메뉴 건너뛰기




Volumn 9, Issue 3, 2013, Pages 867-877

The chloroplast genome sequence of Syzygium cumini (L.) and its relationship with other angiosperms

Author keywords

Eucalyptus; Myrtaceae; Next generation sequencing; Plastid

Indexed keywords

DICOTYLEDONEAE; EUCALYPTUS; MAGNOLIOPHYTA; MYRTACEAE; SYZYGIUM CUMINI;

EID: 84877717212     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-013-0604-1     Document Type: Article
Times cited : (19)

References (40)
  • 2
    • 33645712119 scopus 로고    scopus 로고
    • Molecular systematics of Syzygium and allied genera (Myrtaceae): evidence from the chloroplast genome
    • Biffin E, Craven LA, Crisp MD, Gadek PA (2006) Molecular systematics of Syzygium and allied genera (Myrtaceae): evidence from the chloroplast genome. Taxon 55: 79-94.
    • (2006) Taxon , vol.55 , pp. 79-94
    • Biffin, E.1    Craven, L.A.2    Crisp, M.D.3    Gadek, P.A.4
  • 3
    • 40749117710 scopus 로고    scopus 로고
    • GenomeVx: simple web-based creation of editable circular chromosome maps
    • Conant GC, Wolfe KH (2008) GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 24: 861-862.
    • (2008) Bioinformatics , vol.24 , pp. 861-862
    • Conant, G.C.1    Wolfe, K.H.2
  • 4
    • 0033008530 scopus 로고    scopus 로고
    • Pharmacological basis for the empirical use of Eugenia uniflora L (Myrtaceae) as antihypertensive
    • Consolini AE, Baldinio AN, Amat AG (1999) Pharmacological basis for the empirical use of Eugenia uniflora L (Myrtaceae) as antihypertensive. J Ethnopharmacol 66: 33-39.
    • (1999) J Ethnopharmacol , vol.66 , pp. 33-39
    • Consolini, A.E.1    Baldinio, A.N.2    Amat, A.G.3
  • 5
    • 17844391842 scopus 로고    scopus 로고
    • Anetholea anisata transferred to, and two new Australian taxa of Syzygium (Myrtaceae)
    • Craven LA, Biffin E (2005) Anetholea anisata transferred to, and two new Australian taxa of Syzygium (Myrtaceae). Blumea 50(1): 157-162.
    • (2005) Blumea , vol.50 , Issue.1 , pp. 157-162
    • Craven, L.A.1    Biffin, E.2
  • 7
    • 18144428771 scopus 로고    scopus 로고
    • Breakthrough in chloroplast genetic engineering of agronomically important crops
    • Daniell H, Kumar S, Dufourmantel N (2005) Breakthrough in chloroplast genetic engineering of agronomically important crops. Trends Biotechnol 23: 238-245.
    • (2005) Trends Biotechnol , vol.23 , pp. 238-245
    • Daniell, H.1    Kumar, S.2    Dufourmantel, N.3
  • 8
    • 29244465496 scopus 로고    scopus 로고
    • ASAP: amplification, sequencing and annotation of plastomes
    • Dhingra A, Folta KM (2005) ASAP: amplification, sequencing and annotation of plastomes. BMC Genom 6: 176.
    • (2005) BMC Genom , vol.6 , pp. 176
    • Dhingra, A.1    Folta, K.M.2
  • 11
    • 0033712738 scopus 로고    scopus 로고
    • Antihyperglycemic effect of Eugenia jambolana and Tinospora cordifolia in experimental diabetes and their effects on key metabolic enzymes involved in carbohydrate metabolism
    • Grover JK, Vats V, Rathi SS (2000) Antihyperglycemic effect of Eugenia jambolana and Tinospora cordifolia in experimental diabetes and their effects on key metabolic enzymes involved in carbohydrate metabolism. J Ethnopharmacol 73: 461-470.
    • (2000) J Ethnopharmacol , vol.73 , pp. 461-470
    • Grover, J.K.1    Vats, V.2    Rathi, S.S.3
  • 12
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31(13): 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 13
    • 33845495365 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the cotton (Gossypium barbadense L) chloroplast genome with a comparative analysis of sequences among 9 dicots plants
