메뉴 건너뛰기




Volumn 38, Issue 3, 2013, Pages 431-443

Methacarn as a whole brain fixative for gene and protein expression analyses of specific brain regions in rats

Author keywords

Methacarn; Microarray analysis; Proteome analysis; Specific brain region; Tissue sampling

Indexed keywords

ACETONE; ACTIN RELATED PROTEIN 3; ALPHA CASEIN; ALPHA ENOLASE; CHLOROFORM; FIXATIVE; MESSENGER RNA; METHACARN; METHANOL; PHOSPHOGLYCERATE MUTASE; POLYPEPTIDE; TRIOSEPHOSPHATE ISOMERASE; UNCLASSIFIED DRUG; WATER;

EID: 84877780865     PISSN: 03881350     EISSN: 18803989     Source Type: Journal    
DOI: 10.2131/jts.38.431     Document Type: Article
Times cited : (46)

References (33)
  • 1
    • 0018650478 scopus 로고
    • Diagnostic applications of an immunoperoxidase method in hematopathology
    • Banks, P.M. (1979): Diagnostic applications of an immunoperoxidase method in hematopathology. J. Histochem. Cytochem., 27, 1192-1194.
    • (1979) J. Histochem. Cytochem , vol.27 , pp. 1192-1194
    • Banks, P.M.1
  • 3
    • 79958818350 scopus 로고    scopus 로고
    • Formalin fixation at low temperature better preserves nucleic acid integrity
    • Bussolati, G., Annaratone, L., Medico, E., D'Armento G. and Sapino A, (2011): Formalin fixation at low temperature better preserves nucleic acid integrity. PLoS One, 6, e21043.
    • (2011) PLoS One , vol.6
    • Bussolati, G.1    Annaratone, L.2    Medico, E.3    D'Armento, G.4    Sapino, A.5
  • 5
    • 33744535019 scopus 로고    scopus 로고
    • RCL2, a new fixative, preserves morphology and nucleic acid integrity in paraffin-embedded breast carcinoma and microdissected breast tumor cells
    • Delfour, C., Roger, P., Bret, C., Berthe, M.L., Rochaix, P., Kalfa, N., Raynaud, P., Bibeau, F., Maudelonde, T. and Boulle, N. (2006): RCL2, a new fixative, preserves morphology and nucleic acid integrity in paraffin-embedded breast carcinoma and microdissected breast tumor cells. J. Mol. Diagn., 8, 157-169.
    • (2006) J. Mol. Diagn , vol.8 , pp. 157-169
    • Delfour, C.1    Roger, P.2    Bret, C.3    Berthe, M.L.4    Rochaix, P.5    Kalfa, N.6    Raynaud, P.7    Bibeau, F.8    Maudelonde, T.9    Boulle, N.10
  • 6
    • 1542406346 scopus 로고    scopus 로고
    • Preparation of human heart for laser microdissection and proteomics
    • De Souza, A.I., McGregor, E., Dunn, M.J. and Rose, M.L. (2004): Preparation of human heart for laser microdissection and proteomics. Proteomics, 4, 578-586.
    • (2004) Proteomics , vol.4 , pp. 578-586
    • de Souza, A.I.1    McGregor, E.2    Dunn, M.J.3    Rose, M.L.4
  • 7
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.K., McCormack, A.L. and Yates J.R.3rd. (1994): An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom., 11, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom , vol.11 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 8
    • 50249102857 scopus 로고    scopus 로고
    • RNA expression analysis from formalin fixed paraffin embedded tissues
    • Farragher, S.M., Tanney, A., Kennedy, R.D. and Paul Harkin, D. (2008): RNA expression analysis from formalin fixed paraffin embedded tissues. Histochem. Cell Biol., 130, 435-445.
    • (2008) Histochem. Cell Biol , vol.130 , pp. 435-445
    • Farragher, S.M.1    Tanney, A.2    Kennedy, R.D.3    Paul Harkin, D.4
  • 9
    • 0027399391 scopus 로고
    • An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissues by PCR
