-
1
-
-
84866369183
-
Evaluation of rapid influenza diagnostic tests for influenza A (H3N2)v virus and updated case count-United States, 2012
-
CDC
-
CDC (2012). Evaluation of rapid influenza diagnostic tests for influenza A (H3N2)v virus and updated case count-United States, 2012. MMWR Recomm Rep 61, 619-621.
-
(2012)
MMWR Recomm Rep
, vol.61
, pp. 619-621
-
-
-
2
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
Delport, W., Poon, A. F., Frost, S. D. & Kosakovsky Pond, S. L. (2010). Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26, 2455-2457.
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.2
Frost, S.D.3
Kosakovsky Pond, S.L.4
-
3
-
-
80052151455
-
Multiple reassortment between pandemic (H1N1) 2009 and endemic influenza viruses in pigs, United States
-
Ducatez, M. F., Hause, B., Stigger-Rosser, E., Darnell, D., Corzo, C., Juleen, K., Simonson, R., Brockwell-Staats, C., Rubrum, A. & other authors (2011). Multiple reassortment between pandemic (H1N1) 2009 and endemic influenza viruses in pigs, United States. Emerg Infect Dis 17, 1624-1629.
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 1624-1629
-
-
Ducatez, M.F.1
Hause, B.2
Stigger-Rosser, E.3
Darnell, D.4
Corzo, C.5
Juleen, K.6
Simonson, R.7
Brockwell-Staats, C.8
Rubrum, A.9
-
4
-
-
67650407532
-
Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans
-
Garten, R. J., Davis, C. T., Russell, C. A., Shu, B., Lindstrom, S., Balish, A., Sessions, W. M., Xu, X., Skepner, E. & other authors (2009). Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans. Science 325, 197-201.
-
(2009)
Science
, vol.325
, pp. 197-201
-
-
Garten, R.J.1
Davis, C.T.2
Russell, C.A.3
Shu, B.4
Lindstrom, S.5
Balish, A.6
Sessions, W.M.7
Xu, X.8
Skepner, E.9
-
5
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
6
-
-
84859497701
-
The role of receptor binding specificity in interspecies transmission of influenza viruses
-
Imai, M. & Kawaoka, Y. (2012). The role of receptor binding specificity in interspecies transmission of influenza viruses. Curr Opin Virol 2, 160-167.
-
(2012)
Curr Opin Virol
, vol.2
, pp. 160-167
-
-
Imai, M.1
Kawaoka, Y.2
-
7
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond, S. L. & Frost, S. D. (2005). Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22, 1208-1222.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.2
-
8
-
-
80052331252
-
Genetic characterization of swine influenza viruses (H3N2) isolated from Minnesota in 2006-2007
-
Kumar, S. R., Deflube, L., Biswas, M., Shobana, R. & Elankumaran, S. (2011). Genetic characterization of swine influenza viruses (H3N2) isolated from Minnesota in 2006-2007. Virus Genes 43, 161-176.
-
(2011)
Virus Genes
, vol.43
, pp. 161-176
-
-
Kumar, S.R.1
Deflube, L.2
Biswas, M.3
Shobana, R.4
Elankumaran, S.5
-
9
-
-
84861998642
-
Phylodynamics of H5N1 avian influenza virus in Indonesia
-
Lam, T. T., Hon, C. C., Lemey, P., Pybus, O. G., Shi, M., Tun, H. M., Li, J., Jiang, J., Holmes, E. C. & Leung, F. C. (2012). Phylodynamics of H5N1 avian influenza virus in Indonesia. Mol Ecol 21, 3062-3077.
-
(2012)
Mol Ecol
, vol.21
, pp. 3062-3077
-
-
Lam, T.T.1
Hon, C.C.2
Lemey, P.3
Pybus, O.G.4
Shi, M.5
Tun, H.M.6
Li, J.7
Jiang, J.8
Holmes, E.C.9
Leung, F.C.10
-
10
-
-
81255179945
-
Antigenic and genetic evolution of equine influenza A (H3N8) virus from 1968 to 2007
-
Lewis, N. S., Daly, J. M., Russell, C. A., Horton, D. L., Skepner, E., Bryant, N. A., Burke, D. F., Rash, A. S., Wood, J. L. & other authors (2011). Antigenic and genetic evolution of equine influenza A (H3N8) virus from 1968 to 2007. J Virol 85, 12742-12749.
