Coupling of septins to the axial landmark by bud4 in budding yeast

Journal of Cell Science

Volumn 126, Issue 5, 2013, Pages 1218-1226

  Kang, Pil Jung ^a   Hood DeGrenier, Jennifer K ^b   Park, Hay Oak ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b WORCESTER STATE UNIVERSITY   (United States)

Author keywords

Anillin related protein; Axial budding pattern; Budding yeast; Septins

Indexed keywords

FUNGAL PROTEIN; GREEN FLUORESCENT PROTEIN; GUANOSINE TRIPHOSPHATE; MUTANT PROTEIN; PLECKSTRIN; PROTEIN BUD4; SEPTIN; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL DIVISION; CONTROLLED STUDY; CYTOKINESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

CELL CYCLE PROTEINS; CYTOKINESIS; GTP-BINDING PROTEINS; IMMUNOBLOTTING; IMMUNOPRECIPITATION; MICROSCOPY, FLUORESCENCE; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEPTINS;

EID: 84877887725     PISSN: 00219533     EISSN: 14779137     Source Type: Journal    
DOI: 10.1242/jcs.118521     Document Type: Article

References (55)

1. Archambault, V., Chang, E. J., Drapkin, B. J., Cross, F. R., Chait, B. T. and Rout, M. P. (2004). Targeted proteomic study of the cyclin-Cdk module. Mol. Cell 14, 699- 711.
2. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G. and Struhl, K. (1999). Current Protocols in Molecular Biology. New York, NY: John Wiley & Sons.
3. Bender, A. (1993). Genetic evidence for the roles of the bud-site-selection genes BUD5 and BUD2 in control of the Rsr1p (Bud1p) GTPase in yeast. Proc. Natl. Acad. Sci. USA 90, 9926-9929.
4. Bender, A. and Pringle, J. R. (1989). Multicopy suppression of the cdc24 budding defect in yeast by CDC42 and three newly identified genes including the ras-related gene RSR1. Proc. Natl. Acad. Sci. USA 86, 9976-9980.
5. Berlin, A., Paoletti, A. and Chang, F. (2003). Mid2p stabilizes septin rings during cytokinesis in fission yeast. J. Cell Biol. 160, 1083-1092.
6. Bi, E. and Pringle, J. R. (1996). ZDS1 and ZDS2, genes whose products may regulate Cdc42p in Saccharomyces cerevisiae. Mol. Cell. Biol. 16, 5264-5275.
7. Bi, E. and Park, H.-O. (2012). Cell polarization and cytokinesis in budding yeast. Genetics 191, 347-387.
8. Bloom, J., Cristea, I. M., Procko, A. L., Lubkov, V., Chait, B. T., Snyder, M. and Cross, F. R. (2011). Global analysis of Cdc14 phosphatase reveals diverse roles in mitotic processes. J. Biol. Chem. 286, 5434-5445.
9. Chant, J. and Herskowitz, I. (1991). Genetic control of bud site selection in yeast by a set of gene products that constitute a morphogenetic pathway. Cell 65, 1203-1212.
10. Chant, J. and Pringle, J. R. (1995). Patterns of bud-site selection in the yeast Saccharomyces cerevisiae. J. Cell Biol. 129, 751-765.
11. Chant, J., Corrado, K., Pringle, J. R. and Herskowitz, I. (1991). Yeast BUD5, encoding a putative GDP-GTP exchange factor, is necessary for bud site selection and interacts with bud formation gene BEM1. Cell 65, 1213-1224.
12. Chant, J., Mischke, M., Mitchell, E., Herskowitz, I. and Pringle, J. R. (1995). Role of Bud3p in producing the axial budding pattern of yeast. J. Cell Biol. 129, 767-778.
13. Chi, A., Huttenhower, C., Geer, L. Y., Coon, J. J., Syka, J. E. P., Bai, D. L., Shabanowitz, J., Burke, D. J., Troyanskaya, O. G. and Hunt, D. F. (2007). Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc. Natl. Acad. Sci. USA 104, 2193-2198.
14. Egriboz, O., Jiang, F. and Hopper, J. E. (2011). Rapid GAL gene switch of Saccharomyces cerevisiae depends on nuclear Gal3, not nucleocytoplasmic trafficking of Gal3 and Gal80. Genetics 189, 825-836.
15. Eluère, R., Varlet, I., Bernadac, A. and Simon, M. N. (2012). Cdk and the anillin homolog Bud4 define a new pathway regulating septin organization in yeast. Cell Cycle 11, 151-158.
