High Resolution Melting Analysis as a Rapid and Highly Sensitive Method for Cichorium Plasmotype Characterization

Plant Molecular Biology Reporter

Volumn 31, Issue 3, 2013, Pages 731-740

  Deryckere, Dieter ^a   de Keyser, Ellen ^a   Eeckhaut, Tom ^a   van Huylenbroeck, Johan ^a   van Bockstaele, Erik ^a,b  

^a INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

Cichorium; Cytoplasmic markers; High resolution melting (HRM); Somatic hybridization

Indexed keywords

CICHORIUM; CICHORIUM ENDIVIA; CICHORIUM INTYBUS; SATIVUM;

EID: 84877823651     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-012-0547-y     Document Type: Article

References (33)

1. Bellamy A, Mathieu C, Vedel F, Bannerot H (1995) Cytoplasmic DNAs and nuclear rDNA restriction-fragment-length-polymorphisms in commercial Witloof chicories. Theor Appl Genet 91: 505-509.
2. Bellamy A, Vedel F, Bannerot H (1996) Varietal identification in Cichorium intybus L and determination of genetic purity of F-1 hybrid seed samples, based on RAPD markers. Plant Breed 115: 128-132.
3. Botticella E, Sestili F, Hernandez-Lopez A, Phillips A, Lafiandra D (2011) High-resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes. BMC Plant Biol 11.
4. Cadalen T, Mörchen M, Blassiau C, Clabaut A, Scheer I, Hilbert J-L, Hendriks T, Quillet M-C (2010) Development of SSR markers and construction of a consensus genetic map for chicory (Cichorium intybus L.). Mol Breed 25: 699-722.
5. Cappelle C, Morchen M, Hilbert JL, Rambaud C (2007) Regeneration and molecular characterization of a male sterile interspecific somatic hybrid between Cichorium intybus and C. endivia. Plant Sci 172: 596-603.
6. Costa J, Mafra I, Oliveira MBPP (2012) High-resolution melting analysis as a new approach to detect almond DNA encoding for Pru du 5 allergen in foods. Food Chem 133: 1062-1069.
7. De Koeyer D, Douglass K, Murphy A, Whitney S, Nolan L, Song Y, De Jong W (2010) Application of high-resolution DNA melting for genotyping and variant scanning of diploid and autotetraploid potato. Mol Breed 25: 67-90.
8. Deryckere D, Eeckhaut T, van Huylenbroeck J, van Bockstaele E (2012) Low melting point agarose beads as a standard method for plantlet regeneration from protoplasts within the Cichorium genus. Plant Cell Rep 31: 2261-2269 doi: 10. 1007/s00299-012-1335-8.
9. Ganopoulos I, Bosmali I, Madesis P, Tsaftaris A (2012) Microsatellite genotyping with HRM (high-resolution melting) analysis for identification of the PGI common bean variety Plake Megalosperma Prespon. Eur Food Res Technol 234: 501-508.
10. Gonthier L, Bellec A, Blassiau C, Prat E, Helmstetter N, Rambaud C, Huss B, Hendriks T, Berges H, Quillet M-C (2010) Construction and characterization of two BAC libraries representing a deep-coverage of the genome of chicory (Cichorium intybus L., Asteraceae). BMC Research Notes.
11. Han YH, Khu DM, Monteros MJ (2012) High-resolution melting analysis for SNP genotyping and mapping in tetraploid alfalfa (Medicago sativa L.). Mol Breed 29: 489-501.
12. Herrmann MG, Durtschi JD, Bromley LK, Wittwer CT, Voelkerding KV (2006) Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes. Clin Chem 52: 494-503.
13. Hofinger BJ, Jing HC, Hammond-Kosack KE, Kanyuka K (2009) High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theor Appl Genet 119: 851-865.
14. Jeong HJ, Kwon JK, Pandeya D, Hwang J, Hoang NH, Bae JH, Kang BC (2012) A survey of natural and ethyl methane sulfonate-induced variations of eIF4E using high-resolution melting analysis in Capsicum. Mol Breed 29: 349-360.