-
(2011)
J Virol
, vol.85
, pp. 12742-12749
-
-
Lewis, N.S.1
Daly, J.M.2
Russell, C.A.3
Horton, D.L.4
Skepner, E.5
Bryant, N.A.6
Burke, D.F.7
Rash, A.S.8
Wood, J.L.9
-
11
-
-
84859808770
-
Human infections with novel reassortant influenza A(H3N2)v viruses, United States, 2011
-
Lindstrom, S., Garten, R., Balish, A., Shu, B., Emery, S., Berman, L., Barnes, N., Sleeman, K., Gubareva, L. & other authors (2012). Human infections with novel reassortant influenza A(H3N2)v viruses, United States, 2011. Emerg Infect Dis 18, 834-837.
-
(2012)
Emerg Infect Dis
, vol.18
, pp. 834-837
-
-
Lindstrom, S.1
Garten, R.2
Balish, A.3
Shu, B.4
Emery, S.5
Berman, L.6
Barnes, N.7
Sleeman, K.8
Gubareva, L.9
-
12
-
-
77249118657
-
One-step real-time RT-PCR for pandemic influenza A virus (H1N1) 2009 matrix gene detection in swine samples
-
Lorusso, A., Faaberg, K. S., Killian, M. L., Koster, L. & Vincent, A. L. (2010). One-step real-time RT-PCR for pandemic influenza A virus (H1N1) 2009 matrix gene detection in swine samples. J Virol Methods 164, 83-87.
-
(2010)
J Virol Methods
, vol.164
, pp. 83-87
-
-
Lorusso, A.1
Faaberg, K.S.2
Killian, M.L.3
Koster, L.4
Vincent, A.L.5
-
13
-
-
79952622203
-
Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008
-
Lorusso, A., Vincent, A. L., Harland, M. L., Alt, D., Bayles, D. O., Swenson, S. L., Gramer, M. R., Russell, C. A., Smith, D. J. & other authors (2011). Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. J Gen Virol 92, 919-930.
-
(2011)
J Gen Virol
, vol.92
, pp. 919-930
-
-
Lorusso, A.1
Vincent, A.L.2
Harland, M.L.3
Alt, D.4
Bayles, D.O.5
Swenson, S.L.6
Gramer, M.R.7
Russell, C.A.8
Smith, D.J.9
-
14
-
-
84893081196
-
Contemporary epidemiology of North American lineage triple reassortant Influenza A viruses in pigs
-
Lorusso, A., Vincent, A. L., Gramer, M. R., Lager, K. M. & Ciacci-Zanella, J. R. (2012). Contemporary epidemiology of North American lineage triple reassortant Influenza A viruses in pigs. Curr Top Microbiol Immunol 370, 113-131.
-
(2012)
Curr Top Microbiol Immunol
, vol.370
, pp. 113-131
-
-
Lorusso, A.1
Vincent, A.L.2
Gramer, M.R.3
Lager, K.M.4
Ciacci-Zanella, J.R.5
-
15
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
Murrell, B., Wertheim, J. O., Moola, S., Weighill, T., Scheffler, K. & Kosakovsky Pond, S. L. (2012). Detecting individual sites subject to episodic diversifying selection. PLoS Genet 8, e1002764.
-
(2012)
PLoS Genet
, vol.8
-
-
Murrell, B.1
Wertheim, J.O.2
Moola, S.3
Weighill, T.4
Scheffler, K.5
Kosakovsky Pond, S.L.6
-
16
-
-
84866342594
-
Global transmission of influenza viruses from humans to swine
-
Nelson, M. I., Gramer, M. R., Vincent, A. L. & Holmes, E. C. (2012a). Global transmission of influenza viruses from humans to swine. J Gen Virol 93, 2195-2203.
