-
1
-
-
0037322205
-
Towards quantitative mRNA analysis in paraffin-embedded tissues using real-time reverse transcriptase-polymerase chain reaction
-
Abrahamsen H., Steiniche T., Nexo E., Hamilton-Dutoit S.J., and Sorensen B.S. Towards quantitative mRNA analysis in paraffin-embedded tissues using real-time reverse transcriptase-polymerase chain reaction. J. Mol. Diagn. 5 (2003) 34-41
-
(2003)
J. Mol. Diagn.
, vol.5
, pp. 34-41
-
-
Abrahamsen, H.1
Steiniche, T.2
Nexo, E.3
Hamilton-Dutoit, S.J.4
Sorensen, B.S.5
-
2
-
-
2142702838
-
Gene expression analysis by real-time reverse transcription polymerase chain reaction: influence of tissue handling
-
Almeida A., Thiery J.P., Magdelénat H., and Radvanyi F. Gene expression analysis by real-time reverse transcription polymerase chain reaction: influence of tissue handling. Anal. Biochem. 328 (2004) 101-108
-
(2004)
Anal. Biochem.
, vol.328
, pp. 101-108
-
-
Almeida, A.1
Thiery, J.P.2
Magdelénat, H.3
Radvanyi, F.4
-
3
-
-
27144468030
-
Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization
-
Antonov J., Goldstein D.R., Oberli A., Baltzer A., Pirotta M., Fleischmann A., Altermatt H.J., and Jaggi R. Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization. Lab. Invest. 85 (2005) 1040-1050
-
(2005)
Lab. Invest.
, vol.85
, pp. 1040-1050
-
-
Antonov, J.1
Goldstein, D.R.2
Oberli, A.3
Baltzer, A.4
Pirotta, M.5
Fleischmann, A.6
Altermatt, H.J.7
Jaggi, R.8
-
4
-
-
0017380530
-
Genetic and cytogenetical effects of formaldehyde and related compounds
-
Auerbach C., Moutschen-Dahmen M., and Moutschen J. Genetic and cytogenetical effects of formaldehyde and related compounds. Mutat. Res. 39 (1977) 317-362
-
(1977)
Mutat. Res.
, vol.39
, pp. 317-362
-
-
Auerbach, C.1
Moutschen-Dahmen, M.2
Moutschen, J.3
-
5
-
-
0022922193
-
The influence of protease digestion and duration of fixation on the immunostaining of keratins
-
Battifora H., and Kopinski M. The influence of protease digestion and duration of fixation on the immunostaining of keratins. J. Histochem. Cytochem. 34 (1986) 1095-1100
-
(1986)
J. Histochem. Cytochem.
, vol.34
, pp. 1095-1100
-
-
Battifora, H.1
Kopinski, M.2
-
6
-
-
33947535404
-
Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue
-
Coudry R.A., Meireles S.I., Stoyanova R., Cooper H.S., Carpino A., Wang X., Engstrom P.F., and Clapper M.L. Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue. J. Mol. Diagnostics 9 (2007) 70-79
-
(2007)
J. Mol. Diagnostics
, vol.9
, pp. 70-79
-
-
Coudry, R.A.1
Meireles, S.I.2
Stoyanova, R.3
Cooper, H.S.4
Carpino, A.5
Wang, X.6
Engstrom, P.F.7
Clapper, M.L.8
-
7
-
-
33644518208
-
Assessment of fixatives, fixation, and tissue processing on morphology and RNA integrity
-
Cox M.L., Schray C.L., Luster C.N., Stewart Z.S., Korytko P.J., Khan K.N.M., Paulauskis J.D., and Dunstan R.W. Assessment of fixatives, fixation, and tissue processing on morphology and RNA integrity. Exp. Mol. Pathol. 80 (2006) 183-191
-
(2006)
Exp. Mol. Pathol.
