-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
9254694 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0000811897
-
Occurrence and some properties of eledoisin in extracts of posterior salivary glands of Eledone
-
14012711 10.1111/j.1476-5381.1962.tb01197.x 1:CAS:528:DyaF38XkvVKjtbo%3D
-
Anastasi A, Erspamer V (1962) Occurrence and some properties of eledoisin in extracts of posterior salivary glands of Eledone. Br J Pharmacol Chemother 19:326-333
-
(1962)
Br J Pharmacol Chemother
, vol.19
, pp. 326-333
-
-
Anastasi, A.1
Erspamer, V.2
-
3
-
-
0035896024
-
ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
11243830 10.1006/jmbi.2000.4474 1:CAS:528:DC%2BD3MXhslSnsb8%3D
-
Armon A, Graur D, Ben-Tal N (2001) ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information. J Mol Biol 307:447-463
-
(2001)
J Mol Biol
, vol.307
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
4
-
-
0017400235
-
Alpha- and beta-cephalotoxin: Two paralysing proteins from posterior salivary glands of Octopus vulgaris
-
20275 10.1016/0306-4492(77)90066-1 1:CAS:528:DyaE2sXlvVWjtrg%3D
-
Cariello L, Zanetti L (1977) Alpha- and beta-cephalotoxin: two paralysing proteins from posterior salivary glands of Octopus vulgaris. Comp Biochem Physiol C 57:169-173
-
(1977)
Comp Biochem Physiol C
, vol.57
, pp. 169-173
-
-
Cariello, L.1
Zanetti, L.2
-
5
-
-
79960307199
-
Domain loss facilitates accelerated evolution and neofunctionalization of duplicate snake venom metalloproteinase toxin genes
-
21478373 10.1093/molbev/msr091 1:CAS:528:DC%2BC3MXhtFShu7fN
-
Casewell NR, Wagstaff SC, Harrison RA, Renjifo C, Wuster W (2011) Domain loss facilitates accelerated evolution and neofunctionalization of duplicate snake venom metalloproteinase toxin genes. Mol Biol Evol 28:2637-2649
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2637-2649
-
-
Casewell, N.R.1
Wagstaff, S.C.2
Harrison, R.A.3
Renjifo, C.4
Wuster, W.5
-
6
-
-
84864721498
-
Extensive and continuous duplication facilitates rapid evolution and diversification of gene families
-
22337864 10.1093/molbev/mss068 1:CAS:528:DC%2BC38XhtFagu7fL
-
Chang D, Duda TF Jr (2012) Extensive and continuous duplication facilitates rapid evolution and diversification of gene families. Mol Biol Evol 29:2019-2029
-
(2012)
Mol Biol Evol
, vol.29
, pp. 2019-2029
-
-
Chang, D.1
Duda Jr., T.F.2
-
8
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
20671151 10.1093/bioinformatics/btq429 1:CAS:528:DC%2BC3cXht1Whtb7F
-
Delport W, Poon AF, Frost SD, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26:2455-2457
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.2
Frost, S.D.3
Kosakovsky Pond, S.L.4
-
9
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
10.1002/(SICI)1096-987X(199802)19:3<319: AID-JCC6>3.0.CO;2-W 1:CAS:528:DyaK1cXosVymsw%3D%3D
-
Fraczkiewicz R, Braun W (1998) Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J Comput Chem 19:319-333
-
(1998)
J Comput Chem
, vol.19
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
10
-
-
15544369378
-
From genome to "venome": Molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins
-
15741511 10.1101/gr.3228405 1:CAS:528:DC%2BD2MXitVWksLc%3D
-
Fry BG (2005) From genome to "venome": molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins. Genome Res 15:403-420
-
(2005)
Genome Res
, vol.15
, pp. 403-420
-
-
Fry, B.G.1
-
11
-
-
0042171600
-
Molecular evolution and phylogeny of elapid snake venom three-finger toxins
-
