-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F., Zardoya, R. & Posada, D. (2005). ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
58349109882
-
Classification of TTV and related viruses (anelloviruses)
-
Biagini, P. (2009). Classification of TTV and related viruses (anelloviruses). Curr Top Microbiol Immunol 331, 21-33.
-
(2009)
Curr Top Microbiol Immunol
, vol.331
, pp. 21-33
-
-
Biagini, P.1
-
5
-
-
35048819917
-
Circular genomes related to anelloviruses identified in human and animal samples by using a combined rolling-circle amplification/sequence-independent single primer amplification approach
-
Biagini, P., Uch, R., Belhouchet, M., Attoui, H., Cantaloube, J. F., Brisbarre, N. & de Micco, P. (2007). Circular genomes related to anelloviruses identified in human and animal samples by using a combined rolling-circle amplification/sequence-independent single primer amplification approach. J Gen Virol 88, 2696-2701.
-
(2007)
J Gen Virol
, vol.88
, pp. 2696-2701
-
-
Biagini, P.1
Uch, R.2
Belhouchet, M.3
Attoui, H.4
Cantaloube, J.F.5
Brisbarre, N.6
de Micco, P.7
-
6
-
-
33644873469
-
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
-
Breitbart, M. & Rohwer, F. (2005). Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques 39, 729-736.
-
(2005)
Biotechniques
, vol.39
, pp. 729-736
-
-
Breitbart, M.1
Rohwer, F.2
-
7
-
-
74849086825
-
Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009)
-
Carstens, E. B. (2010). Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009). Arch Virol 155, 133-146.
-
(2010)
Arch Virol
, vol.155
, pp. 133-146
-
-
Carstens, E.B.1
-
8
-
-
0034331073
-
Finding nuclear localization signals
-
Cokol, M., Nair, R. & Rost, B. (2000). Finding nuclear localization signals. EMBO Rep 1, 411-415.
-
(2000)
EMBO Rep
, vol.1
, pp. 411-415
-
-
Cokol, M.1
Nair, R.2
Rost, B.3
-
9
-
-
49849094858
-
Unraveling the puzzle of human anellovirus infections by comparison with avian infections with the chicken anemia virus
-
Davidson, I. & Shulman, L. M. (2008). Unraveling the puzzle of human anellovirus infections by comparison with avian infections with the chicken anemia virus. Virus Res 137, 1-15.
-
(2008)
Virus Res
, vol.137
, pp. 1-15
-
-
Davidson, I.1
Shulman, L.M.2
-
10
-
-
33947607974
-
Viral metagenomics
-
Delwart, E. L. (2007). Viral metagenomics. Rev Med Virol 17, 115-131.
-
(2007)
Rev Med Virol
, vol.17
, pp. 115-131
-
-
Delwart, E.L.1
-
11
-
-
58349092313
-
Intragenomic rearrangement in TT viruses: A possible role in the pathogenesis of disease
-
de Villiers, E.-M., Kimmel, R., Leppik, L. & Gunst, K. (2009). Intragenomic rearrangement in TT viruses: a possible role in the pathogenesis of disease. Curr Top Microbiol Immunol 331, 91-107.
-
(2009)
Curr Top Microbiol Immunol
, vol.331
, pp. 91-107
-
-
de Villiers, E.-M.1
Kimmel, R.2
Leppik, L.3
Gunst, K.4
-
13
-
-
77953128894
-
Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences
-
Eizirik, E., Murphy, W. J., Koepfli, K. P., Johnson, W. E., Dragoo, J. W., Wayne, R. K. & O'Brien, S. J. (2010). Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Mol Phylogenet Evol 56, 49-63.
-
(2010)
Mol Phylogenet Evol
, vol.56
, pp. 49-63
-
-
Eizirik, E.1
Murphy, W.J.2
Koepfli, K.P.3
Johnson, W.E.4
Dragoo, J.W.5
Wayne, R.K.6
O'Brien, S.J.7
-
14
-
-
57849154032
-
Effect of coinfection with genogroup 1 porcine torque teno virus on porcine circovirus type 2-associated postweaning multisystemic wasting syndrome in gnotobiotic pigs
-
Ellis, J. A., Allan, G. & Krakowka, S. (2008). Effect of coinfection with genogroup 1 porcine torque teno virus on porcine circovirus type 2-associated postweaning multisystemic wasting syndrome in gnotobiotic pigs. Am J Vet Res 69, 1608-1614.