, vol.80
, pp. 183-191
-
-
Cox, M.L.1
Schray, C.L.2
Luster, C.N.3
Stewart, Z.S.4
Korytko, P.J.5
Khan, K.N.M.6
Paulauskis, J.D.7
Dunstan, R.W.8
-
8
-
-
1542469713
-
Measurement of gene expression in archival paraffin-embedded tissues
-
Cronin M., Pho M., Dutta D., Stephans J.C., Shak S., Kiefer M.C., Esteban J.M., and Baker J.B. Measurement of gene expression in archival paraffin-embedded tissues. Am. J. Pathol. 164 (2004) 35-42
-
(2004)
Am. J. Pathol.
, vol.164
, pp. 35-42
-
-
Cronin, M.1
Pho, M.2
Dutta, D.3
Stephans, J.C.4
Shak, S.5
Kiefer, M.C.6
Esteban, J.M.7
Baker, J.B.8
-
9
-
-
0036841485
-
Changes in differential gene expression because of warm ischemia time of radial prostatectomy specimens
-
Dash A., Maine I.P., Varambally S., Shen R., Chinnaiyan A.M., and Rubin M.A. Changes in differential gene expression because of warm ischemia time of radial prostatectomy specimens. Am. J. Pathol. 151 (2002) 1743-1748
-
(2002)
Am. J. Pathol.
, vol.151
, pp. 1743-1748
-
-
Dash, A.1
Maine, I.P.2
Varambally, S.3
Shen, R.4
Chinnaiyan, A.M.5
Rubin, M.A.6
-
10
-
-
0015543341
-
Reactions of nucleic acids and nucleoproteins with formaldehyde
-
Feldman M.Y. Reactions of nucleic acids and nucleoproteins with formaldehyde. Prog. Nucleic Acid Res. Mol. Bio. 13 (1973) 1-49
-
(1973)
Prog. Nucleic Acid Res. Mol. Bio.
, vol.13
, pp. 1-49
-
-
Feldman, M.Y.1
-
11
-
-
0032926691
-
Immuno-LCM: laser capture microdissection of immunostained frozen sections for mRNA analysis
-
Fend F., Emmert-Buck M.R., Chuaqui R., Cole K., Lee J., Liotta L.A., and Raffeld M. Immuno-LCM: laser capture microdissection of immunostained frozen sections for mRNA analysis. Am. J. Pathol. 154 (1999) 61-66
-
(1999)
Am. J. Pathol.
, vol.154
, pp. 61-66
-
-
Fend, F.1
Emmert-Buck, M.R.2
Chuaqui, R.3
Cole, K.4
Lee, J.5
Liotta, L.A.6
Raffeld, M.7
-
13
-
-
3543053392
-
Combined histochemical staining, RNA amplification, regional, and single cell cDNA analysis within the hippocampus
-
Ginsberg S.D., and Che S. Combined histochemical staining, RNA amplification, regional, and single cell cDNA analysis within the hippocampus. Lab. Invest. 84 (2004) 952-962
-
(2004)
Lab. Invest.
, vol.84
, pp. 952-962
-
-
Ginsberg, S.D.1
Che, S.2
-
14
-
-
9244238712
-
The influence of immunohistochemistry on mRNA recovery from microdissected frozen and formalin-fixed, paraffin-embedded sections
-
Gjerdrum L.M., Abrahamsen H.N., Villegas B., Sorensen B.S., Schmidt H., and Hamilton-Dutoit S.J. The influence of immunohistochemistry on mRNA recovery from microdissected frozen and formalin-fixed, paraffin-embedded sections. Diagn. Mol. Pathol. 13 (2004) 224-233
-
(2004)
Diagn. Mol. Pathol.
, vol.13
, pp. 224-233
-
-
Gjerdrum, L.M.1
Abrahamsen, H.N.2
Villegas, B.3
Sorensen, B.S.4
Schmidt, H.5
Hamilton-Dutoit, S.J.6
-
15
-
-
33745412699
-
Improved RT-PCR amplification for molecular analyses with long-term preserved formalin-fixed, paraffin-embedded tissue specimens
-
Hamatani K., Eguchi H., Takahashi K., Koyama K., Mukai M., Ito R., Taga M., Yasui W., and Nakachi K. Improved RT-PCR amplification for molecular analyses with long-term preserved formalin-fixed, paraffin-embedded tissue specimens. J. Histochem. Cytochem. 54 (2006) 773-780
-
(2006)