12962311 10.1007/s00239-003-2461-2 1:CAS:528:DC%2BD3sXmtV2js74%3D
-
Fry BG, Wüster W, Kini RM, Brusic V, Khan A, Venkataraman D, Rooney AP (2003) Molecular evolution and phylogeny of elapid snake venom three-finger toxins. J Mol Evol 57:110-129
-
(2003)
J Mol Evol
, vol.57
, pp. 110-129
-
-
Fry, B.G.1
Wüster, W.2
Kini, R.M.3
Brusic, V.4
Khan, A.5
Venkataraman, D.6
Rooney, A.P.7
-
12
-
-
64949131873
-
Tentacles of venom: Toxic protein convergence in the kingdom animalia
-
19294452 10.1007/s00239-009-9223-8 1:CAS:528:DC%2BD1MXksVCgu70%3D
-
Fry BG, Roelants K, Norman JA (2009) Tentacles of venom: toxic protein convergence in the kingdom animalia. J Mol Evol 68:311-321
-
(2009)
J Mol Evol
, vol.68
, pp. 311-321
-
-
Fry, B.G.1
Roelants, K.2
Norman, J.A.3
-
13
-
-
0000423937
-
Cephalotoxin: The crab-paralysing agent of the posterior salivary glands of cephalopods
-
10.1038/1831192b0
-
Ghiretti F (1959) Cephalotoxin: the crab-paralysing agent of the posterior salivary glands of cephalopods. Nature 183:1192-1193
-
(1959)
Nature
, vol.183
, pp. 1192-1193
-
-
Ghiretti, F.1
-
14
-
-
0000815012
-
Toxicity of octopus saliva against crustacea
-
13704937 10.1111/j.1749-6632.1960.tb26417.x 1:STN:280: DyaF3c%2FisVCgtA%3D%3D
-
Ghiretti F (1960) Toxicity of octopus saliva against crustacea. Ann N Y Acad Sci 90:726-741
-
(1960)
Ann N y Acad Sci
, vol.90
, pp. 726-741
-
-
Ghiretti, F.1
-
15
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
7968486 1:CAS:528:DyaK2cXmt1eit70%3D
-
Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11:725-736
-
(1994)
Mol Biol Evol
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
16
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
18445632 10.1093/nar/gkn176 1:CAS:528:DC%2BD1cXmvFWgtLs%3D
-
Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talon M, Dopazo J, Conesa A (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36:3420-3435
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Gotz, S.1
Garcia-Gomez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
Nueda, M.J.6
Robles, M.7
Talon, M.8
Dopazo, J.9
Conesa, A.10
-
17
-
-
79953315365
-
B2G-FAR, a species-centered GO annotation repository
-
21335611 10.1093/bioinformatics/btr059
-
Gotz S, Arnold R, Sebastian-Leon P, Martin-Rodriguez S, Tischler P, Jehl MA, Dopazo J, Rattei T, Conesa A (2011) B2G-FAR, a species-centered GO annotation repository. Bioinformatics 27:919-924
-
(2011)
Bioinformatics
, vol.27
, pp. 919-924
-
-
Gotz, S.1
Arnold, R.2
Sebastian-Leon, P.3
Martin-Rodriguez, S.4
Tischler, P.5
Jehl, M.A.6
Dopazo, J.7
Rattei, T.8
Conesa, A.9
-
18
-
-
0027157842
-
Separation and partial characterization of salivary enzymes expressed during prey handling in the octopus eledone cirrhosa
-
10.1016/0300-9629(93)90193-8
-
Grisley MS (1993) Separation and partial characterization of salivary enzymes expressed during prey handling in the octopus eledone cirrhosa. Comp Biochem Physiol B 105:183-192
-
(1993)
Comp Biochem Physiol B
, vol.105
, pp. 183-192
-
-
Grisley, M.S.1
-
19
-
-
0001199296
-
Bioassay and proteolytic activity of digestive enzymes from octopus saliva
-
Grisley MS, Boyle PR (1987) Bioassay and proteolytic activity of digestive enzymes from octopus saliva. Comp Biochem Physiol B 88:1117-1123
-
(1987)
Comp Biochem Physiol B
, vol.88
, pp. 1117-1123
-
-
Grisley, M.S.1
Boyle, P.R.2
-
21
-
-
0037258797
-
Isolation and characterization of novel tachykinins from the posterior salivary gland of the common octopus Octopus vulgaris
-