-
(2008)
Am J Vet Res
, vol.69
, pp. 1608-1614
-
-
Ellis, J.A.1
Allan, G.2
Krakowka, S.3
-
15
-
-
40949113443
-
-
Eighth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press
-
Fauquet, C. M., Mayo, M. A., Maniloff, J., Desselberger, U. & Ball, L. A. (editors) (2005). Virus Taxonomy: Classification and Nomenclature of Viruses. Eighth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press.
-
(2005)
Virus Taxonomy: Classification and Nomenclature of Viruses
-
-
Fauquet, C.M.1
Mayo, M.A.2
Maniloff, J.3
Desselberger, U.4
Ball, L.A.5
-
16
-
-
79956316069
-
Pathologic, Microbiologic and Epidemiologic Characterization of Pseudomonas Sp
-
th Annual Conference of the International Association for Aquatic Animal Medicine, 10-14 May 2008, Pomezia, Italy, Edited by T. Reidarson. Rome: IAAAM
-
th Annual Conference of the International Association for Aquatic Animal Medicine, 10-14 May 2008, Pomezia, Italy, p. 100. Edited by T. Reidarson. Rome: IAAAM.
-
(2008)
In California Sea Lions (Zalophus Californianus) and Pacific Harbor Seals (Phoca Vitulina)
, pp. 100
-
-
Gaffney, P.1
Colegrove, K.2
Gulland, F.3
Byrne, B.4
Jang, S.5
Edgar, K.6
-
17
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
18
-
-
0033587568
-
Complete circular DNA genome of a TT virus variant (isolate name SANBAN) and 44 partial ORF2 sequences implicating a great degree of diversity beyond genotypes
-
Hijikata, M., Takahashi, K. & Mishiro, S. (1999). Complete circular DNA genome of a TT virus variant (isolate name SANBAN) and 44 partial ORF2 sequences implicating a great degree of diversity beyond genotypes. Virology 260, 17-22.
-
(1999)
Virology
, vol.260
, pp. 17-22
-
-
Hijikata, M.1
Takahashi, K.2
Mishiro, S.3
-
19
-
-
33846288314
-
Torque teno virus (TTV): Current status
-
Hino, S. & Miyata, H. (2007). Torque teno virus (TTV): current status. Rev Med Virol 17, 45-57.
-
(2007)
Rev Med Virol
, vol.17
, pp. 45-57
-
-
Hino, S.1
Miyata, H.2
-
20
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
21
-
-
20744441655
-
New DNA viruses identified in patients with acute viral infection syndrome
-
Jones, M. S., Kapoor, A., Lukashov, V. V., Simmonds, P., Hecht, F. & Delwart, E. (2005). New DNA viruses identified in patients with acute viral infection syndrome. J Virol 79, 8230-8236.
-
(2005)
J Virol
, vol.79
, pp. 8230-8236
-
-
Jones, M.S.1
Kapoor, A.2
Lukashov, V.V.3
Simmonds, P.4
Hecht, F.5
Delwart, E.6
-
22
-
-
0033774974
-
Three spliced mRNAs of TT virus transcribed from a plasmid containing the entire genome in COS1 cells
-
Kamahora, T., Hino, S. & Miyata, H. (2000). Three spliced mRNAs of TT virus transcribed from a plasmid containing the entire genome in COS1 cells. J Virol 74, 9980-9986.
-
(2000)
J Virol
, vol.74
, pp. 9980-9986
-
-
Kamahora, T.1
Hino, S.2
Miyata, H.3
-
23
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33, 511-518.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
24
-
-
57849151233
-
Evaluation of the effects of porcine genogroup 1 torque teno virus in gnotobiotic swine
-
Krakowka, S. & Ellis, J. A. (2008). Evaluation of the effects of porcine genogroup 1 torque teno virus in gnotobiotic swine. Am J Vet Res 69, 1623-1629.