J. Histochem. Cytochem.
, vol.54
, pp. 773-780
-
-
Hamatani, K.1
Eguchi, H.2
Takahashi, K.3
Koyama, K.4
Mukai, M.5
Ito, R.6
Taga, M.7
Yasui, W.8
Nakachi, K.9
-
16
-
-
0037021618
-
Degradation profile of mRNA in a dead rat body: basic semi-quantification study
-
Inoue H., Kimura A., and Tuji T. Degradation profile of mRNA in a dead rat body: basic semi-quantification study. Forensic Sci. Int. 130 (2002) 127-132
-
(2002)
Forensic Sci. Int.
, vol.130
, pp. 127-132
-
-
Inoue, H.1
Kimura, A.2
Tuji, T.3
-
17
-
-
33646135785
-
Combining laser capture microdissection with quantitative real-time PCR: effects of tissue manipulation on RNA quality and gene expression
-
Kerman I.A., Buck B.J., Evans S.J., Akil H., and Watson S.J. Combining laser capture microdissection with quantitative real-time PCR: effects of tissue manipulation on RNA quality and gene expression. J. Neurosci. Methods 153 (2006) 71-85
-
(2006)
J. Neurosci. Methods
, vol.153
, pp. 71-85
-
-
Kerman, I.A.1
Buck, B.J.2
Evans, S.J.3
Akil, H.4
Watson, S.J.5
-
18
-
-
23444456437
-
Effects of RNA degradation on gene expression analysis of human postmortem tissues
-
Lee J., Hever A., Willhite D., Zlotnik A., and Hevezi P. Effects of RNA degradation on gene expression analysis of human postmortem tissues. FASEB J. 19 (2005) 1356-1358
-
(2005)
FASEB J.
, vol.19
, pp. 1356-1358
-
-
Lee, J.1
Hever, A.2
Willhite, D.3
Zlotnik, A.4
Hevezi, P.5
-
19
-
-
0034812285
-
Unlocking the archive: gene expression in paraffin-embedded tissue
-
Lewis F., Maughan N.J., Smith V., and Hillan K.P.Q. Unlocking the archive: gene expression in paraffin-embedded tissue. J. Pathol. 195 (2001) 66-71
-
(2001)
J. Pathol.
, vol.195
, pp. 66-71
-
-
Lewis, F.1
Maughan, N.J.2
Smith, V.3
Hillan, K.P.Q.4
-
20
-
-
1542285104
-
Western blot analysis of a limited number of cells: a valuable adjunct to proteome analysis of paraffin wax-embedded, alcohol-fixed tissue after laser capture microdissection
-
Martinet W., Abbeloos V., Van Acker N., De Meyer G.R., Herman A.G., and Kockx M.M. Western blot analysis of a limited number of cells: a valuable adjunct to proteome analysis of paraffin wax-embedded, alcohol-fixed tissue after laser capture microdissection. J. Pathol. 202 (2004) 382-388
-
(2004)
J. Pathol.
, vol.202
, pp. 382-388
-
-
Martinet, W.1
Abbeloos, V.2
Van Acker, N.3
De Meyer, G.R.4
Herman, A.G.5
Kockx, M.M.6
-
21
-
-
0033571272
-
Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
-
Masuda N., Ohnishi T., Kawamoto S., Moden M., and Okubo K. Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res. 27 (1999) 4436-4443
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4436-4443
-
-
Masuda, N.1
Ohnishi, T.2
Kawamoto, S.3
Moden, M.4
Okubo, K.5
-
22
-
-
30944440066
-
Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens
-
Micke P., Ohshima M., Tahmasebpoor S., Ren Z.-P., Östman A., Pontén F., and Botling J. Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens. Lab. Invest. 86 (2006) 202-211
-
(2006)
Lab. Invest.
, vol.86
, pp. 202-211
-
-
Micke, P.1
Ohshima, M.2
Tahmasebpoor, S.3
Ren, Z.-P.4
Östman, A.5
Pontén, F.6
Botling, J.7
-
23
-
-
0033850140
-
IF-LCM: laser capture microdissection of immunofluorescently defined cells for mRNA analysis
-
Murakami H., Liotta L., and Star R.A. IF-LCM: laser capture microdissection of immunofluorescently defined cells for mRNA analysis. Kidney Int. 8 (2000) 1346-1353
-
(2000)
Kidney Int.