12576083 10.1016/S0196-9781(02)00274-7 1:CAS:528:DC%2BD3sXptFGltg%3D%3D
-
Kanda A, Iwakoshi-Ukena E, Takuwa-Kuroda K, Minakata H (2003) Isolation and characterization of novel tachykinins from the posterior salivary gland of the common octopus Octopus vulgaris. Peptides 24:35-43
-
(2003)
Peptides
, vol.24
, pp. 35-43
-
-
Kanda, A.1
Iwakoshi-Ukena, E.2
Takuwa-Kuroda, K.3
Minakata, H.4
-
22
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
19247286 10.1038/nprot.2009.2 1:CAS:528:DC%2BD1MXivF2itbs%3D
-
Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4:363-371
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
23
-
-
0034736505
-
Adaptive evolution of animal toxin multigene families
-
11164036 10.1016/S0378-1119(00)00490-X 1:CAS:528:DC%2BD3MXmvF2msA%3D%3D
-
Kordis D, Gubensek F (2000) Adaptive evolution of animal toxin multigene families. Gene 261:43-52
-
(2000)
Gene
, vol.261
, pp. 43-52
-
-
Kordis, D.1
Gubensek, F.2
-
25
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
16818476 10.1093/molbev/msl051
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD (2006) Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol 23:1891-1901
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1891-1901
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.5
-
26
-
-
80155187383
-
A random effects branch-site model for detecting episodic diversifying selection
-
21670087 10.1093/molbev/msr125 1:CAS:528:DC%2BC3MXhtlyqsbfK
-
Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, Scheffler K (2011) A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol 28:3033-3043
-
(2011)
Mol Biol Evol
, vol.28
, pp. 3033-3043
-
-
Kosakovsky Pond, S.L.1
Murrell, B.2
Fourment, M.3
Frost, S.D.4
Delport, W.5
Scheffler, K.6
-
27
-
-
0141696888
-
Notizie biologiche riguardanti specialmente il periodo di maturita sessuale degli animali del Golfo di Napoli
-
Lo Bianco S (1888) Notizie biologiche riguardanti specialmente il periodo di maturita sessuale degli animali del Golfo di Napoli. Mitth Zool Stat Neapel 8:385-440
-
(1888)
Mitth Zool Stat Neapel
, vol.8
, pp. 385-440
-
-
Lo Bianco, S.1
-
28
-
-
85008124122
-
Participation in digestion by the proteolytic enzymes of the posterior salivary gland in octopus-II Isolation and purification of the proteolytic enzymes from the posterior salivary gland
-
10.2331/suisan.40.601 1:CAS:528:DyaE2cXltlejuro%3D
-
Morishita T (1974) Participation in digestion by the proteolytic enzymes of the posterior salivary gland in octopus-II Isolation and purification of the proteolytic enzymes from the posterior salivary gland. Bull Jpn Soc Sci Fish 40:601-607
-
(1974)
Bull Jpn Soc Sci Fish
, vol.40
, pp. 601-607
-
-
Morishita, T.1
-
29
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
9539414 1:CAS:528:DyaK1cXks1eitr8%3D
-
Nielsen R, Yang Z (1998) Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
30
-
-
0036183042
-
The effect of recombination on the accuracy of phylogeny estimation
-
11847565 1:CAS:528:DC%2BD38XhsFKks78%3D
-
Posada D, Crandall KA (2002) The effect of recombination on the accuracy of phylogeny estimation. J Mol Evol 54:396-402
-
(2002)
J Mol Evol
, vol.54
, pp. 396-402
-
-
Posada, D.1
Crandall, K.A.2
-
31
-
-
84877806577
-
Osservazioni sulla ialuronidasi delle ghiandole salivari enteriorie posteriori degli Octopodi
-
1:CAS:528:DyaG3sXjvVKhsQ%3D%3D
-
Romanini MG (1952) Osservazioni sulla ialuronidasi delle ghiandole salivari enteriorie posteriori degli Octopodi. Pubbl Staz Zool Napo 23:251-270
-
(1952)
Pubbl Staz Zool Napo