-
(2008)
Am J Vet Res
, vol.69
, pp. 1623-1629
-
-
Krakowka, S.1
Ellis, J.A.2
-
25
-
-
9744266702
-
Wildlife as source of zoonotic infections
-
Kruse, H., Kirkemo, A.-M. & Handeland, K. (2004). Wildlife as source of zoonotic infections. Emerg Infect Dis 10, 2067-2072.
-
(2004)
Emerg Infect Dis
, vol.10
, pp. 2067-2072
-
-
Kruse, H.1
Kirkemo, A.-M.2
Handeland, K.3
-
26
-
-
24644509664
-
Pathogen surveillance in animals
-
Public health
-
Kuiken, T., Leighton, F. A., Fouchier, R. A. M., LeDuc, J. W., Peiris, J. S. M., Schudel, A., Stöhr, K. & Osterhaus, A. D. M. E. (2005). Public health. Pathogen surveillance in animals. Science 309, 1680-1681.
-
(2005)
Science
, vol.309
, pp. 1680-1681
-
-
Kuiken, T.1
Leighton, F.A.2
Fouchier, R.A.M.3
Leduc, J.W.4
Peiris, J.S.M.5
Schudel, A.6
Stöhr, K.7
Osterhaus, A.D.M.E.8
-
27
-
-
0032812341
-
Improved detection systems for TT virus reveal high prevalence in humans, non-human primates and farm animals
-
Leary, T.P., Erker, J. C., Chalmers, M. L., Desai, S.M. & Mushahwar, I.K. (1999). Improved detection systems for TT virus reveal high prevalence in humans, non-human primates and farm animals. J Gen Virol 80, 2115-2120.
-
(1999)
J Gen Virol
, vol.80
, pp. 2115-2120
-
-
Leary, T.P.1
Erker, J.C.2
Chalmers, M.L.3
Desai, S.M.4
Mushahwar, I.K.5
-
28
-
-
0037320053
-
TT virus in the nasal secretions of children with acute respiratory diseases: Relations to viremia and disease severity
-
Maggi, F., Pifferi, M., Fornai, C., Andreoli, E., Tempestini, E., Vatteroni, M., Presciuttini, S., Marchi, S., Pietrobelli, A. & other authors (2003). TT virus in the nasal secretions of children with acute respiratory diseases: relations to viremia and disease severity. J Virol 77, 2418-2425.
-
(2003)
J Virol
, vol.77
, pp. 2418-2425
-
-
Maggi, F.1
Pifferi, M.2
Fornai, C.3
Andreoli, E.4
Tempestini, E.5
Vatteroni, M.6
Presciuttini, S.7
Marchi, S.8
Pietrobelli, A.9
-
29
-
-
4344562974
-
Correlation between Torque tenovirus infection and serum levels of eosinophil cationic protein in children hospitalized for acute respiratory diseases
-
Maggi, F., Pifferi, M., Tempestini, E., Lanini, L., De Marco, E., Fornai, C., Andreoli, E., Presciuttini, S., Vatteroni, M. L. & other authors (2004). Correlation between Torque tenovirus infection and serum levels of eosinophil cationic protein in children hospitalized for acute respiratory diseases. J Infect Dis 190, 971-974.
-
(2004)
J Infect Dis
, vol.190
, pp. 971-974
-
-
Maggi, F.1
Pifferi, M.2
Tempestini, E.3
Lanini, L.4
de Marco, E.5
Fornai, C.6
Andreoli, E.7
Presciuttini, S.8
Vatteroni, M.L.9
-
30
-
-
67449103680
-
Novel anellovirus discovered from a mortality event of captive California sea lions
-
Ng, T. F. F., Suedmeyer, W. K., Wheeler, E., Gulland, F. & Breitbart, M. (2009a). Novel anellovirus discovered from a mortality event of captive California sea lions. J Gen Virol 90, 1256-1261.
