Developmental and Functional Expression of miRNA-Stability Related Genes in the Nervous System

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  de Sousa, Érica ^a   Walter, Lais Takata ^a   Higa, Guilherme Shigueto Vilar ^a,b   Casado, Otávio Augusto Nocera ^a   Kihara, Alexandre Hiroaki ^a,b  

^a UNIVERSIDADE FEDERAL DO ABC   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

3' 5' EXORIBONUCLEASE 2; CYCLIN D1; EYE PROTEIN; PROTEIN PAPD4; UNCLASSIFIED DRUG;

3' 5' EXORIBONUCLEASE 2 GENE; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; ASTROCYTE; CELL CYCLE M PHASE; CELL CYCLE S PHASE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; DARK ADAPTATION; DEVELOPMENTAL GENE; EMBRYO; ENDOTHELIUM CELL; GENE EXPRESSION REGULATION; GENE FUNCTION; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC STABILITY; LIGHT ADAPTATION; MICROGLIA; NERVE CELL DIFFERENTIATION; NEURAL STEM CELL; NONHUMAN; PAPD4 GENE; PROTEIN EXPRESSION; RAT; RETINA AMACRINE CELL; RETINA DEVELOPMENT; RETINA GANGLION CELL; RETINA NERVE CELL; UPREGULATION; VISUAL NERVOUS SYSTEM;

ADAPTATION, OCULAR; AMACRINE CELLS; ANIMALS; ASTROCYTES; CYCLIN D1; ENDOTHELIAL CELLS; EXORIBONUCLEASES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; LIGHT; MICRORNAS; NEUROGLIA; NITRIC OXIDE SYNTHASE TYPE III; RATS, LONG-EVANS; RETINA; RETINAL GANGLION CELLS; RNA STABILITY; STEM CELLS;

EID: 84877916798     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0056908     Document Type: Article

References (43)

