Analysis of the Transcriptome of Blowfly Chrysomya megacephala (Fabricius) Larvae in Responses to Different Edible Oils

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Zhang, Min ^a   Yu, Hao ^a   Yang, Yanyan ^a   Song, Chao ^a   Hu, Xinjun ^a   Zhang, Guren ^a  

^a SUN YAT SEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EDIBLE OIL; LARD OIL; SOYBEAN OIL; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ARTICLE; CALLIPHORIDAE; CHRYSOMYA MEGACEPHALA; CONTROLLED STUDY; DIGITAL GENE EXPRESSION PROFILING; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC DATABASE; LARVA; LIPID METABOLISM; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA SEQUENCE;

ANIMALS; DATABASES, GENETIC; DIETARY FATS; DIPTERA; GENE EXPRESSION PROFILING; GENES, INSECT; LARVA; MOLECULAR SEQUENCE ANNOTATION; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, RNA; SOYBEAN OIL;

EID: 84877768583     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0063168     Document Type: Article

References (46)

1. Martinez-Sanchez A, Marcos-Garcia MA, Rojo S, (2001) First collection of Chrysomya megacephala (Fabr.) in Europe (Diptera: Calliphoridae). Pan-Pac Entomol 77: 240-243.
2. Tomberlin JK, Reeves WK, Sheppard DC, (2001) First record of Chrysomya megacephala (Diptera: Calliphoridae) in Georiga, USA. Fla Entomol 84: 300-301.
3. Reigada C, Godoy WAC, (2005) Seasonal fecundity and body size in Chrysomya megacephala (Fabricius) (Diptera: Calliphoridae). Neotrop Entomol 34: 163-168.
4. Olea MS, Juri MJD, Centeno N, (2011) First report of Chrysomya.megacephala (Diptera: Calliphoridae) in northwestern Argentina. Fla Entomol 94: 345-346 doi:http://dx.doi.org/10.1653/024.094.0231.
5. Mahat NA, Jayaprakash PT, Zafarina Z, (2012) Malathion extraction from larvae of Chrysomya megacephala (Fabricius) (Diptera: Calliphoridae) for determining death due to malathion. Tropical Biomedicine 29 (1): 9-17.
6. Catts EP, Goff ML, (1992) Forensic entomology in criminal investigations. Annu Rev Entomol 37: 253-72.
7. Yang ST, Shiao SF, (2012) Oviposition preferences of two forensically important blow fly species, Chrysomya megacephala and C. rufifacies (Diptera: Calliphoridae), and implications for postmortem interval estimation. Journal of Medical Entomology 49 (2): 424-435 doi:10.1603/ME11133.
8. Sung IH, Lin MY, Chang CH, Cheng AS, Chen WS, (2006) Pollinators and their behaviors on mango flowers in southern Taiwan. Formos Entomol 26: 161-70.
9. Fougeron AS, Farine JP, Flaven-Pouchon J, Everaerts C, Ferveur JF, (2011) Fatty-acid preference changes during development in Drosophila melanogaster. PLoS ONE 6 (10): e26899 doi:10.1371/journal.pone.0026899.
10. Ujvari B, Wallman JF, Madsen T, Whelan M, Hulbert AJ, (2009) Experimental studies of blowfly (Calliphora stygia) longevity: A little dietary fat is beneficial but too much is detrimental. Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology 154: 383-388.
11. Hood-Nowotny R, Schwarzinger B, Schwarzinger C, Soliban S, Madakacherry O, et al. (2012) An analysis of diet quality, How it controls fatty acid profiles, isotope signatures and stoichiometry in the malaria mosquito Anopheles arabiensis. PLoS ONE 7 (10): e45222 doi:10.1371/journal.pone.0045222.
12. Carvalho M, Sampaio JL, Palm W, Brankatschk M, Eaton S, et al. (2012) Effects of diet and development on the Drosophila lipidome. Mol Syst Biol 8: 600 doi:10.1038/msb.2012.29.
13. Gonzalez MS, Brenner RR, (1999) Fatty acid Delta (9)-desaturation in the Triatoma infestans fat body: Response to food and trehalose administrations. LIPIDS 34 (11): 1199-1205 doi:10.1007/s11745-999-0472-7.
14. Batcabe JP, Howell JD, Blomquist GJ, Borgeson CE, (2000) Effects of developmental age, ambient temperature, and dietary alterations on Delta (12) desaturase activity in the house cricket, Acheta domesticus. Archives of Insect Biochemistry and Physiology 44 (3): 112-119.
15. Sing KW, Sofian-Azirun M, Tayyab S, (2012) Protein analysis of Chrysomya megacephala maggot meal. Animal Nutrition and Feed Technology 12 (1): 35-46.
16. Li ZX, Yang D, Huang ML, Hu XJ, Shen JG, et al. (2012) Chrysomya megacephala (Fabricius) larvae: A new biodiesel resource. Applied Energy 94: 349-354.
17. Ryan DM, Matthew B, Anthony F, Martin H, et al. (2008) Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing. Bio Techniques 45 (1): 81-94 doi:10.2144/000112900.