-
(2009)
J Gen Virol
, vol.90
, pp. 1256-1261
-
-
Ng, T.F.F.1
Suedmeyer, W.K.2
Wheeler, E.3
Gulland, F.4
Breitbart, M.5
-
31
-
-
62749189896
-
Discovery of a novel single-stranded DNA virus from a sea turtle fibropapilloma by using viral metagenomics
-
Ng, T. F. F., Manire, C., Borrowman, K., Langer, T., Ehrhart, L. & Breitbart, M. (2009b). Discovery of a novel single-stranded DNA virus from a sea turtle fibropapilloma by using viral metagenomics. J Virol 83, 2500-2509.
-
(2009)
J Virol
, vol.83
, pp. 2500-2509
-
-
Ng, T.F.F.1
Manire, C.2
Borrowman, K.3
Langer, T.4
Ehrhart, L.5
Breitbart, M.6
-
32
-
-
36148992220
-
Analysis of the entire genomes of fifteen torque teno midi virus variants classifiable into a third group of genus Anellovirus
-
Ninomiya, M., Takahashi, M., Shimosegawa, T. & Okamoto, H. (2007). Analysis of the entire genomes of fifteen torque teno midi virus variants classifiable into a third group of genus Anellovirus. Arch Virol 152, 1961-1975.
-
(2007)
Arch Virol
, vol.152
, pp. 1961-1975
-
-
Ninomiya, M.1
Takahashi, M.2
Shimosegawa, T.3
Okamoto, H.4
-
33
-
-
62749128558
-
Analysis of the entire genomes of torque teno midi virus variants in chimpanzees: Infrequent cross-species infection between humans and chimpanzees
-
Ninomiya, M., Takahashi, M., Hoshino, Y., Ichiyama, K., Simmonds, P. & Okamoto, H. (2009). Analysis of the entire genomes of torque teno midi virus variants in chimpanzees: infrequent cross-species infection between humans and chimpanzees. J Gen Virol 90, 347-358.
-
(2009)
J Gen Virol
, vol.90
, pp. 347-358
-
-
Ninomiya, M.1
Takahashi, M.2
Hoshino, Y.3
Ichiyama, K.4
Simmonds, P.5
Okamoto, H.6
-
34
-
-
77954110896
-
Detection of a respiratory coronavirus from tissues archived during a pneumonia epizootic in free-ranging Pacific harbor seals Phoca vitulina richardsii
-
Nollens, H. H., Wellehan, J. F., Archer, L., Lowenstine, L. J. & Gulland, F. M. D. (2010). Detection of a respiratory coronavirus from tissues archived during a pneumonia epizootic in free-ranging Pacific harbor seals Phoca vitulina richardsii. Dis Aquat Organ 90, 113-120.
-
(2010)
Dis Aquat Organ
, vol.90
, pp. 113-120
-
-
Nollens, H.H.1
Wellehan, J.F.2
Archer, L.3
Lowenstine, L.J.4
Gulland, F.M.D.5
-
35
-
-
0034715856
-
Species-specific TT viruses in humans and nonhuman primates and their phylogenetic relatedness
-
Okamoto, H., Nishizawa, T., Tawara, A., Peng, Y., Takahashi, M., Kishimoto, J., Tanaka, T., Miyakawa, Y. & Mayumi, M. (2000). Species-specific TT viruses in humans and nonhuman primates and their phylogenetic relatedness. Virology 277, 368-378.
-
(2000)
Virology
, vol.277
, pp. 368-378
-
-
Okamoto, H.1
Nishizawa, T.2
Tawara, A.3
Peng, Y.4
Takahashi, M.5
Kishimoto, J.6
Tanaka, T.7
Miyakawa, Y.8
Mayumi, M.9
-
36
-
-
0034840083
-
Genomic and evolutionary characterization of TT virus (TTV) in tupaias and comparison with species-specific TTVs in humans and non-human primates
-
Okamoto, H., Nishizawa, T., Takahashi, M., Tawara, A., Peng, Y. H., Kishimoto, J. & Wang, Y. (2001). Genomic and evolutionary characterization of TT virus (TTV) in tupaias and comparison with species-specific TTVs in humans and non-human primates. J Gen Virol 82, 2041-2050.