    • Finke, J., Fritzen, R., Ternes, P., Lange, W. and Dölken G. (1993): An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissues by PCR. Biotechniques, 14, 448-453.
    • (1993) Biotechniques , vol.14 , pp. 448-453
    • Finke, J.1    Fritzen, R.2    Ternes, P.3    Lange, W.4    Dölken, G.5
  • 10
    • 84861662561 scopus 로고    scopus 로고
    • Increased cellular distribution of vimentin and Ret in the cingulum induced by developmental hypothyroidism in rat offspring maternally exposed to anti-thyroid agents
    • Fujimoto, H., Woo, G.H., Inoue, K., Igarashi, K., Kanno, J., Hirose, M., Nishikawa, A. and Shibutani, M. (2012): Increased cellular distribution of vimentin and Ret in the cingulum induced by developmental hypothyroidism in rat offspring maternally exposed to anti-thyroid agents. Reprod. Toxicol., 34, 93-100.
    • (2012) Reprod. Toxicol , vol.34 , pp. 93-100
    • Fujimoto, H.1    Woo, G.H.2    Inoue, K.3    Igarashi, K.4    Kanno, J.5    Hirose, M.6    Nishikawa, A.7    Shibutani, M.8
  • 11
    • 0033022067 scopus 로고    scopus 로고
    • Effects of fixation on RNA extraction and amplification from laser capture microdissected tissue
    • Goldsworthy, S.M., Stockton, P.S., Trempus, C.S., Foley, J.F. and Maronpot, R.R. (1999): Effects of fixation on RNA extraction and amplification from laser capture microdissected tissue. Mol. Carcinog., 25, 86-91.
    • (1999) Mol. Carcinog , vol.25 , pp. 86-91
    • Goldsworthy, S.M.1    Stockton, P.S.2    Trempus, C.S.3    Foley, J.F.4    Maronpot, R.R.5
  • 12
    • 27144452891 scopus 로고    scopus 로고
    • Systems toxicology: Applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology
    • Heijne, W.H., Kienhuis, A.S., van Ommen, B., Stierum, R.H. and Groten, J.P. (2005): Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology. Expert Rev. Proteomics, 5, 767-780.
    • (2005) Expert Rev. Proteomics , vol.5 , pp. 767-780
    • Heijne, W.H.1    Kienhuis, A.S.2    van Ommen, B.3    Stierum, R.H.4    Groten, J.P.5
  • 14
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann, M. and Wilm, M. (1994): Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem., 66, 4390-4399.
    • (1994) Anal. Chem , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 15
    • 0021922996 scopus 로고
    • Improved immunohistochemical localization of tissue antigens using modified methacarn fixation
    • Mitchell, D., Ibrahim, S. and Gusterson, B.A. (1985): Improved immunohistochemical localization of tissue antigens using modified methacarn fixation. J. Histochem. Cytochem., 33, 491-495.
    • (1985) J. Histochem. Cytochem , vol.33 , pp. 491-495
    • Mitchell, D.1    Ibrahim, S.2    Gusterson, B.A.3
  • 17
    • 0019600109 scopus 로고
    • Effects of different tissue processing methods on the immunohistochemical localization of kallikrein in the pancreas
    • Orstavik, T.B., Brandtzaeg, P., Nustad, K. and Pierce, J.V. (1981): Effects of different tissue processing methods on the immunohistochemical localization of kallikrein in the pancreas. J. Histochem. Cytochem., 29, 985-988.
    • (1981) J. Histochem. Cytochem , vol.29 , pp. 985-988
    • Orstavik, T.B.1    Brandtzaeg, P.2    Nustad, K.3    Pierce, J.V.4
  • 18
    • 12944269065 scopus 로고
    • Rapid identification of proteins by peptide-mass fingerprinting
    • Pappin, D.J., Hojrup, P. and Bleasby, A.J. (1993): Rapid identification of proteins by peptide-mass fingerprinting. Curr. Biol., 3, 327-332.