    • Ibrahim RI, Azuma J, Sakamoto M (2006) Complete nucleotide sequence of the cotton (Gossypium barbadense L) chloroplast genome with a comparative analysis of sequences among 9 dicots plants. Genes Genet Syst 81: 311-321.
    • (2006) Genes Genet Syst , vol.81 , pp. 311-321
    • Ibrahim, R.I.1    Azuma, J.2    Sakamoto, M.3
  • 14
    • 84877719043 scopus 로고    scopus 로고
    • Herbal medicine: Syzygium cumini (L.): a review
    • Jadhay VM, Kamble SS, Kadam VJ (2009) Herbal medicine: Syzygium cumini (L.): a review. J Pharm Res 2(8): 1212-1219.
    • (2009) J Pharm Res , vol.2 , Issue.8 , pp. 1212-1219
    • Jadhay, V.M.1    Kamble, S.S.2    Kadam, V.J.3
  • 15
    • 84877723232 scopus 로고    scopus 로고
    • Mode of pollination, fruit set and fruit drop in Jamun (Syzygium cumini Skeels)
    • Jai P, Singh SP (2007) Mode of pollination, fruit set and fruit drop in Jamun (Syzygium cumini Skeels). Environ Ecol (Special 4): 1151-1153.
    • (2007) Environ Ecol , Issue.Special 4 , pp. 1151-1153
    • Jai, P.1    Singh, S.P.2
  • 17
    • 79952990135 scopus 로고    scopus 로고
    • Variations in intergenic spacer rpl20-rps12 of mango (Mangifera indica) chloroplast DNA: implications in cultivar identification
    • Khan IA, Azim MK (2011) Variations in intergenic spacer rpl20-rps12 of mango (Mangifera indica) chloroplast DNA: implications in cultivar identification. Plant Syst Evol 292: 249-255.
    • (2011) Plant Syst Evol , vol.292 , pp. 249-255
    • Khan, I.A.1    Azim, M.K.2
  • 18
    • 84861013615 scopus 로고    scopus 로고
    • The chloroplast genome sequence of date palm (Phoenix dactylifera L. cv. 'Aseel')
    • Khan A, Khan IA, Heinze B, Azim MK (2012) The chloroplast genome sequence of date palm (Phoenix dactylifera L. cv. 'Aseel'). Plant Mol Biol Rep 30: 666-678.
    • (2012) Plant Mol Biol Rep , vol.30 , pp. 666-678
    • Khan, A.1    Khan, I.A.2    Heinze, B.3    Azim, M.K.4
  • 19
    • 0033066718 scopus 로고    scopus 로고
    • REPuter: fast computation of maximal repeats in complete genomes
    • Kurtz S, Schleiermacher C (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15(5): 426-427.
    • (1999) Bioinformatics , vol.15 , Issue.5 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 20
    • 0000116955 scopus 로고
    • Chloroplast DNA variation in Gliricidia sepium (Leguminosae): intraspecific phylogeny and tokogeny
    • Lavin M, Mathews S, Hughes C (1991) Chloroplast DNA variation in Gliricidia sepium (Leguminosae): intraspecific phylogeny and tokogeny. Am J Bot 78: 1576-1585.
    • (1991) Am J Bot , vol.78 , pp. 1576-1585
    • Lavin, M.1    Mathews, S.2    Hughes, C.3
  • 21
    • 1542347045 scopus 로고    scopus 로고
    • zPicture: dynamic alignment and visualization tool for analyzing conservation profiles
    • Ovcharenko I, Loots GG, Hardison RC, Miller W, Stubbs L (2004) zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. Genome Res 14: 472-477.
    • (2004) Genome Res , vol.14 , pp. 472-477
    • Ovcharenko, I.1    Loots, G.G.2    Hardison, R.C.3    Miller, W.4    Stubbs, L.5
  • 24
    • 0036929260 scopus 로고    scopus 로고
    • Evolutionary re-organisation of a large operon in Adzuki bean chloroplast DNA caused by inverted repeat movement
    • Perry AS, Brennan S, Murphy DJ, Wolfe KH (2002) Evolutionary re-organisation of a large operon in Adzuki bean chloroplast DNA caused by inverted repeat movement. DNA Res 9: 157-162.
    • (2002) DNA Res , vol.9 , pp. 157-162
    • Perry, A.S.1    Brennan, S.2    Murphy, D.J.3    Wolfe, K.H.4
  • 25
    • 0031526548 scopus 로고    scopus 로고
    • Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
    • Porebski SL, Bailey G, Baum BR (1997) Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep 15(1): 8-15.
