Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011

Journal of Virology

Volumn 86, Issue 16, 2012, Pages 8872-8878

  Nelson, Martha I ^a   Vincent, Amy L ^b   Kitikoon, Pravina ^b   Holmes, Edward C ^a,c   Gramer, Marie R ^d  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b NATIONAL ANIMAL DISEASE CENTER   (United States)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETIC REASSORTMENT; GENETIC VARIABILITY; HUMAN; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H1N2; INFLUENZA VIRUS A H3N2; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SWINE; VIRUS GENE; VIRUS ISOLATION; VIRUS TRANSMISSION;

ANIMALS; EVOLUTION, MOLECULAR; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; NEURAMINIDASE; NORTH AMERICA; ORTHOMYXOVIRIDAE INFECTIONS; REASSORTANT VIRUSES; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES; VIRAL MATRIX PROTEINS; VIRAL PROTEINS;

EID: 84865101803     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00259-12     Document Type: Article

References (39)

1. Bao Y, et al. 2008. The influenza virus resource at the National Center for Biotechnology Information. J. Virol. 82:596-601.
2. Cappuccio JA, et al. 2011. Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs. J. Gen. Virol. 92:2871-2878.
3. Centers for Disease Control and Prevention. 2012. Update: influenza A (H3N2)v transmission and guidelines-five states, 2011. MMWR Morb. Mortal. Wkly. Rep. 60:1741-1744.
4. Centers for Disease Control and Prevention. 2011. Swine-origin influenza A (H3N2) virus infection in two children-Indiana and Pennsylvania, July-August 2011. MMWR Morb. Mortal. Wkly. Rep. 60:1213-1215.
5. Centers for Disease Control and Prevention. 2011. Limited human-tohuman transmission of novel influenza A (H3N2) virus-Iowa, November 2011. MMWR Morb. Mortal. Wkly. Rep. 60:1615-1617.
6. Centers for Disease Control and Prevention. 2009. Swine influenza A (H1N1) infection in two children-Southern California, March-April 2009. MMWR Morb. Mortal. Wkly. Rep. 58:400-402.
7. Centers for Disease Control and Prevention. 2004. Preliminary assessment of the effectiveness of the 2003-04 inactivated influenza vaccine- Colorado, December 2003. MMWR Morb. Mortal. Wkly. Rep. 53:8-11.
8. Chou YY, et al. 2011. The M segment of the 2009 new pandemic H1N1 influenza virus is critical for its high transmission efficiency in the guinea pig model. J. Virol. 85:11235-11241.
9. Ducatez MF, et al. 2011. Multiple reassortment between pandemic (H1N1) 2009 and endemic influenza viruses in pigs, United States. Emerg. Infect. Dis. 17:1624-1629.
10. Fan X, et al. 2012. Emergence and dissemination of a swine H3N2 reassortant with 2009 pandemic H1N1 genes in pigs in China. J. Virol. 86: 2375-2378.
11. Garten RJ, et al. 2009. Antigenic and genetic characteristics of swineorigin 2009 A(H1N1) influenza viruses circulating in humans. Science 325:197-201.
12. Guindon S, et al. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59:301-321.
13. Holmes EC, et al. 2005. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol. 3:e300. doi:10.1371/journal.pbio.0030300.
14. Holyoake PK, et al. 2011. The first identified case of pandemic H1N1 influenza in pigs in Australia. Aust. Vet. J. 89:427-431.
15. Howard WA, Essen SC, Strugnell BW, Russell C, Barass L, Reid SM, Brown IH. 2011. Reassortant Pandemic (H1N1) 2009 virus in pigs, United Kingdom. Emerg. Infect. Dis. 17:1049-1052.
16. Howden KH, et al. 2009. An investigation into human pandemic influenza virus (H1N1) 2009 on an Alberta swine farm. Can. Vet. J. 50:1153-1161.
17. Karasin AI, et al. 2002. Genetic characterization of H1N2 influenza A viruses isolated from pigs throughout the United States. J. Clin. Microbiol. 40:1073-1079.
18. Karasin AI, Carman S, Olsen CW. 2006. Identification of human H1N2 and human-swine reassortant H1N2 and H1N1 influenza A viruses among pigs in Ontario, Canada (2003 to 2005). J. Clin. Microbiol. 44: 1123-1126.
19. Kitikoon P, et al. 2010. Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 virus isolated in 2010-2011. J. Virol. 86:6804-6814.
20. Lakdawala SS, et al. 2011. Eurasian-origin gene segments contribute to the transmissibility, aerosol release, and morphology of the 2009 pandemic H1N1 influenza virus. PLoS Pathog. 7:e1002443. doi:10.1371/ journal.ppat.1002443.
21. Lam TT, et al. 2011. Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic. J. Virol. 85:10279-10285.
22. Liu Q, et al. 2011. Emergence of novel reassortant H3N2 swine influenza viruses with the 2009 pandemic H1N1 genes in the United States. Arch. Virol. 157:555-562.
23. Lorusso A, et al. 2011. Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. J. Gen. Virol. 92: 919-930.
24. McBride W, Key N. 2003. Economic and structural relationships in U.S. hog production. Economic Research Service, U.S. Department of Agriculture. http://www.ers.usda.gov/Publications/AER818/.
25. Nelson MI, et al. 2011. Spatial dynamics of human-origin H1 influenza A virus in North American swine. PLoS Pathog. 7:e1002077. doi:10.1371/ journal.ppat.1002077.
26. Njabo KY, et al. 2011. Pandemic A/H1N1/2009 influenza virus in swine, Cameroon, 2010. Vet. Microbiol. 156:189-192.
27. Olsen CW, et al. 2006. Triple reassortant H3N2 influenza A viruses, Canada, 2005. Emerg. Infect. Dis. 12:1132-1135.
28. Pappaioanou M, Gramer M. 2010. Lessons from pandemic H1N1 2009 to improve prevention, detection, and response to influenza pandemics from a One Health perspective. ILAR J. 51:268-280.
29. Pereda A, et al. 2010. Pandemic (H1N1) 2009 outbreak on a pig farm, Argentina. Emerg. Infect. Dis. 16:304-307.
30. Rambaut A. 2002. Sequence alignment editor, version 2.0. http://tree.bio .ed.ac.uk/software/seal/. Accessed 11 December 2011.
31. Shinde V, et al. 2009. Triple-reassortant swine influenza A (H1) in humans in the United States, 2005-2009. N. Engl. J. Med. 360:2616-2625.
32. Shu B, et al. 2012. Genetic analysis and antigenic characterization of swine origin influenza viruses isolated from humans in the United States, 1990-2010. Virology 422:151-160.
33. Smith GJ, et al. 2009. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459:1122-1125.
34. Tamura K, et al. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
35. Vijaykrishna D, et al. 2010. Reassortment of pandemic H1N1/2009 influenza A virus in swine. Science 328:1529.
36. Vincent AL, Ma W, Lager KM, Janke BH, Richt JA. 2008. Swine influenza viruses: a North American perspective. Adv. Virus Res. 72:127-154.
37. Vincent AL, et al. 2009. Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States. Virus Genes 39:176-185.
38. Zhou NN, et al. 1999. Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J. Virol. 73:8851-8856.
39. Zhu H, et al. 2011. Novel reassortment of Eurasian avian-like and pandemic/ 2009 influenza viruses in swine: infectious potential for humans. J. Virol. 85:10432-10439.