    • (1993) Curr. Biol , vol.3 , pp. 327-332
    • Pappin, D.J.1    Hojrup, P.2    Bleasby, A.J.3
  • 19
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N., Pappin, D.J., Creasy, D.M. and Cottrell, J.S. (1999): Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 20
    • 0014713238 scopus 로고
    • Methacarn (methanol-Carnoy) fixation. Practical and theoretical considerations
    • Puchtler, H., Waldrop, F.S., Meloan, S.N., Terry, M.S. and Conner, H.M. (1970): Methacarn (methanol-Carnoy) fixation. Practical and theoretical considerations. Histochemie, 21, 97-116.
    • (1970) Histochemie , vol.21 , pp. 97-116
    • Puchtler, H.1    Waldrop, F.S.2    Meloan, S.N.3    Terry, M.S.4    Conner, H.M.5
  • 21
    • 0019305533 scopus 로고
    • Immunohistochemistry of epithelial cell markers in normal and pathological colon mucosa. Comparison of results based on routine formalin- and cold ethanol-fixation methods
    • Rognum, T.O., Brandtzaeg, P., Orjasaeter, H. and Fausa, O. (1980): Immunohistochemistry of epithelial cell markers in normal and pathological colon mucosa. Comparison of results based on routine formalin- and cold ethanol-fixation methods. Histochemistry, 67, 7-21.
    • (1980) Histochemistry , vol.67 , pp. 7-21
    • Rognum, T.O.1    Brandtzaeg, P.2    Orjasaeter, H.3    Fausa, O.4
  • 22
    • 77649296318 scopus 로고    scopus 로고
    • Gene expression profiling and cellular distribution of molecules with altered expression in the hippocampal CA1 region after developmental exposure to anti-thyroid agents in rats
    • Saegusa, Y., Woo, G.H., Fujimoto, H., Inoue, K., Takahashi, M., Hirose, M., Igarashi, K., Kanno, J., Mitsumori, K., Nishikawa, A. and Shibutani, M. (2010): Gene expression profiling and cellular distribution of molecules with altered expression in the hippocampal CA1 region after developmental exposure to anti-thyroid agents in rats. J. Vet. Med. Sci., 72, 187-195.
    • (2010) J. Vet. Med. Sci , vol.72 , pp. 187-195
    • Saegusa, Y.1    Woo, G.H.2    Fujimoto, H.3    Inoue, K.4    Takahashi, M.5    Hirose, M.6    Igarashi, K.7    Kanno, J.8    Mitsumori, K.9    Nishikawa, A.10    Shibutani, M.11
  • 23
    • 34548623044 scopus 로고    scopus 로고
    • Hypothalamus region-specific global gene expression profiling in early stages of central endocrine disruption in rat neonates injected with estradiol benzoate or flutamide
    • Shibutani, M., Lee, K.Y., Igarashi, K., Woo, G.H., Inoue, K., Nishimura, T. and Hirose, M. (2007): Hypothalamus region-specific global gene expression profiling in early stages of central endocrine disruption in rat neonates injected with estradiol benzoate or flutamide. Dev. Neurobiol., 67, 253-269.
    • (2007) Dev. Neurobiol , vol.67 , pp. 253-269
    • Shibutani, M.1    Lee, K.Y.2    Igarashi, K.3    Woo, G.H.4    Inoue, K.5    Nishimura, T.6    Hirose, M.7
  • 24
    • 0036407162 scopus 로고    scopus 로고
    • Methacarn: A fixation tool for multipurpose genetic analysis from paraffin-embedded tissues
    • Shibutani, M. and Uneyama, C. (2002): Methacarn: a fixation tool for multipurpose genetic analysis from paraffin-embedded tissues. Methods Enzymol., 356, 114-125.
    • (2002) Methods Enzymol , vol.356 , pp. 114-125
    • Shibutani, M.1    Uneyama, C.2
  • 25
    • 0034049097 scopus 로고    scopus 로고
    • Methacarn fixation: A novel tool for analysis of gene expressions in paraffin-embedded tissue specimens
