Dyadobacter jejuensis sp. nov., isolated from seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 5, 2013, Pages 1788-1792

  Chun, Jeesun ^a   Kang, Ji Young ^a   Joung, Yochan ^b   Kim, Haneul ^c   Joh, Kiseong ^c   Jahng, Kwang Yeop ^a  

^a Chonbuk National University   (South Korea)

^b Kangwon National University   (South Korea)

^c Hankuk University of Foreign Studies   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHATIDYLETHANOLAMINE; RNA 16S; SEA WATER;

ARTICLE; BACTERIAL GENETICS; BACTERIUM IDENTIFICATION; CARBON SOURCE; DNA BASE COMPOSITION; DYADOBACTER JEJUENSIS; ENZYME ACTIVITY; ENZYME MECHANISM; ENZYME SYNTHESIS; FLEXIBACTERACEAE; GENE SEQUENCE; GRAM NEGATIVE AEROBIC RODS AND COCCI; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL;

EID: 84877856381     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.043620-0     Document Type: Article

References (24)

1. Baik, K. S., Kim, M. S., Kim, E. M., Kim, H. R. & Seong, C. N. (2007). Dyadobacter koreensis sp. nov., isolated from fresh water. Int J Syst Evol Microbiol 57, 1227-1231.
2. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Chaturvedi, P., Reddy, G. S. & Shivaji, S. (2005). Dyadobacter hamtensis sp. nov., from Hamta glacier, located in the Himalayas, India. Int J Syst Evol Microbiol 55, 2113-2117.
4. Chelius, M. K. & Triplett, E. W. (2000). Dyadobacter fermentans gen. nov., sp. nov., a novel gram-negative bacterium isolated from surfacesterilized Zea mays stems. Int J Syst Evol Microbiol 50, 751-758.
5. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
6. Dong, Z., Guo, X., Zhang, X., Qiu, F., Sun, L., Gong, H. & Zhang, F. (2007). Dyadobacter beijingensis sp. nov., isolated from the rhizosphere of turf grasses in China. Int J Syst Evol Microbiol 57, 862-865.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol 20, 406-416.
8. Güde, H. (1980). Occurrence of cytophagas in sewage plants. Appl Environ Microbiol 39, 756-763.
9. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Lee, M., Woo, S. G., Park, J. & Yoo, S. A. (2010). Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil. Int J Syst Evol Microbiol 60, 2577-2582.
12. Liu, Q. M., Im, W. T., Lee, M., Yang, D. C. & Lee, S. T. (2006). Dyadobacter ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 56, 1939-1944.
13. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/ thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306.
14. Reddy, G. S. & Garcia-Pichel, F. (2005). Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000. Int J Syst Evol Microbiol 55, 1295-1299.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
19. Tang, Y., Dai, J., Zhang, L., Mo, Z., Wang, Y., Li, Y., Ji, S., Fang, C. & Zheng, C. (2009). Dyadobacter alkalitolerans sp. nov., isolated from desert sand. Int J Syst Evol Microbiol 59, 60-64.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Tittsler, R. P. & Sandholzer, L. A. (1936). The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31, 575-580.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
24. Zhang, D. C., Liu, H. C., Xin, Y. H., Zhou, Y. G., Schinner, F. & Margesin, R. (2010). Dyadobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil. Int J Syst Evol Microbiol 60, 1640-1643.