16. Flescher, E. G., Madden, K. and Snyder, M. (1993). Components required for cytokinesis are important for bud site selection in yeast. J. Cell Biol. 122, 373-386.
17. Frazier, J. A., Wong, M. L., Longtine, M. S., Pringle, J. R., Mann, M., Mitchison, T. J. and Field, C. (1998). Polymerization of purified yeast septins: evidence that organized filament arrays may not be required for septin function. J. Cell Biol. 143, 737-749.
18. Freifelder, D. (1960). Bud position in Saccharomyces cerevisiae. J. Bacteriol. 80, 567- 568.
19. Gao, X. D., Sperber, L. M., Kane, S. A., Tong, Z., Tong, A. H., Boone, C. and Bi, E. (2007). Sequential and distinct roles of the cadherin domain-containing protein Axl2p in cell polarization in yeast cell cycle. Mol. Biol. Cell 18, 2542-2560.
20. Guthrie, C. and Fink, G. R. (1991). Guide to Yeast Genetics and Molecular Biology. San Diego, CA: Academic Press.
21. Halme, A., Michelitch, M., Mitchell, E. L. and Chant, J. (1996). Bud10p directs axial cell polarization in budding yeast and resembles a transmembrane receptor. Curr. Biol. 6, 570-579.
22. Hicks, J. B., Strathern, J. N. and Herskowitz, I. (1977). Interconversion of yeast mating types III. Action of the homothallism (HO) gene in cells homozygous for the mating type locus. Genetics 85, 395-405.
23. Holt, L. J., Tuch, B. B., Villen, J., Johnson, A. D., Gygi, S. P. and Morgan, D. O. (2009). Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325, 1682-1686.
24. Iwase, M., Luo, J., Nagaraj, S., Longtine, M., Kim, H. B., Haarer, B. K., Caruso, C., Tong, Z., Pringle, J. R. and Bi, E. (2006). Role of a Cdc42p effector pathway in recruitment of the yeast septins to the presumptive bud site. Mol. Biol. Cell 17, 1110-1125.
25. Kang, P. J., Sanson, A., Lee, B. and Park, H.-O. (2001). A GDP/GTP exchange factor involved in linking a spatial landmark to cell polarity. Science 292, 1376-1378.
26. Kang, P. J., Angerman, E., Nakashima, K., Pringle, J. R. and Park, H.-O. (2004a). Interactions among Rax1p, Rax2p, Bud8p, and Bud9p in marking cortical sites for bipolar bud-site selection in yeast. Mol. Biol. Cell 15, 5145-5157.
27. Kang, P. J., Lee, B. and Park, H.-O. (2004b). Specific residues of the GDP/GTP exchange factor Bud5p are involved in establishment of the cell type-specific budding pattern in yeast. J. Biol. Chem. 279, 27980-27985.
28. Kang, P. J., Béven, L., Hariharan, S. and Park, H.-O. (2010). The Rsr1/Bud1 GTPase interacts with itself and the Cdc42 GTPase during bud-site selection and polarity establishment in budding yeast. Mol. Biol. Cell 21, 3007-3016.
29. Kang, P. J., Angerman, E., Jung, C. H. and Park, H. O. (2012). Bud4 mediates the cell-type-specific assembly of the axial landmark in budding yeast. J. Cell Sci. 125, 3840-3849.
30. Kinoshita, M., Field, C. M., Coughlin, M. L., Straight, A. F. and Mitchison, T. J. (2002). Self- and actin-templated assembly of Mammalian septins. Dev. Cell 3, 791- 802.
31. Kozminski, K. G., Beven, L., Angerman, E., Tong, A. H. Y., Boone, C. and Park, H.-O. (2003). Interaction between a Ras and a Rho GTPase couples selection of a growth site to the development of cell polarity in yeast. Mol. Biol. Cell 14, 4958-4970.
32. Lemmon, M. A. (2004). Pleckstrin homology domains: not just for phosphoinositides. Biochem. Soc. Trans. 32, 707-711.
33. Lippincott, J. and Li, R. (1998). Dual function of Cyk2, a cdc15/PSTPIP family protein, in regulating actomyosin ring dynamics and septin distribution. J. Cell Biol. 143, 1947-1960.
34. Lord, M., Inose, F., Hiroko, T., Hata, T., Fujita, A. and Chant, J. (2002). Subcellular localization of Axl1, the cell type-specific regulator of polarity. Curr. Biol. 12, 1347- 1352.
35. Oh, Y. and Bi, E. (2011). Septin structure and function in yeast and beyond. Trends Cell Biol. 21, 141-148.