18. Metzker ML, (2010) Sequencing technologies-the next generation. Nat Rev Genet 11: 31-46 doi:10.1038/nrg2626.
19. Huang WC, Marth G, (2008) EagleView: A genome assembly viewer for next-generation sequencing technologies,. Genome Res 18: 1538-1543 doi:10.1101/gr.076067.108.
20. Liu G, Li W, Zheng P, Xu T, Chen L, et al. (2012) Transcriptomic analysis of 'Suli' pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq. BMC Genomics 13: 700.
21. Li SW, Yang H, Liu YF, Liao QR, Du J, et al. (2012) Transcriptome and gene expression analysis of the rice leaf folder, Cnaphalocrosis medinalis. PLoS ONE 7: e47401.
22. Li XJ, Yang H, Li GX, Zhang GH, Cheng J, et al. (2012) Transcriptome profile analysis of porcine adipose tissue by high-throughput sequencing. Anim Genet 43: 144-152.
23. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data: without a reference genome. Nature Biotechnology 29: 644-652 doi:10.1038/nbt.1883.
24. Iseli C, Jongeneel CV, Bucher P, (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol pp. 138-48.
25. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21 (18): 3674-6.
26. Ye J, Fang L, Zheng HK, Zhang HY, Chen J, et al. (2006) WEGO: a web tool for plotting GO annotations. Nucleic Acids Res 34 (Web Server issue): W293-7.
27. Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M, (2004) The KEGG resource for deciphering the genome. Nucleic acids research 32: D277-D280.
28. Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, et al. (2009) Next-generation tag sequencing for cancer gene expression profiling. Genome Res 19: 1825-1835.
29. 't Hoen PAC, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RHAM, et al. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 36 (21): e141.
30. Audic S, Claverie JM, (1997) The significance of digital gene expression profiles. Genome Res 7 (10): 986-95.
31. Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) method. Methods 25: 402-408.
32. Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 11: 400.
33. Xue J, Bao YY, Li BL, Cheng YB, Peng ZY, et al. (2010) Transcriptome analysis of the brown planthopper Nilaparvata lugens. PLoS ONE 5: e14233.
34. Karatolos N, Pauchet Y, Wilkinson P, Chauhan R, Denholm I, et al. (2011) Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes. BMC Genomics 12: 56.
35. Bai XD, Zhang W, Orantes L, Jun TH, Mittapalli O, et al. (2010) Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines. PLoS ONE 5: e11370.
36. Crawford JE, Guelbeogo WM, Sanou A, Traore A, Vernick KD, et al. (2010) De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology. PLoS ONE 5: e14202.
37. Benjamini Y, Yekutieli D, (2001) The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics 29: 1165-1188.
38. Arrese EL, Soulages JL, (2010) Insect fat body: energy, metabolism, and regulation. Annu Rev Entomol 55: 207-225.
39. Hanahan D, Weinberg RA, (2000) The hallmarks of cancer. Cell 100: 57-70.
40. Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, et al. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466: 720-726.
41. Bauerfeind SS, Fischer K, Hartstein S, Janowitz S, Martin-Creuzburg D, (2007) Effects of adult nutrition on female reproduction in a fruit-feeding butterfly: the role of fruit decay and dietary lipids. Journal of Insect Physiology 53: 964-973.
42. Baer B, Morgan ED, Schmid-Hempel P, (2001) A nonspecific fatty acid within the bumblebee mating plug prevents females from remating. Proceedings of the National Academy of Sciences of the United States of America 98: 3926-3928.
43. Ueyama M, Chertemps T, Labeur C, Wicker-Thomas C, (2005) Mutations in the desat1 gene reduces the production of courtship stimulatory pheromones through a marked effect on fatty acids in Drosophila melanogaster. Insect Biochemistry and Molecular Biology 35: 911-920.
44. Merkey AB, Wong CK, Hoshizaki DK, Gibbs AG, (2011) Energetics of metamorphosis in Drosophila melanogaster. Journal of Insect Physiology 57: 1437-1445.
45. Overgaard J, Tomcala A, Sorensen JG, Holmstrup M, Krogh PH, et al. (2008) Effects of acclimation temperature on thermal tolerance and membrane phospholipid composition in the fruit fly Drosophila melanogaster. Journal of Insect Physiology 54: 619-629.
46. Chyb S, Raghu P, Hardie RC, (1999) Polyunsaturated fatty acids activate the Drosophila light-sensitive channels TRP and TRPL. Nature 397: 255-259.