메뉴 건너뛰기




Volumn 55, Issue 3, 2013, Pages 267-277

Peakmatch: A simple and robust method for peak list matching

Author keywords

Automated assignment; CYANA; Peak alignment; Peak list; Spectrum referencing

Indexed keywords

ALGORITHM; ARTICLE; HETERONUCLEAR SINGLE QUANTUM COHERENCE; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PEAKMATCH; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN STRUCTURE;

EID: 84877926408     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-013-9708-z     Document Type: Article
Times cited : (7)

References (25)
  • 2
    • 4344648451 scopus 로고    scopus 로고
    • Automated analysis of protein NMR assignments and structures
    • 10.1021/cr030408p
    • Baran MC, Huang YJ, Moseley HNB, Montelione GT (2004) Automated analysis of protein NMR assignments and structures. Chem Rev 104:3541-3555
    • (2004) Chem Rev , vol.104 , pp. 3541-3555
    • Baran, M.C.1    Huang, Y.J.2    Moseley, H.N.B.3    Montelione, G.T.4
  • 3
    • 0343459675 scopus 로고
    • The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
    • 10.1007/BF00417486
    • Bartels C, Xia TH, Billeter M, Güntert P, Wüthrich K (1995) The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J Biomol NMR 6:1-10
    • (1995) J Biomol NMR , vol.6 , pp. 1-10
    • Bartels, C.1    Xia, T.H.2    Billeter, M.3    Güntert, P.4    Wüthrich, K.5
  • 4
    • 0000441606 scopus 로고    scopus 로고
    • GARANT - A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra
    • 10.1002/(SICI)1096-987X(19970115)18:1<139: AID-JCC13>3.0.CO;2-H
    • Bartels C, Güntert P, Billeter M, Wüthrich K (1997) GARANT - a general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J Comput Chem 18:139-149
    • (1997) J Comput Chem , vol.18 , pp. 139-149
    • Bartels, C.1    Güntert, P.2    Billeter, M.3    Wüthrich, K.4
  • 5
    • 35448950267 scopus 로고    scopus 로고
    • CheckShift: Automatic correction of inconsistent chemical shift referencing
    • 10.1007/s10858-007-9191-5
    • Ginzinger SW, Gerick F, Coles M, Heun V (2007) CheckShift: automatic correction of inconsistent chemical shift referencing. J Biomol NMR 39:223-227
    • (2007) J Biomol NMR , vol.39 , pp. 223-227
    • Ginzinger, S.W.1    Gerick, F.2    Coles, M.3    Heun, V.4
  • 6
    • 79960125660 scopus 로고    scopus 로고
    • Advances in automated NMR protein structure determination
    • 10.1017/S0033583510000326
    • Guerry P, Herrmann T (2011) Advances in automated NMR protein structure determination. Q Rev Biophys 44:257-309
    • (2011) Q Rev Biophys , vol.44 , pp. 257-309
    • Guerry, P.1    Herrmann, T.2
  • 7
    • 58849162221 scopus 로고    scopus 로고
    • Automated structure determination from NMR spectra
    • 10.1007/s00249-008-0367-z
    • Güntert P (2009) Automated structure determination from NMR spectra. Eur Biophys J 38:129-143
    • (2009) Eur Biophys J , vol.38 , pp. 129-143
    • Güntert, P.1
  • 8
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • 10.1006/jmbi.1997.1284
    • Güntert P, Mumenthaler C, Wüthrich K (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273:283-298
    • (1997) J Mol Biol , vol.273 , pp. 283-298
    • Güntert, P.1    Mumenthaler, C.2    Wüthrich, K.3
  • 9
    • 0036873589 scopus 로고    scopus 로고
    • Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS
    • 10.1023/A:1021614115432
    • Herrmann T, Güntert P, Wüthrich K (2002) Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J Biomol NMR 24:171-189
    • (2002) J Biomol NMR , vol.24 , pp. 171-189
    • Herrmann, T.1    Güntert, P.2    Wüthrich, K.3
  • 10
    • 68349105003 scopus 로고    scopus 로고
    • Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system
    • 10.1007/s10858-009-9339-6
    • Ikeya T, Takeda M, Yoshida H, Terauchi T, Jee J, Kainosho M, Güntert P (2009) Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system. J Biomol NMR 44:261-272