, vol.8
, pp. 1346-1353
-
-
Murakami, H.1
Liotta, L.2
Star, R.A.3
-
24
-
-
0345568116
-
Influence of histochemical stains on quantitative gene expression analysis after laser-assisted microdissection
-
Okuducu A.F., Janzen V., Hahne J.C., Ko Y., and Wernert N. Influence of histochemical stains on quantitative gene expression analysis after laser-assisted microdissection. Int. J. Mol. Med. 11 (2003) 449-453
-
(2003)
Int. J. Mol. Med.
, vol.11
, pp. 449-453
-
-
Okuducu, A.F.1
Janzen, V.2
Hahne, J.C.3
Ko, Y.4
Wernert, N.5
-
25
-
-
0021946159
-
On the chemistry of formaldehyde fixation and its effects on immunohistochemical reactions
-
Puchtler H., and Meloan S.N. On the chemistry of formaldehyde fixation and its effects on immunohistochemical reactions. Histochemistry 82 (1985) 201-204
-
(1985)
Histochemistry
, vol.82
, pp. 201-204
-
-
Puchtler, H.1
Meloan, S.N.2
-
26
-
-
33750310042
-
Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples
-
Scicchitano M.S., Dalmas D.A., Bertiaux M.A., Anderson S.M., Turner L.R., Thomas R.A., Mirable R., and Boyce R.W. Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples. J. Histochem. Cytochem. 54 (2006) 1229-1237
-
(2006)
J. Histochem. Cytochem.
, vol.54
, pp. 1229-1237
-
-
Scicchitano, M.S.1
Dalmas, D.A.2
Bertiaux, M.A.3
Anderson, S.M.4
Turner, L.R.5
Thomas, R.A.6
Mirable, R.7
Boyce, R.W.8
-
27
-
-
0345168051
-
Moderate degradation does not preclude microarray analysis of small amounts of RNA
-
Schoor O., Weinschenk T., Hennenlotter J., Corvin S., Stenzl A., Rammemsee H.-G., and Stevanović S. Moderate degradation does not preclude microarray analysis of small amounts of RNA. BioTechniques 35 (2003) 1192-1201
-
(2003)
BioTechniques
, vol.35
, pp. 1192-1201
-
-
Schoor, O.1
Weinschenk, T.2
Hennenlotter, J.3
Corvin, S.4
Stenzl, A.5
Rammemsee, H.-G.6
Stevanović, S.7
-
28
-
-
33645241407
-
The TIN: an RNA integrity number for assigning integrity values to RNA measurements
-
10.1186/1471-2199-7-3
-
Schroeder A., Muller O., Stocker S., Salowsky R., Leiber M., Gassmann M., Lightfoot S., Menzel W., Granzow M., and Ragg T. The TIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol. Biol. 7 (2006) 10.1186/1471-2199-7-3
-
(2006)
BMC Mol. Biol.
, vol.7
-
-
Schroeder, A.1
Muller, O.2
Stocker, S.3
Salowsky, R.4
Leiber, M.5
Gassmann, M.6
Lightfoot, S.7
Menzel, W.8
Granzow, M.9
Ragg, T.10
-
29
-
-
0035009682
-
Antigen retrieval immunohistochemistry and molecular morphology in the year 2001
-
Shi S.-R., Cote R.J., and Taylor C.R. Antigen retrieval immunohistochemistry and molecular morphology in the year 2001. Appl. Immunohistochem. Mol. Morph 9 (2001) 107-116
-
(2001)
Appl. Immunohistochem. Mol. Morph
, vol.9
, pp. 107-116
-
-
Shi, S.-R.1
Cote, R.J.2
Taylor, C.R.3
-
30
-
-
0036407162
-
Methacarn: a fixation tool for multipurpose genetic analysis from paraffin-embedded tissues
-
Shibutani M., and Uneyama C. Methacarn: a fixation tool for multipurpose genetic analysis from paraffin-embedded tissues. Methods Enzymol. 356 (2002) 114-125
-
(2002)
Methods Enzymol.