1. Gao FB, (2008) Posttranscriptional control of neuronal development by microRNA networks. Trends Neurosci 31: 20-26.
2. Decembrini S, Bressan D, Vignali R, Pitto L, Mariotti S, et al. (2009) MicroRNAs couple cell fate and developmental timing in retina. Proc Natl Acad Sci U S A 106: 21179-21184.
3. Li Q, Bian S, Hong J, Kawase-Koga Y, Zhu E, et al. (2011) Timing specific requirement of microRNA function is essential for embryonic and postnatal hippocampal development. PLoS One 6: e26000.
4. Andersson T, Rahman S, Sansom SN, Alsio JM, Kaneda M, et al. (2010) Reversible block of mouse neural stem cell differentiation in the absence of dicer and microRNAs. PLoS One 5: e13453.
5. Zheng K, Li H, Zhu Y, Zhu Q, Qiu M, (2010) MicroRNAs are essential for the developmental switch from neurogenesis to gliogenesis in the developing spinal cord. J Neurosci 30: 8245-8250.
6. Krol J, Busskamp V, Markiewicz I, Stadler MB, Ribi S, et al. (2010) Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell 141: 618-631.
7. Bredy TW, Lin Q, Wei W, Baker-Andresen D, Mattick JS, (2011) MicroRNA regulation of neural plasticity and memory. Neurobiol Learn Mem 96: 89-94.
8. Konopka W, Schutz G, Kaczmarek L, (2011) The microRNA contribution to learning and memory. Neuroscientist 17: 468-474.
9. Ambros V, Lee RC, (2004) Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning. Methods Mol Biol 265: 131-158.
10. He L, Hannon GJ, (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
11. Thomson DW, Bracken CP, Goodall GJ, (2011) Experimental strategies for microRNA target identification. Nucleic Acids Res 39: 6845-6853.
12. Diederichs S, Haber DA, (2007) Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell 131: 1097-1108.
13. Koscianska E, Starega-Roslan J, Krzyzosiak WJ, (2011) The role of Dicer protein partners in the processing of microRNA precursors. PLoS One 6: e28548.
14. Bail S, Swerdel M, Liu H, Jiao X, Goff LA, et al. (2010) Differential regulation of microRNA stability. RNA 16: 1032-1039.
15. Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, et al. (2009) Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23: 433-438.
16. Kai ZS, Pasquinelli AE, (2010) MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat Struct Mol Biol 17: 5-10.
17. Kihara AH, Moriscot AS, Ferreira PJ, Hamassaki DE, (2005) Protecting RNA in fixed tissue: an alternative method for LCM users. J Neurosci Methods 148: 103-107.
18. Belmonte MA, Santos MF, Kihara AH, Yan CY, Hamassaki DE, (2006) Light-Induced photoreceptor degeneration in the mouse involves activation of the small GTPase Rac1. Invest Ophthalmol Vis Sci 47: 1193-1200.
19. Medhurst AD, Harrison DC, Read SJ, Campbell CA, Robbins MJ, et al. (2000) The use of TaqMan RT-PCR assays for semiquantitative analysis of gene expression in CNS tissues and disease models. J Neurosci Methods 98: 9-20.
20. Kihara AH, Paschon V, Akamine PS, Saito KC, Leonelli M, et al. (2008) Differential expression of connexins during histogenesis of the chick retina. Dev Neurobiol 68: 1287-1302.
21. Santos-Bredariol AS, Belmonte MA, Kihara AH, Santos MF, Hamassaki DE, (2006) Small GTP-binding protein RhoB is expressed in glial Muller cells in the vertebrate retina. J Comp Neurol 494: 976-985.
22. Kihara AH, Santos TO, Osuna-Melo EJ, Paschon V, Vidal KS, et al. (2010) Connexin-mediated communication controls cell proliferation and is essential in retinal histogenesis. Int J Dev Neurosci 28: 39-52.
23. Paschon V, Higa GS, Resende RR, Britto LR, Kihara AH, (2012) Blocking of Connexin-Mediated Communication Promotes Neuroprotection during Acute Degeneration Induced by Mechanical Trauma. PLoS One 7: e45449.
24. Pearson RA, Luneborg NL, Becker DL, Mobbs P, (2005) Gap junctions modulate interkinetic nuclear movement in retinal progenitor cells. J Neurosci 25: 10803-10814.
25. Reiner O, Sapir T, Gerlitz G, (2012) Interkinetic nuclear movement in the ventricular zone of the cortex. J Mol Neurosci 46: 516-526.
26. Haverkamp S, Wassle H, (2000) Immunocytochemical analysis of the mouse retina. J Comp Neurol 424: 1-23.
27. Kihara AH, Santos TO, Paschon V, Matos RJ, Britto LR, (2008) Lack of photoreceptor signaling alters the expression of specific synaptic proteins in the retina. Neuroscience 151: 995-1005.
28. Perry VH, (1981) Evidence for an amacrine cell system in the ganglion cell layer of the rat retina. Neuroscience 6: 931-944.
29. Nadal-Nicolas FM, Jimenez-Lopez M, Salinas-Navarro M, Sobrado-Calvo P, Alburquerque-Bejar JJ, et al. (2012) Whole number, distribution and co-expression of brn3 transcription factors in retinal ganglion cells of adult albino and pigmented rats. PLoS One 7: e49830.
30. Zhang C, Tso MO, (2003) Characterization of activated retinal microglia following optic axotomy. J Neurosci Res 73: 840-845.
31. Cao X, Yeo G, Muotri AR, Kuwabara T, Gage FH, (2006) Noncoding RNAs in the mammalian central nervous system. Annu Rev Neurosci 29: 77-103.
32. Vreugdenhil E, Berezikov E, (2010) Fine-tuning the brain: MicroRNAs. Front Neuroendocrinol 31: 128-133.
33. Ragan C, Zuker M, Ragan MA, (2011) Quantitative prediction of miRNA-mRNA interaction based on equilibrium concentrations. PLoS Comput Biol 7: e1001090.
34. Chatterjee S, Grosshans H, (2009) Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461: 546-549.
35. Ruegger S, Grosshans H, (2012) MicroRNA turnover: when, how, and why. Trends Biochem Sci 37: 436-446.
36. Goldie BJ, Cairns MJ, (2012) Post-transcriptional trafficking and regulation of neuronal gene expression. Mol Neurobiol 45: 99-108.
37. Endeman D, Kamermans M, (2010) Cones perform a non-linear transformation on natural stimuli. J Physiol 588: 435-446.
38. Reuter T, (2011) Fifty years of dark adaptation 1961-2011. Vision Res 51: 2243-2262.
39. Kinouchi O, Copelli M, (2006) Optimal dynamical range of excitable networks at criticality. Nature Physics 2: 348-352.
40. Publio R, Oliveira RF, Roque AC, (2009) A computational study on the role of gap junctions and rod Ih conductance in the enhancement of the dynamic range of the retina. PLoS One 4: e6970.
41. Kihara AH, Tsurumaki AM, Ribeiro-do-Valle LE, (2006) Effects of ambient lighting on visual discrimination, forward masking and attentional facilitation. Neurosci Lett 393: 36-39.
42. Kihara AH, Paschon V, Cardoso CM, Higa GS, Castro LM, et al. (2009) Connexin36, an essential element in the rod pathway, is highly expressed in the essentially rodless retina of Gallus gallus. J Comp Neurol 512: 651-663.
43. Masland RH, (2012) The tasks of amacrine cells. Vis Neurosci 29: 3-9.