36. Park, H.-O., Chant, J. and Herskowitz, I. (1993). BUD2 encodes a GTPase-activating protein for Bud1/Rsr1 necessary for proper bud-site selection in yeast. Nature 365, 269-274.
37. Park, H.-O., Bi, E., Pringle, J. R. and Herskowitz, I. (1997). Two active states of the Ras-related Bud1/Rsr1 protein bind to different effectors to determine yeast cell polarity. Proc. Natl. Acad. Sci. USA 94, 4463-4468.
38. Park, H.-O., Kang, P. J. and Rachfal, A. W. (2002). Localization of the Rsr1/Bud1 GTPase involved in selection of a proper growth site in yeast. J. Biol. Chem. 277, 26721-26724.
39. Peng, J., Schwartz, D., Elias, J. E., Thoreen, C. C., Cheng, D., Marsischky, G., Roelofs, J., Finley, D. and Gygi, S. P. (2003). A proteomics approach to understanding protein ubiquitination. Nat. Biotechnol. 21, 921-926.
40. Piekny, A. J. and Maddox, A. S. (2010). The myriad roles of Anillin during cytokinesis. Semin. Cell Dev. Biol. 21, 881-891.
41. Pringle, J. R. (1991). Staining of bud scars and other cell wall chitin with Calcofluor. In Methods Enzymol, vol. 194 (ed. C. Guthrie and G. R. Fink), pp. 732-735. San Diego, CA: Academic Press.
42. Roemer, T., Madden, K., Chang, J. and Snyder, M. (1996). Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein. Genes Dev. 10, 777-793.
43. Sanders, S. L. and Herskowitz, I. (1996). The BUD4 protein of yeast, required for axial budding, is localized to the mother/BUD neck in a cell cycle-dependent manner. J. Cell Biol. 134, 413-427.
44. Seyfried, N. T., Xu, P., Duong, D. M., Cheng, D., Hanfelt, J. and Peng, J. (2008). Systematic approach for validating the ubiquitinated proteome. Anal. Chem. 80, 4161- 4169.
45. Singh, K., Kang, P. J. and Park, H.-O. (2008). The Rho5 GTPase is necessary for oxidant-induced cell death in budding yeast. Proc. Natl. Acad. Sci. USA 105, 1522- 1527.
46. Smolka, M. B., Albuquerque, C. P., Chen, S. H. and Zhou, H. (2007). Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases. Proc. Natl. Acad. Sci. USA 104, 10364-10369.
47. Snyder, M., Gehrung, S. and Page, B. D. (1991). Studies concerning the temporal and genetic control of cell polarity in Saccharomyces cerevisiae. J. Cell Biol. 114, 515- 532.
48. Starita, L. M., Lo, R. S., Eng, J. K., von Haller, P. D. and Fields, S. (2012). Sites of ubiquitin attachment in Saccharomyces cerevisiae. Proteomics 12, 236-240.
49. Straight, A. F., Marshall, W. F., Sedat, J. W. and Murray, A. W. (1997). Mitosis in living budding yeast: anaphase A but no metaphase plate. Science 277, 574-578.
50. Tasto, J. J., Morrell, J. L. and Gould, K. L. (2003). An anillin homologue, Mid2p, acts during fission yeast cytokinesis to organize the septin ring and promote cell separation. J. Cell Biol. 160, 1093-1103.
51. Tong, Z., Gao, X.-D., Howell, A. S., Bose, I., Lew, D. J. and Bi, E. (2007). Adjacent positioning of cellular structures enabled by a Cdc42 GTPase-activating proteinmediated zone of inhibition. J. Cell Biol. 179, 1375-1384.
52. Versele, M. and Thorner, J. (2005). Some assembly required: yeast septins provide the instruction manual. Trends Cell Biol. 15, 414-424.
53. Wloka, C., Nishihama, R., Onishi, M., Oh, Y., Hanna, J., Pringle, J. R., Krauss, M. and Bi, E. (2011). Evidence that a septin diffusion barrier is dispensable for cytokinesis in budding yeast. Biol. Chem. 392, 813-829.
54. Yu, J. W., Mendrola, J. M., Audhya, A., Singh, S., Keleti, D., DeWald, D. B., Murray, D., Emr, S. D. and Lemmon, M. A. (2004). Genome-wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains. Mol. Cell 13, 677- 688.
55. Ziv, I., Matiuhin, Y., Kirkpatrick, D. S., Erpapazoglou, Z., Leon, S., Pantazopoulou, M., Kim, W., Gygi, S. P., Haguenauer-Tsapis, R., Reis, N. et al. (2011). A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis. Mol. Cell Proteomics 10, 009753.