-
(2001)
J Gen Virol
, vol.82
, pp. 2041-2050
-
-
Okamoto, H.1
Nishizawa, T.2
Takahashi, M.3
Tawara, A.4
Peng, Y.H.5
Kishimoto, J.6
Wang, Y.7
-
37
-
-
0036267921
-
Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and their relatedness with species-specific TTVs in primates and tupaias
-
Okamoto, H., Takahashi, M., Nishizawa, T., Tawara, A., Fukai, K., Muramatsu, U., Naito, Y. & Yoshikawa, A. (2002). Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and their relatedness with species-specific TTVs in primates and tupaias. J Gen Virol 83, 1291-1297.
-
(2002)
J Gen Virol
, vol.83
, pp. 1291-1297
-
-
Okamoto, H.1
Takahashi, M.2
Nishizawa, T.3
Tawara, A.4
Fukai, K.5
Muramatsu, U.6
Naito, Y.7
Yoshikawa, A.8
-
38
-
-
79952136203
-
-
Institute of Evolutionary Biology, University of Edinburgh
-
Rambaut, A. (2010). FigTree, version 1.3.1. Institute of Evolutionary Biology, University of Edinburgh.
-
(2010)
FigTree, Version 1.3.1
-
-
Rambaut, A.1
-
39
-
-
61649093088
-
Eukaryotic viruses in wastewater samples from the United States
-
Symonds, E. M., Griffin, D. W. & Breitbart, M. (2009). Eukaryotic viruses in wastewater samples from the United States. Appl Environ Microbiol 75, 1402-1409.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 1402-1409
-
-
Symonds, E.M.1
Griffin, D.W.2
Breitbart, M.3
-
40
-
-
70349902546
-
Prevalence of swine Torque teno virus genogroups 1 and 2 in Japanese swine with suspected post-weaning multisystemic wasting syndrome and porcine respiratory disease complex
-
Taira, O., Ogawa, H., Nagao, A., Tuchiya, K., Nunoya, T. & Ueda, S. (2009). Prevalence of swine Torque teno virus genogroups 1 and 2 in Japanese swine with suspected post-weaning multisystemic wasting syndrome and porcine respiratory disease complex. Vet Microbiol 139, 347-350.
-
(2009)
Vet Microbiol
, vol.139
, pp. 347-350
-
-
Taira, O.1
Ogawa, H.2
Nagao, A.3
Tuchiya, K.4
Nunoya, T.5
Ueda, S.6
-
41
-
-
0033827916
-
Full or near full length nucleotide sequences of TT virus variants (Types SANBAN and YONBAN) and the TT virus-like mini virus
-
Takahashi, K., Hijikata, M., Samokhvalov, E. I. & Mishiro, S. (2000). Full or near full length nucleotide sequences of TT virus variants (Types SANBAN and YONBAN) and the TT virus-like mini virus. Intervirology 43, 119-123.
-
(2000)
Intervirology
, vol.43
, pp. 119-123
-
-
Takahashi, K.1
Hijikata, M.2
Samokhvalov, E.I.3
Mishiro, S.4
-
42
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
Wang, D., Coscoy, L., Zylberberg, M., Avila, P. C., Boushey, H. A., Ganem, D. & DeRisi, J. L. (2002). Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A 99, 15687-15692.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
Derisi, J.L.7
-
43
-
-
70350545933
-
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
-
Willner, D., Furlan, M., Haynes, M., Schmieder, R., Angly, F. E., Silva, J., Tammadoni, S., Nosrat, B., Conrad, D. & Rohwer, F. (2009). Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE 4, e7370.
-
(2009)
PLoS ONE
, vol.4
-
-
Willner, D.1
Furlan, M.2
Haynes, M.3
Schmieder, R.4
Angly, F.E.5
Silva, J.6
Tammadoni, S.7
Nosrat, B.8
Conrad, D.9
Rohwer, F.10
|