Characterization of Trichodesmium-associated viral communities in the eastern Gulf of Mexico

FEMS Microbiology Ecology

Volumn 84, Issue 3, 2013, Pages 603-613

  Brown, Julia M ^a   Labarre, Brenna A ^a   Hewson, Ian ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

Cyanobacteria; Diazotroph; Temperate phage; Viral metagenomics

Indexed keywords

MITOMYCIN; SEA WATER;

COMPARATIVE STUDY; CYANOBACTERIUM; MARINE ECOSYSTEM; MICROBIAL COMMUNITY; NITROGEN; ORGANIC CARBON; SUBTROPICAL REGION; VIRUS;

ARTICLE; BACTERIOPHAGE; CYANOBACTERIUM; DRUG EFFECT; GENETICS; GULF OF MEXICO; ISOLATION AND PURIFICATION; LYSOGENIZATION; METAGENOME; MEXICO; MICROBIOLOGY; PHYSIOLOGY; VIROLOGY; VIRUS ACTIVATION;

BACTERIOPHAGES; CYANOBACTERIA; GULF OF MEXICO; LYSOGENY; METAGENOME; MEXICO; MITOMYCIN; SEAWATER; VIRUS ACTIVATION;

ATLANTIC OCEAN; GULF OF MEXICO;

CYANOBACTERIA; TRICHODESMIUM;

EID: 84877699206     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12088     Document Type: Article

References (35)

1. Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Anderson RE, Brazelton WJ & Baross JA (2011) Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol Ecol 77: 120-133.
3. Angly FE, Felts B, Breitbart M et al. (2006) The marine viromes of four oceanic regions. PLoS Biol 4: 2121-2131.
4. Berman-Frank I, Bidle KD, Haramaty L & Falkowski PG (2004) The demise of the marine cyanobacterium, Trichodesmium spp., via an autocatalyzed cell death pathway. Limnol Oceanogr 49: 997-1005.
5. Berman-Frank I, Rosenberg G, Levitan O, Haramaty L & Mari X (2007) Coupling between autocatalytic cell death and transparent exopolymeric particle production in the marine cyanobacterium Trichodesmium. Environ Microbiol 9: 1415-1422.
6. Bhasvar J, Polson SW, Dhankar S & Wommack EK (2009) VIROME: A Resource for Analysis of Viral Metagenomes. Abstracts of the General Meeting of the American Society for Microbiology 109.
7. Capone DG, Zehr JP, Paerl HW, Bergman B & Carpenter EJ (1997) Trichodesmium, a globally significant marine cyanobacterium. Science 276: 1221-1229.
8. Clokie MRJ, Millard AD & Mann NH (2010) T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virol J 7: 291-309.
9. Dehal PS, Joachimiak MP, Price MN et al. (2009) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res 38: D396-D400.
10. Dyhrman ST, Chappell PD, Haley ST, Moffett JW, Orchard ED, Waterbury JB & Webb EA (2006) Phosphonate utilization by the globally important marine diazotroph Trichodesmium. Nature 439: 68-71.
11. Gomez-Alvarez V, Teal TK & Schmidt TM (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J 3: 1314-1317.
12. Hawser SP, Oneil JM, Roman MR & Codd GA (1992) Toxicity of blooms of the cyanobacterium Trichodesmiumto zooplankton. J Appl Phycol 4: 79-86.
13. Hewson I, Govil SR, Capone DG, Carpenter EJ & Fuhrman JA (2004) Evidence of Trichodesmium viral lysis and potential significance for biogeochemical cycling in the oligotrophic ocean. Aquat Microb Ecol 36: 1-8.
14. Hewson I, Poretsky RS, Dyhrman ST, Zielinski B, White AE, Tripp HJ, Montoya JP & Zehr JP (2009) Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean. ISME J 3: 1286-1300.
15. Hmelo LR (2010) Microbial Interactions Associated with Biofilms Attached to Trichodesmium spp. and Detrital Particles in the Ocean. PhD Thesis, Massachusetts Institute of Technology - Woods Hole Oceanographic Institution, Joint Program in Oceanography/Applied Ocean Engineering, Woods Hole, MA.
16. Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R & Rodriguez-Valera F (2008) Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J 2: 1194-1212.
17. McDaniel LD, Houchin L, Williamson S & Paul JH (2001) Evaluation of seasonal changes in lysogeny in cyanobacteria in Tampa Bay. Abstracts of the General Meeting of the American Society for Microbiology 101: 489.
18. McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F & Paul JH (2008) Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. PLoS ONE 3: 9.
19. Nagasaki K (2008) Dinoflagellates, diatoms, and their viruses. J Microbiol 46: 235-243.
20. Ng FFT, Wheeler E, Greig D, Waltzek TB, Gulland F & Breitbart M (2011) Metagenomic identification of a novel anellovirus in Pacific harbor seal (Phoca vitulina richardsii) lung samples and its detection in samples from multiple years. J Gen Virol 92: 1318-1323.
21. Ohki K (1999) A possible role of temperate phage in the regulation of Trichodesmium biomass. Bull. Inst. Oceanogr. 0: 287-291.
22. O'Neil J & Roman M (1992) Grazers and associated organisms of Trichodesmium. Marine Pelagic Cyanobacteria: Trichodesmium and Other Diazotrophs (Carpenter EJ, Capone DG & Rueter JG, eds.) pp. 61-73. Bamberg: Kluwer Academic Publishers, Dordecht, The Netherlands.
23. Rho M, Tang H & Ye Y (2010) FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res 38: 20.
24. Rodier M & Le Borgne R (2010) Population and trophic dynamics of Trichodesmium thiebautii in the SE lagoon of New Caledonia. Comparison with T. erythraeum in the SW lagoon. Mar Pollut Bull 61: 349-359.
25. Sheridan CC, Steinberg DK & Kling GW (2002) The microbial and metazoan community associated with colonies of Trichodesmium spp.: a quantitative survey. J Plankton Res 24: 913-922.
26. Shoaib M, Baconnais S, Mechold U, Le Cam E, Lipinski M & Ogryzko V (2008) Multiple displacement amplification for complex mixtures of DNA fragments. BMC Genomics 9: 415.
27. Simpson AA, Nandhagopal N, Van Etten JL & Rossmann MG (2003) Structural analyses of Phycodnaviridae and Iridoviridae. Acta Crystallogr Sect D-Biol Crystallogr 59: 2053-2059.
28. Sullivan MB, Krastins B, Hughes JL, Kelly L, Chase M, Sarracino D & Chisholm SW (2009) The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial "mobilome."Environ Microbiol 11: 2935-2951.
29. Sun SL, Chen J, Li WZ, Altintas I et al. (2011) Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource. Nucleic Acids Res 39: D546-D551.
30. Thingstad TF (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45: 1320-1328.
31. Thurber RV, Haynes M, Breitbart M, Wegley L & Rohwer F (2009) Laboratory procedures to generate viral metagenomes. Nat Protoc 4: 470-483.
32. Van Mooy BAS, Hmelo LR, Sofen LE, Campagna SR, May AL, Dyhrman ST, Heithoff A, Webb EA, Momper L & Mincer TJ (2012) Quorum sensing control of phosphorus acquisition in Trichodesmium consortia. ISME J 6: 422-429.
33. Vardi A, Van Mooy BAS, Fredricks HF, Popendorf KJ, Ossolinski JE, Haramaty L & Bidle KD (2009) Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton. Science 326: 861-865.
34. Weinbauer MG & Suttle CA (1999) Lysogeny and prophage induction in coastal and offshore bacterial communities. Aquat Microb Ecol 18: 217-225.
35. Wilcox RM & Fuhrman JA (1994) Bacterial viruses in coastal seawater - lytic rather than lysogenic production. Marine Ecol-Prog Ser 114: 35-45.