting subcellular localization of grampositive bacterial proteins. Protein Pept. Lett., 2009, 16(12), 1478-1484.
    • (2009) Protein Pept. Lett , vol.16 , Issue.12 , pp. 1478-1484
    • Shen, H.B.1    Chou, K.C.2
  • 71
    • 69949101944 scopus 로고    scopus 로고
    • A top-down approach to enhance the power of predicting human protein subcellular localization: HummPLoc 2.0
    • Shen, H.B.; Chou, K.C. A top-down approach to enhance the power of predicting human protein subcellular localization: HummPLoc 2.0. Anal. Biochem., 2009, 394(2), 269-274.
    • (2009) Anal. Biochem , vol.394 , Issue.2 , pp. 269-274
    • Shen, H.B.1    Chou, K.C.2
  • 72
    • 77951652612 scopus 로고    scopus 로고
    • Gneg-mPLoc: A top-down strategy to enhance the quality of predicting subcellular localization of gramnegative bacterial proteins
    • Shen, H.B.; Chou, K.C. Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of gramnegative bacterial proteins. J. Theor. Biol., 2010, 264(2), 326-333.
    • (2010) J. Theor. Biol , vol.264 , Issue.2 , pp. 326-333
    • Shen, H.B.1    Chou, K.C.2
  • 73
    • 79959282135 scopus 로고    scopus 로고
    • A Multi-Label classifier for predicting the subcellular localization of Gram-Negative bacterial proteins with both single and multiple sites
    • Xiao, X.; Wu, Z.C.; Chou, K.C. A Multi-Label classifier for predicting the subcellular localization of Gram-Negative bacterial proteins with both single and multiple sites. PLoS ONE, 2011, 6(6), e20592.
    • (2011) PLoS ONE , vol.6 , Issue.6
    • Xiao, X.1    Wu, Z.C.2    Chou, K.C.3
  • 75
    • 39449105071 scopus 로고    scopus 로고
    • Cell-PLoc: A package of web servers for predicting subcellular localization of proteins in various organisms
    • Chou, K.C.; Shen, H.B. Cell-PLoc: a package of web servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc., 2008, 3(2), 153-162.
    • (2008) Nat. Protoc , vol.3 , Issue.2 , pp. 153-162
    • Chou, K.C.1    Shen, H.B.2
  • 76
    • 0035878724 scopus 로고    scopus 로고
    • Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
    • Schffer, A.A.; Aravind, L.; Madden, T.L.; Shavirin, S.; Spouge, J.L.; Wolf, Y.I.; Koonin, E.V.; Altschul, S.F. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res., 2001, 29(14), 2994-3005.
    • (2001) Nucleic Acids Res , vol.29 , Issue.14 , pp. 2994-3005
    • Schffer, A.A.1    Aravind, L.2    Madden, T.L.3    Shavirin, S.4    Spouge, J.L.5    Wolf, Y.I.6    Koonin, E.V.7    Altschul, S.F.8
  • 78
    • 70349968175 scopus 로고    scopus 로고
    • Classifier chains for multi-label classification
    • Read, J.; Pfahringer, B.; Holmes, G.; Frank, E. Classifier chains for multi-label classification. Proc. ECML, 2009, 254-269.
    • (2009) Proc. ECML , pp. 254-269
    • Read, J.1    Pfahringer, B.2    Holmes, G.3    Frank, E.4
  • 80
    • 0029157083 scopus 로고
    • Prediction of protein structural classes
    • Chou, K.C.; Zhang, C.T. Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30(4), 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol , vol.30 , Issue.4 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 81
    • 77649339280 scopus 로고    scopus 로고
    • Recent advances in developing webservers for predicting protein attributes
    • Chou, K.C.; Shen, H.B. Recent advances in developing webservers for predicting protein attributes. Nat. Sci., 2009, 1(2), 63-92.
    • (2009) Nat. Sci , vol.1 , Issue.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2


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