15. Kiers AM, Mes THM, van der Meijden R, Bachmann K (2000) A search for diagnostic AFLP markers in Cichorium species with emphasis on endive and chicory cultivar groups. Genome 43: 470-476.
16. Krypuy M, Newnham GM, Thomas DM, Conron M, Dobrovic A (2006) High-resolution melting analysis for the rapid and sensitive detection of mutations in clinical samples: KRAS codon 12 and 13 mutations in non-small cell lung cancer. BMC Cancer 6.
17. Lehmensiek A, Sutherland MW, McNamara RB (2008) The use of high-resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley. Theor Appl Genet 117: 721-728.
18. Li JS, Wang XM, Dong RX, Yang Y, Zhou J, Yu CL, Cheng Y, Yan CQ, Chen JP (2011) Evaluation of high-resolution melting for gene mapping in rice. Plant Mol Biol Rep 29: 979-985.
19. Liew M, Pryor R, Palais R, Meadows C, Erali M, Lyon E, Wittwer C (2004) Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem 50: 1156-1164.
20. Lochlainn SO, Amoah S, Graham NS, Alamer K, Rios JJ, Kurup S, Stoute A, Hammond JP, Ostergaard L, King GJ, White PJ, Broadley MR (2011) High-resolution melt (HRM) analysis is an efficient tool to genotype EMS mutants in complex crop genomes. Plant Methods 7.
21. Lucchin M, Varotto S, Barcaccia G, Parrini P (2008) Chicory and endive. In: Handbook of plant breeding vegetables I. Springer, New York, pp 428, 3-48.
22. Mackay JF, Wright CD, Bonfiglioli RG (2008) A new approach to varietal identification in plants by microsatellite high-resolution melting analysis: application to the verification of grapevine and olive cultivars. Plant Methods 4.
23. Michel F, Lazowska J, Faye G, Fukuhara H, Slonimski PP (1974) Physical and genetic organization of petite and grande yeast mitochondrial DNA: III. High-resolution melting and reassociation studies. J Mol Biol 85: 411-431.
24. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plantarum 15: 473-497.
25. Reed GH, Wittwer CT (2004) Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem 50: 1748-1754.
26. Seipp MT, Durtschi JD, Liew MA, Williams J, Damjanovich K, Pont-Kingdon G, Lyon E, Voelkerding KV, Wittwert CT (2007) Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting. J Mol Diagn 9: 284-289.
27. Sinthuwiwat T, Poowasanpetch P, Wongngamrungroj A, Promso S, Auewarakul C, Mooney S, Tocharoentanaphol C (2008) High-resolution melting curve analysis for genotyping of common SNP in MTHFR gene using fixed-cell suspension. Mol Cell Probe 22: 329-332.
28. Studer B, Jensen LB, Fiil A, Asp T (2009) "Blind" mapping of genic DNA sequence polymorphisms in Lolium perenne L. by high-resolution melting curve analysis. Mol Breed 24: 191-199.
29. Varotto S, Nenz E, Lucchin M, Parrini P (2001) Production of asymmetric somatic hybrid plants between Cichorium intybus L. and Helianthus annuus L. Theor Appl Genet 102: 950-956.
30. White H, Potts G (2006) Mutation scanning by high-resolution melt analysis. Evaluation of rotor-gene 6000 (Corbett Life Science), HR-1 and 384-well lightscanner (Idaho Technology). National Genetics Reference Laboratory (Wessex 2006).
31. Wittwer CT, Reed GH, Gundry CN, Vandersteen JG, Pryor RJ (2003) High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem 49: 853-860.
32. Wu SB, Wirthensohn M, Hunt P, Gibson J, Sedgley M (2008) High-resolution melting analysis of almond SNPs derived from ESTs. Theor Appl Genet 118: 1-14.
33. Wu SB, Franks TK, Hunt P, Wirthensohn MG, Gibson JP, Sedgley M (2010) Discrimination of SNP genotypes associated with complex haplotypes by high-resolution melting analysis in almond: implications for improved marker efficiencies. Mol Breed 25: 351-357.