, vol.356
, pp. 114-125
-
-
Shibutani, M.1
Uneyama, C.2
-
31
-
-
0035134463
-
Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue
-
Specht K., Richter T., Müller U., Walch A., Werner M., and Höfler H. Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue. Am. J. Pathol. 158 (2001) 419-429
-
(2001)
Am. J. Pathol.
, vol.158
, pp. 419-429
-
-
Specht, K.1
Richter, T.2
Müller, U.3
Walch, A.4
Werner, M.5
Höfler, H.6
-
32
-
-
2942617082
-
Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision
-
Spruessel A., Steimann G., Jung M., Lee S.A., Carr T., Fentz A.-K., Spangenberg J., Zornig C., Juhl H.H., and David K.A. Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision. BioTechniques. 36 (2004) 1030-1037
-
(2004)
BioTechniques.
, vol.36
, pp. 1030-1037
-
-
Spruessel, A.1
Steimann, G.2
Jung, M.3
Lee, S.A.4
Carr, T.5
Fentz, A.-K.6
Spangenberg, J.7
Zornig, C.8
Juhl, H.H.9
David, K.A.10
-
33
-
-
0036898005
-
Effect of fixatives and tissue processing on the content and integrity of nucleic acids
-
Srinivasan M., Sedmak D., and Jewell S. Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am. J. Pathol. 151 (2002) 1961-1971
-
(2002)
Am. J. Pathol.
, vol.151
, pp. 1961-1971
-
-
Srinivasan, M.1
Sedmak, D.2
Jewell, S.3
-
34
-
-
32944472275
-
Multiple gene expression analyses in paraffin-embedded tissues by Taqman low-density array
-
Steg A., Wang W., Blanquicett C., Grunda J.M., Eltoum I.A., Wang K., Buchsbaum D.J., Vickers S.M., Russo S., Diasio R.B., Frost A.R., LoBuglio A.F., Grizzle W.E., and Johnson M.R. Multiple gene expression analyses in paraffin-embedded tissues by Taqman low-density array. J. Mol. Diagnostics 8 (2006) 76-83
-
(2006)
J. Mol. Diagnostics
, vol.8
, pp. 76-83
-
-
Steg, A.1
Wang, W.2
Blanquicett, C.3
Grunda, J.M.4
Eltoum, I.A.5
Wang, K.6
Buchsbaum, D.J.7
Vickers, S.M.8
Russo, S.9
Diasio, R.B.10
Frost, A.R.11
LoBuglio, A.F.12
Grizzle, W.E.13
Johnson, M.R.14
-
35
-
-
33744513397
-
Validation of a novel ultra-short immunolabeling method for high-quality mRNA preservation in laser microdissection and real-time reverse transcriptase-polymerase chain reaction
-
von Smolinski D., Blessenohl M., Neubauer C., Kalies K., and Gebert A. Validation of a novel ultra-short immunolabeling method for high-quality mRNA preservation in laser microdissection and real-time reverse transcriptase-polymerase chain reaction. J Mol. Diagnostics 8 (2006) 246-253
-
(2006)
J Mol. Diagnostics
, vol.8
, pp. 246-253
-
-
von Smolinski, D.1
Blessenohl, M.2
Neubauer, C.3
Kalies, K.4
Gebert, A.5
-
36
-
-
0032755991
-
A high frequency of sequence alterations is due to formalin fixation of archival specimens
-
Williams C., Pontén F., Moberg C., Söderkvist P., Uhlén M., Pontén J., Sitbon G., and Lundeberg J. A high frequency of sequence alterations is due to formalin fixation of archival specimens. Am. J. Pathol. 155 (1999) 1467-1471
-
(1999)
Am. J. Pathol.
, vol.155
, pp. 1467-1471
-
-
Williams, C.1
Pontén, F.2
Moberg, C.3
Söderkvist, P.4
Uhlén, M.5
Pontén, J.6
Sitbon, G.7
Lundeberg, J.8
|