    • Shibutani, M., Uneyama, C., Miyazaki, K., Toyoda, K. and Hirose, M. (2000): Methacarn fixation: a novel tool for analysis of gene expressions in paraffin-embedded tissue specimens. Lab. Invest., 80, 199-208.
    • (2000) Lab. Invest , vol.80 , pp. 199-208
    • Shibutani, M.1    Uneyama, C.2    Miyazaki, K.3    Toyoda, K.4    Hirose, M.5
  • 26
    • 0036898005 scopus 로고    scopus 로고
    • Effect of fixatives and tissue processing on the content and integrity of nucleic acids
    • Srinivasan, M., Sedmak, D. and Jewell, S. (2002): Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am. J. Pathol., 161, 1961-1971.
    • (2002) Am. J. Pathol , vol.161 , pp. 1961-1971
    • Srinivasan, M.1    Sedmak, D.2    Jewell, S.3
  • 27
    • 0026076274 scopus 로고
    • RNA extracted from paraffinembedded human tissues is amenable to analysis by PCR amplification
    • Stanta, G. and Schneider, C. (1991): RNA extracted from paraffinembedded human tissues is amenable to analysis by PCR amplification. Biotechniques, 11, 304-308.
    • (1991) Biotechniques , vol.11 , pp. 304-308
    • Stanta, G.1    Schneider, C.2
  • 28
    • 3042741996 scopus 로고    scopus 로고
    • Microdissected region-specific gene expression analysis with methacarn-fixed, paraffin-embedded tissues by real-time RT-PCR
    • Takagi, H., Shibutani, M., Kato, N., Fujita, H., Lee, K.Y., Takigami, S., Mitsumori, K. and Hirose, M. (2004): Microdissected region-specific gene expression analysis with methacarn-fixed, paraffin-embedded tissues by real-time RT-PCR. J. Histochem. Cytochem., 52, 903-913.
    • (2004) J. Histochem. Cytochem , vol.52 , pp. 903-913
    • Takagi, H.1    Shibutani, M.2    Kato, N.3    Fujita, H.4    Lee, K.Y.5    Takigami, S.6    Mitsumori, K.7    Hirose, M.8
  • 30
    • 36348997057 scopus 로고    scopus 로고
    • Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
    • Thompson, K.L., Pine, P.S., Rosenzweig, B.A., Turpaz, Y. and Retief, J. (2007): Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. BMC Biotechnol, 7, 57.
    • (2007) BMC Biotechnol , vol.7 , pp. 57
    • Thompson, K.L.1    Pine, P.S.2    Rosenzweig, B.A.3    Turpaz, Y.4    Retief, J.5
  • 31
    • 0036735310 scopus 로고    scopus 로고
    • Methacarn fixation for genomic DNA analysis in microdissected, paraffin-embedded tissue specimens
    • Uneyama, C., Shibutani, M., Masutomi, N., Takagi, H. and Hirose, M. (2002): Methacarn fixation for genomic DNA analysis in microdissected, paraffin-embedded tissue specimens. J. Histochem. Cytochem., 50, 1237-1245.
    • (2002) J. Histochem. Cytochem , vol.50 , pp. 1237-1245
    • Uneyama, C.1    Shibutani, M.2    Masutomi, N.3    Takagi, H.4    Hirose, M.5
  • 32
    • 67449084327 scopus 로고    scopus 로고
    • Cellular distributions of molecules with altered expression specific to thyroid proliferative lesions developing in a rat thyroid carcinogenesis model
    • Woo, G.H., Takahashi, M., Inoue, K., Fujimoto, H., Igarashi, K., Kanno, J., Hirose, M., Nishikawa, A. and Shibutani, M. (2009): Cellular distributions of molecules with altered expression specific to thyroid proliferative lesions developing in a rat thyroid carcinogenesis model. Cancer Sci., 100, 617-625.
    • (2009) Cancer Sci , vol.100 , pp. 617-625
    • Woo, G.H.1    Takahashi, M.2    Inoue, K.3    Fujimoto, H.4    Igarashi, K.5    Kanno, J.6    Hirose, M.7    Nishikawa, A.8    Shibutani, M.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.