    • (2009) J Biomol NMR , vol.44 , pp. 261-272
    • Ikeya, T.1    Takeda, M.2    Yoshida, H.3    Terauchi, T.4    Jee, J.5    Kainosho, M.6    Güntert, P.7
  • 11
    • 4644259437 scopus 로고    scopus 로고
    • Using NMRView to visualize and analyze the NMR spectra of macromolecules
    • Johnson BA (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Meth Mol Biol 278:313-352
    • (2004) Meth Mol Biol , vol.278 , pp. 313-352
    • Johnson, B.A.1
  • 12
    • 77952430272 scopus 로고    scopus 로고
    • SAIL - Stereo-array isotope labeling
    • 10.1017/S0033583510000016
    • Kainosho M, Güntert P (2009) SAIL - stereo-array isotope labeling. Q Rev Biophys 42:247-300
    • (2009) Q Rev Biophys , vol.42 , pp. 247-300
    • Kainosho, M.1    Güntert, P.2
  • 13
    • 33644774471 scopus 로고    scopus 로고
    • Optimal isotope labelling for NMR protein structure determinations
    • 2006Natur.440.52K 10.1038/nature04525
    • Kainosho M, Torizawa T, Iwashita Y, Terauchi T, Ono AM, Güntert P (2006) Optimal isotope labelling for NMR protein structure determinations. Nature 440:52-57
    • (2006) Nature , vol.440 , pp. 52-57
    • Kainosho, M.1    Torizawa, T.2    Iwashita, Y.3    Terauchi, T.4    Ono, A.M.5    Güntert, P.6
  • 14
    • 33749524593 scopus 로고    scopus 로고
    • Automated protein structure determination from NMR spectra
    • 10.1021/ja061136l
    • López-Méndez B, Güntert P (2006) Automated protein structure determination from NMR spectra. J Am Chem Soc 128:13112-13122
    • (2006) J Am Chem Soc , vol.128 , pp. 13112-13122
    • López-Méndez, B.1    Güntert, P.2
  • 16
    • 0000238336 scopus 로고
    • A simplex method for function minimization
    • 0229.65053 10.1093/comjnl/7.4.308
    • Nelder JA, Mead R (1965) A simplex method for function minimization. Comput J 7:308-313
    • (1965) Comput J , vol.7 , pp. 308-313
    • Nelder, J.A.1    Mead, R.2
  • 19
    • 84864484147 scopus 로고    scopus 로고
    • A new algorithm for reliable and general NMR resonance assignment
    • 10.1021/ja305091n
    • Schmidt E, Güntert P (2012) A new algorithm for reliable and general NMR resonance assignment. J Am Chem Soc 134:12817-12829
    • (2012) J Am Chem Soc , vol.134 , pp. 12817-12829
    • Schmidt, E.1    Güntert, P.2
  • 20
    • 58149475991 scopus 로고    scopus 로고
    • Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm
    • 10.1007/s10858-008-9291-x
    • Schmucki R, Yokoyama S, Güntert P (2009) Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm. J Biomol NMR 43:97-109
    • (2009) J Biomol NMR , vol.43 , pp. 97-109
    • Schmucki, R.1    Yokoyama, S.2    Güntert, P.3
  • 23
    • 15844395840 scopus 로고    scopus 로고
    • 15N chemical shift assignments of proteins
    • 1087.65601 10.1007/s10858-004-7441-3
    • 15N chemical shift assignments of proteins. J Biomol NMR 31:143-148
    • (2005) J Biomol NMR , vol.31 , pp. 143-148
    • Wang, Y.J.1    Wishart, D.S.2
  • 24
    • 23144462958 scopus 로고    scopus 로고
    • Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications
    • 10.1007/s10858-005-1717-0
    • Wang LY, Eghbalnia HR, Bahrami A, Markley JL (2005) Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications. J Biomol NMR 32:13-22
    • (2005) J Biomol NMR , vol.32 , pp. 13-22
    • Wang, L.Y.1    Eghbalnia, H.R.2    Bahrami, A.3    Markley, J.L.4
  • 25
    • 61549100580 scopus 로고    scopus 로고
    • Automated protein structure calculation from NMR data
    • 10.1007/s10858-008-9295-6
    • Williamson MP, Craven CJ (2009) Automated protein structure calculation from NMR data. J Biomol NMR 43:131-143
    • (2009) J Biomol NMR , vol.43 , pp. 131-143
    • Williamson, M.P.1    Craven, C.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.