-
(2012)
J Gen Virol
, vol.93
, pp. 2195-2203
-
-
Nelson, M.I.1
Gramer, M.R.2
Vincent, A.L.3
Holmes, E.C.4
-
17
-
-
84865101803
-
Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011
-
Nelson, M. I., Vincent, A. L., Kitikoon, P., Holmes, E. C. & Gramer, M. R. (2012b). Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011. J Virol 86, 8872-8878.
-
(2012)
J Virol
, vol.86
, pp. 8872-8878
-
-
Nelson, M.I.1
Vincent, A.L.2
Kitikoon, P.3
Holmes, E.C.4
Gramer, M.R.5
-
18
-
-
33745961315
-
Triple reassortant H3N2 influenza A viruses, Canada, 2005
-
Olsen, C. W., Karasin, A. I., Carman, S., Li, Y., Bastien, N., Ojkic, D., Alves, D., Charbonneau, G., Henning, B. M. & other authors (2006). Triple reassortant H3N2 influenza A viruses, Canada, 2005. Emerg Infect Dis 12, 1132-1135.
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 1132-1135
-
-
Olsen, C.W.1
Karasin, A.I.2
Carman, S.3
Li, Y.4
Bastien, N.5
Ojkic, D.6
Alves, D.7
Charbonneau, G.8
Henning, B.M.9
-
19
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
Pond, S. L., Frost, S. D. & Muse, S. V. (2005). HyPhy: hypothesis testing using phylogenies. Bioinformatics 21, 676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
20
-
-
0003626439
-
-
Department of Zoology, University of Oxford, Oxford, UK
-
Rambaut, A. (2002). Sequence Alignment Editor, version 2.0. Distributed by author. Department of Zoology, University of Oxford, Oxford, UK.
-
(2002)
Sequence Alignment Editor, version 2.0. Distributed by author
-
-
Rambaut, A.1
-
21
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
Smith, D. J., Lapedes, A. S., de Jong, J. C., Bestebroer, T. M., Rimmelzwaan, G. F., Osterhaus, A. D. & Fouchier, R. A. (2004). Mapping the antigenic and genetic evolution of influenza virus. Science 305, 371-376.
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
Lapedes, A.S.2
de Jong, J.C.3
Bestebroer, T.M.4
Rimmelzwaan, G.F.5
Osterhaus, A.D.6
Fouchier, R.A.7
-
23
-
-
79957602568
-
Long-term evolution and transmission dynamics of swine influenza A virus
-
Vijaykrishna, D., Smith, G. J., Pybus, O. G., Zhu, H., Bhatt, S., Poon, L. L., Riley, S., Bahl, J., Ma, S. K. & other authors (2011). Long-term evolution and transmission dynamics of swine influenza A virus. Nature 473, 519-522.
-
(2011)
Nature
, vol.473
, pp. 519-522
-
-
Vijaykrishna, D.1
Smith, G.J.2
Pybus, O.G.3
Zhu, H.4
Bhatt, S.5
Poon, L.L.6
Riley, S.7
Bahl, J.8
Ma, S.K.9
-
24
-
-
0033850375
-
Evolution of swine H3N2 influenza viruses in the United States
-
Webby, R. J., Swenson, S. L., Krauss, S. L., Gerrish, P. J., Goyal, S. M. & Webster, R. G. (2000). Evolution of swine H3N2 influenza viruses in the United States. J Virol 74, 8243-8251.
-
(2000)
J Virol
, vol.74
, pp. 8243-8251
-
-
Webby, R.J.1
Swenson, S.L.2
Krauss, S.L.3
Gerrish, P.J.4
Goyal, S.M.5
Webster, R.G.6
-
25
-
-
0344118228
-
Genetic reassortment of avian, swine, and human influenza A viruses in American pigs
-
Zhou, N. N., Senne, D. A., Landgraf, J. S., Swenson, S. L., Erickson, G., Rossow, K., Liu, L., Yoon, Kj., Krauss, S. & Webster, R. G. (1999). Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J Virol 73, 8851-8856.
-
(1999)
J Virol
, vol.73
, pp. 8851-8856
-
-
Zhou, N.N.1
Senne, D.A.2
Landgraf, J.S.3
Swenson, S.L.4
Erickson, G.5
Rossow, K.6
Liu, L.7
Yoon, K.8
Krauss, S.9
Webster, R.G.10
|