, vol.23
, pp. 251-270
-
-
Romanini, M.G.1
-
32
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
12912839 10.1093/bioinformatics/btg180 1:CAS:528:DC%2BD3sXntlKms7k%3D
-
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
33
-
-
50949129142
-
Purification and molecular cloning of SE-cephalotoxin, a novel proteinaceous toxin from the posterior salivary gland of cuttlefish Sepia esculenta
-
18694775 10.1016/j.toxicon.2008.07.007 1:CAS:528:DC%2BD1cXhtFSqsrjE
-
Ueda A, Nagai H, Ishida M, Nagashima Y, Shiomi K (2008) Purification and molecular cloning of SE-cephalotoxin, a novel proteinaceous toxin from the posterior salivary gland of cuttlefish Sepia esculenta. Toxicon 52:574-581
-
(2008)
Toxicon
, vol.52
, pp. 574-581
-
-
Ueda, A.1
Nagai, H.2
Ishida, M.3
Nagashima, Y.4
Shiomi, K.5
-
34
-
-
77955499563
-
Genetic identification of Southern Ocean octopod samples using mtCOI
-
10.1016/j.crvi.2010.02.002 1:CAS:528:DC%2BC3cXlvVWntb8%3D
-
Undheim EAB, Norman JA, Thoen HH, Fry BG (2010) Genetic identification of Southern Ocean octopod samples using mtCOI. CR Biol 333:395-404
-
(2010)
CR Biol
, vol.333
, pp. 395-404
-
-
Undheim, E.A.B.1
Norman, J.A.2
Thoen, H.H.3
Fry, B.G.4
-
35
-
-
77951610835
-
Positions under positive selection - Key for selectivity and potency of scorpion alpha-toxins
-
20018978 10.1093/molbev/msp310 1:CAS:528:DC%2BC3cXlt1Glu78%3D
-
Weinberger H, Moran Y, Gordon D, Turkov M, Kahn R, Gurevitz M (2010) Positions under positive selection - key for selectivity and potency of scorpion alpha-toxins. Mol Biol Evol 27:1025-1034
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1025-1034
-
-
Weinberger, H.1
Moran, Y.2
Gordon, D.3
Turkov, M.4
Kahn, R.5
Gurevitz, M.6
-
36
-
-
84857049782
-
Venom evolution through gene duplications
-
22285376 10.1016/j.gene.2012.01.009 1:CAS:528:DC%2BC38XhsFSntr0%3D
-
Wong ESW, Belov K (2012) Venom evolution through gene duplications. Gene 496:1-7
-
(2012)
Gene
, vol.496
, pp. 1-7
-
-
Wong, E.S.W.1
Belov, K.2
-
37
-
-
0037461034
-
TreeSAAP: Selection on amino acid properties using phylogenetic trees
-
12651734 10.1093/bioinformatics/btg043 1:CAS:528:DC%2BD3sXjtlOksLo%3D
-
Woolley S, Johnson J, Smith MJ, Crandall KA, McClellan DA (2003) TreeSAAP: selection on amino acid properties using phylogenetic trees. Bioinformatics 19:671-672
-
(2003)
Bioinformatics
, vol.19
, pp. 671-672
-
-
Woolley, S.1
Johnson, J.2
Smith, M.J.3
Crandall, K.A.4
McClellan, D.A.5
-
38
-
-
0029970097
-
Maximum-likelihood models for combined analyses of multiple sequence data
-
8662011 10.1007/BF02352289 1:CAS:528:DyaK28XjvVajsL0%3D
-
Yang Z (1996) Maximum-likelihood models for combined analyses of multiple sequence data. J Mol Evol 42:587-596
-
(1996)
J Mol Evol
, vol.42
, pp. 587-596
-
-
Yang, Z.1
-
39
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
9580986 10.1093/oxfordjournals.molbev.a025957 1:CAS:528: DyaK1cXislensL4%3D
-
Yang Z (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 15:568-573
-
(1998)
Mol Biol Evol
, vol.15
, pp. 568-573
-
-
Yang, Z.1
-
40
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
17483113 10.1093/molbev/msm088 1:CAS:528:DC%2BD2sXpsVGrs7c%3D
-
Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
41
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
15689528 10.1093/molbev/msi097 1:CAS:528:DC%2BD2MXjtFaisbk%3D
-
Yang Z, Wong WSW, Nielsen R (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 22:1107-1118
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
|