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Volumn 94, Issue 1, 2013, Pages 37-46

Comparison between terminal-restriction fragment length polymorphism (T-RFLP) and quantitative culture for analysis of infants' gut microbiota

Author keywords

16S RNA; Clone; Infantile gut; Microbiota diversity; Quantitative culture; T RFLP

Indexed keywords

RNA 16S;

EID: 84877910194     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2013.04.002     Document Type: Article
Times cited : (27)

References (37)
  • 1
    • 33645450631 scopus 로고    scopus 로고
    • Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes
    • Abdo Z., Schuette U.M., Bent S.J., Williams C.J., Forney L.J., Joyce P. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ. Microbiol. 2006, 8:929-938.
    • (2006) Environ. Microbiol. , vol.8 , pp. 929-938
    • Abdo, Z.1    Schuette, U.M.2    Bent, S.J.3    Williams, C.J.4    Forney, L.J.5    Joyce, P.6
  • 3
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
    • Acinas S.G., Marcelino L.A., Klepac-Ceraj V., Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol. 2004, 186:2629-2635.
    • (2004) J. Bacteriol. , vol.186 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 4
    • 58449119188 scopus 로고    scopus 로고
    • Establishment of the gut microbiota in Western infants
    • Adlerberth I., Wold A.E. Establishment of the gut microbiota in Western infants. Acta Paediatr. 2009, 98:229-238.
    • (2009) Acta Paediatr. , vol.98 , pp. 229-238
    • Adlerberth, I.1    Wold, A.E.2
  • 5
    • 33644828006 scopus 로고    scopus 로고
    • Reduced enterobacterial and increased staphylococcal colonization of the infantile bowel: an effect of hygienic lifestyle?
    • Adlerberth I., Lindberg E., Aberg N., Hesselmar B., Saalman R., Strannegard I.L., Wold A.E. Reduced enterobacterial and increased staphylococcal colonization of the infantile bowel: an effect of hygienic lifestyle?. Pediatr. Res. 2006, 59:96-101.
    • (2006) Pediatr. Res. , vol.59 , pp. 96-101
    • Adlerberth, I.1    Lindberg, E.2    Aberg, N.3    Hesselmar, B.4    Saalman, R.5    Strannegard, I.L.6    Wold, A.E.7
  • 8
    • 0034464349 scopus 로고    scopus 로고
    • Bacterial translocation from the gastrointestinal tract
    • Berg R.D. Bacterial translocation from the gastrointestinal tract. Adv. Exp. Med. Biol. 1999, 473:11-30.
    • (1999) Adv. Exp. Med. Biol. , vol.473 , pp. 11-30
    • Berg, R.D.1
  • 10
    • 84871436898 scopus 로고    scopus 로고
    • 16S rRNA terminal restriction fragment length polymorphism for the characterization of the nasopharyngeal microbiota
    • Brugger S.D., Frei L., Frey P.M., Aebi S., Muhlemann K., Hilty M. 16S rRNA terminal restriction fragment length polymorphism for the characterization of the nasopharyngeal microbiota. PLoS One 2012, 7:e52241.
    • (2012) PLoS One , vol.7
    • Brugger, S.D.1    Frei, L.2    Frey, P.M.3    Aebi, S.4    Muhlemann, K.5    Hilty, M.6
  • 11
    • 0014244928 scopus 로고
    • The normal microbial flora as a major stimulus for proliferation of plasma cells synthesizing IgA in the gut. The germ-free intestinal tract
    • Crabbe P.A., Bazin H., Eyssen H., Heremans J.F. The normal microbial flora as a major stimulus for proliferation of plasma cells synthesizing IgA in the gut. The germ-free intestinal tract. Int. Arch. Allergy Appl. Immunol. 1968, 34:362-375.
    • (1968) Int. Arch. Allergy Appl. Immunol. , vol.34 , pp. 362-375
    • Crabbe, P.A.1    Bazin, H.2    Eyssen, H.3    Heremans, J.F.4
  • 12
    • 0037388225 scopus 로고    scopus 로고
    • Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
    • (796, 798 passim)
    • Crosby L.D., Criddle C.S. Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques 2003, 34:790-794. (796, 798 passim).
    • (2003) Biotechniques , vol.34 , pp. 790-794
    • Crosby, L.D.1    Criddle, C.S.2
  • 15
    • 0043031094 scopus 로고    scopus 로고
    • Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism
    • Engebretson J.J., Moyer C.L. Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism. Appl. Environ. Microbiol. 2003, 69:4823-4829.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4823-4829
    • Engebretson, J.J.1    Moyer, C.L.2
  • 16
    • 34848925453 scopus 로고    scopus 로고
    • Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers
    • Farris M.H., Olson J.B. Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers. Lett. Appl. Microbiol. 2007, 45:376-381.
    • (2007) Lett. Appl. Microbiol. , vol.45 , pp. 376-381
    • Farris, M.H.1    Olson, J.B.2
  • 17
    • 84860687144 scopus 로고    scopus 로고
    • Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice (Oryza sativa) varieties
    • Ferrando L., Fernandez Manay J., Fernandez Scavino A. Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice (Oryza sativa) varieties. FEMS Microbiol. Ecol. 2012, 80:696-708.
    • (2012) FEMS Microbiol. Ecol. , vol.80 , pp. 696-708