    • (1997) Plant Mol Biol Rep , vol.15 , Issue.1 , pp. 8-15
    • Porebski, S.L.1    Bailey, G.2    Baum, B.R.3
  • 26
    • 84877712464 scopus 로고    scopus 로고
    • Horticulture Science Series, New India Publishing, New Delhi, India
    • Rajan S, Markose BL (2007) Propagation of horticultural crops: vol. 6, pp. 74-75, Horticulture Science Series, New India Publishing, New Delhi, India.
    • (2007) Propagation of Horticultural Crops , vol.6 , pp. 74-75
    • Rajan, S.1    Markose, B.L.2
  • 30
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6: 283-290.
    • (1999) DNA Res , vol.6 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 32
    • 33646550506 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum Eucalyptus globulus (Myrtaceae)
    • Steane DA (2005) Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum Eucalyptus globulus (Myrtaceae). DNA Res 12(3): 215-220.
    • (2005) DNA Res , vol.12 , Issue.3 , pp. 215-220
    • Steane, D.A.1
  • 33
    • 0029434954 scopus 로고
    • The chloroplast genome
    • Sugiura M (1995) The chloroplast genome. Essays Biochem 30: 49-57.
    • (1995) Essays Biochem , vol.30 , pp. 49-57
    • Sugiura, M.1
  • 34
    • 77951914538 scopus 로고    scopus 로고
    • The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships
    • Tangphatsornruang S, Sangsrakru D, Chanprasert J, Uthaipaisanwong P, Yoocha T, Jomchai N, Tragoonrung S (2010) The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships. DNA Res 17: 11-22.
    • (2010) DNA Res , vol.17 , pp. 11-22
    • Tangphatsornruang, S.1    Sangsrakru, D.2    Chanprasert, J.3    Uthaipaisanwong, P.4    Yoocha, T.5    Jomchai, N.6    Tragoonrung, S.7
  • 35
    • 0030987828 scopus 로고    scopus 로고
    • The effect of Syzygium cumini (L.) skeels on post-prandial blood glucose levels in non-diabetic rats and rats with streptozotocin-induced diabetes mellitus
    • Teixera CC, Pinto LP, Kessler FHP, Knijnik L, Pinto CP, Gastaldo GJ, Fuchs FD (1997) The effect of Syzygium cumini (L.) skeels on post-prandial blood glucose levels in non-diabetic rats and rats with streptozotocin-induced diabetes mellitus. J Ethnopharmacol 56: 209-213.
    • (1997) J Ethnopharmacol , vol.56 , pp. 209-213
    • Teixera, C.C.1    Pinto, L.P.2    Kessler, F.H.P.3    Knijnik, L.4    Pinto, C.P.5    Gastaldo, G.J.6    Fuchs, F.D.7
  • 36
    • 0542399647 scopus 로고    scopus 로고
    • A method for isolation of chloroplast DNA and mitochondrial DNA from sunflower
    • Triboush SO, Danilenko NG, Davydenko OG (1998) A method for isolation of chloroplast DNA and mitochondrial DNA from sunflower. Plant Mol Biol Rep 16: 183-189.
    • (1998) Plant Mol Biol Rep , vol.16 , pp. 183-189
    • Triboush, S.O.1    Danilenko, N.G.2    Davydenko, O.G.3
  • 37
    • 0033836096 scopus 로고    scopus 로고
    • A chloroplast DNA hypervariable region in eucalypts
    • Vaillancourt RE, Jackson HD (2000) A chloroplast DNA hypervariable region in eucalypts. Theor Appl Genet 101: 473-477.
    • (2000) Theor Appl Genet , vol.101 , pp. 473-477
    • Vaillancourt, R.E.1    Jackson, H.D.2
  • 38
    • 17644412943 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of Eugenia L. (Myrtaceae), with emphasis on southern African taxa
    • van der Merwe MM, van Wyk AE, Botha AM (2005) Molecular phylogenetic analysis of Eugenia L. (Myrtaceae), with emphasis on southern African taxa. Plant Syst Evol 251(1): 21-34.
    • (2005) Plant Syst Evol , vol.251 , Issue.1 , pp. 21-34
    • van der Merwe, M.M.1    van Wyk, A.E.2    Botha, A.M.3
  • 40
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20(17): 3252-3255.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.