    • Ferrando, L.1    Fernandez Manay, J.2    Fernandez Scavino, A.3
  • 18
    • 0028071557 scopus 로고
    • Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994
    • Gutell R.R. Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994. Nucleic Acids Res. 1994, 22:3502-3507.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 19
    • 0034849870 scopus 로고    scopus 로고
    • Influence of fluorophor dye labels on the migration behavior of polymerase chain reaction-amplified short tandem repeats during denaturing capillary electrophoresis
    • Hahn M., Wilhelm J., Pingoud A. Influence of fluorophor dye labels on the migration behavior of polymerase chain reaction-amplified short tandem repeats during denaturing capillary electrophoresis. Electrophoresis 2001, 22:2691-2700.
    • (2001) Electrophoresis , vol.22 , pp. 2691-2700
    • Hahn, M.1    Wilhelm, J.2    Pingoud, A.3
  • 20
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi H., Sakamoto M., Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. 2002, 46:535-548.
    • (2002) Microbiol. Immunol. , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 23
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 1997, 63:4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 24
    • 17644367543 scopus 로고    scopus 로고
    • Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota
    • Matsumoto M., Sakamoto M., Hayashi H., Benno Y. Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota. J. Microbiol. Methods 2005, 61:305-319.
    • (2005) J. Microbiol. Methods , vol.61 , pp. 305-319
    • Matsumoto, M.1    Sakamoto, M.2    Hayashi, H.3    Benno, Y.4
  • 25
    • 0036242883 scopus 로고    scopus 로고
    • A comparison of five methods for extraction of bacterial DNA from human faecal samples
    • McOrist A.L., Jackson M., Bird A.R. A comparison of five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 2002, 50:131-139.
    • (2002) J. Microbiol. Methods , vol.50 , pp. 131-139
    • McOrist, A.L.1    Jackson, M.2    Bird, A.R.3
  • 26
    • 78650010623 scopus 로고    scopus 로고
    • Characterization of psychrotrophic bacterial communities in modified atmosphere-packed meat with terminal restriction fragment length polymorphism
    • Nieminen T.T., Vihavainen E., Paloranta A., Lehto J., Paulin L., Auvinen P., Solismaa M., Bjorkroth K.J. Characterization of psychrotrophic bacterial communities in modified atmosphere-packed meat with terminal restriction fragment length polymorphism. Int. J. Food Microbiol. 2011, 144:360-366.
    • (2011) Int. J. Food Microbiol. , vol.144 , pp. 360-366
    • Nieminen, T.T.1    Vihavainen, E.2    Paloranta, A.3    Lehto, J.4    Paulin, L.5    Auvinen, P.6    Solismaa, M.7    Bjorkroth, K.J.8
  • 28
    • 33847298917 scopus 로고    scopus 로고
    • Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers
    • Pandey J., Ganesan K., Jain R.K. Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. J. Microbiol. Methods 2007, 68:633-638.
    • (2007) J. Microbiol. Methods , vol.68 , pp. 633-638
    • Pandey, J.1    Ganesan, K.2    Jain, R.K.3
  • 29
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A. Multivariate analyses in microbial ecology. FEMS Microbiol. Ecol. 2007, 62:142-160.
    • (2007) FEMS Microbiol. Ecol. , vol.62 , pp. 142-160
    • Ramette, A.1
  • 30
    • 0017341656 scopus 로고
    • Microbial ecology of the gastrointestinal tract
    • Savage D.C. Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 1977, 31:107-133.
    • (1977) Annu. Rev. Microbiol. , vol.31 , pp. 107-133
    • Savage, D.C.1
  • 31
    • 0023896026 scopus 로고
    • Comparison of translocation rates of various indigenous bacteria from the gastrointestinal tract to the mesenteric lymph node
    • Steffen E.K., Berg R.D., Deitch E.A. Comparison of translocation rates of various indigenous bacteria from the gastrointestinal tract to the mesenteric lymph node. J. Infect. Dis. 1988, 157:1032-1038.
    • (1988) J. Infect. Dis. , vol.157 , pp. 1032-1038
    • Steffen, E.K.1    Berg, R.D.2    Deitch, E.A.3
  • 32
    • 4344626157 scopus 로고    scopus 로고
    • T-RFLP combined with principal component analysis and 16S rRNA gene sequencing: an effective strategy for comparison of fecal microbiota in infants of different ages
    • Wang M., Ahrne S., Antonsson M., Molin G. T-RFLP combined with principal component analysis and 16S rRNA gene sequencing: an effective strategy for comparison of fecal microbiota in infants of different ages. J. Microbiol. Methods 2004, 59:53-69.
    • (2004) J. Microbiol. Methods , vol.59 , pp. 53-69
    • Wang, M.1    Ahrne, S.2    Antonsson, M.3    Molin, G.4
  • 33
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73:5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 36
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson K.H., Blitchington R.B. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 1996, 62:2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.