Bioinformatics-based selection of a model cell type for invitro biomaterial testing

Biomaterials

Volumn 34, Issue 22, 2013, Pages 5552-5561

  Groen, Nathalie ^a   Van de Peppel, Jeroen ^b   Yuan, Huipin ^a   Van Leeuwen, Johannes P T M ^b   Van Blitterswijk, Clemens A ^a   De Boer, Jan ^a  

^a UNIVERSITY OF TWENTE   (Netherlands)

^b ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

Bioactivity; Biomaterials; Bone regeneration; Cell type comparison; Invitro testing; Whole genome expression profiling

Indexed keywords

BONE REGENERATION; CELL TYPES; EXPRESSION PROFILING; GENE EXPRESSION DIFFERENCES; GENE EXPRESSION PROFILES; HIGH-THROUGHPUT SCREENING; IN-VITRO TESTING; MATERIAL DEVELOPMENT;

ASSAYS; BIOACTIVITY; BIOINFORMATICS; CELL CULTURE; CELLS; GENE EXPRESSION; TESTING;

BIOMATERIALS;

BIOMATERIAL;

ANIMAL CELL; ARTICLE; BIOINFORMATICS; BONE DEVELOPMENT; BONE REGENERATION; CELL CULTURE; CELL LINE; CELL SELECTION; CELL TYPE; CONTROLLED STUDY; GENE EXPRESSION; GENETIC TRANSCRIPTION; HOMEOSTASIS; IN VITRO STUDY; MATERIALS TESTING; NONHUMAN; PRIORITY JOURNAL;

BIOCOMPATIBLE MATERIALS; CALCIUM PHOSPHATES; CELL LINE; CELL SURVIVAL; COMPUTATIONAL BIOLOGY; DURAPATITE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HUMANS; MATERIALS TESTING; MICROSCOPY, ELECTRON, SCANNING; MODELS, BIOLOGICAL; OSSEOINTEGRATION; OSTEOGENESIS;

EID: 84877633972     PISSN: 01429612     EISSN: 18785905     Source Type: Journal    
DOI: 10.1016/j.biomaterials.2013.04.001     Document Type: Article

References (50)

1. Place E.S., Evans N.D., Stevens M.M. Complexity in biomaterials for tissue engineering. Nat Mater 2009, 8(6):457-470.
2. Habibovic P., Woodfield T., Groot K., van Blitterswijk C. Predictive value ofinvitro and invivo; assays in bone and cartilage repair - what do they really tell us about the clinical performance?. Adv Exp Med Biol 2006, 585:327-360.
3. Kobel S., Lutolf M. High-throughput methods to define complex stem cell niches. Biotechniques 2010, 48(4).
4. Chatterjee K., Sun L., Chow L.C., Young M.F., Simon C.G. Combinatorial screening of osteoblast response to 3D calcium phosphate/poly(-caprolactone) scaffolds using gradients and arrays. Biomaterials 2011, 32(5):1361-1369.
5. Mei Y., Saha K., Bogatyrev S.R., Yang J., Hook A.L., Kalcioglu Z.I., et al. Combinatorial development of biomaterials for clonal growth of human pluripotent stem cells. Nat Mater 2010, 9(9):768-778.
6. Engler A.J., Sen S., Sweeney H.L., Discher D.E. Matrix elasticity directs stem cell lineage specification. Cell 2006, 126(4):677-689.
7. Unadkat H.V., Hulsman M., Cornelissen K., Papenburg B.J., Truckenmüller R.K., Post G.F., et al. An algorithm-based topographical biomaterials library to instruct cell fate. Proc Natl Acad Sci U S A 2011, 108(40):16565-16570.
8. Gilbert P.M., Havenstrite K.L., Magnusson K.E.G., Sacco A., Leonardi N.A., Kraft P., et al. Substrate elasticity regulates skeletal muscle stem cell self-renewal in culture. Science 2010, 329(5995):1078-1081.
9. Meredith J.C., Sormana J.-L., Keselowsky B.G., García A.J., Tona A., Karim A., et al. Combinatorial characterization of cell interactions with polymer surfaces. JBiomed Mater Res A 2003, 66A(3):483-490.
10. Chatterjee K., Lin-Gibson S., Wallace W.E., Parekh S.H., Lee Y.J., Cicerone M.T., et al. The effect of 3D hydrogel scaffold modulus on osteoblast differentiation andmineralization revealed by combinatorial screening. Biomaterials 2010, 31(19):5051-5062.
11. Svensen N., Díaz-Mochón Juan J., Bradley M. Decoding a PNA encoded peptide library by PCR: the discovery of new cell surface receptor ligands. Chem Biol 2011, 18(10):1284-1289.
12. Alves H., Dechering K., Van Blitterswijk C., De Boer J. High-throughput assay for the identification of compounds regulating osteogenic differentiation of human mesenchymal stromal cells. PLoS One 2011, 6(10):e26678.
13. Brey D.M., Motlekar N.A., Diamond S.L., Mauck R.L., Garino J.P., Burdick J.A. High-throughput screening of a small molecule library for promoters and inhibitors of mesenchymal stem cell osteogenic differentiation. Biotechnol Bioeng 2011, 108(1):163-174.
14. Corum L.E., Hlady V. Screening platelet-surface interactions using negative surface charge gradients. Biomaterials 2010, 31(12):3148-3155.
15. Chan B.P., Hui T.Y., Chan O.C., So K.F., Lu W., Cheung K.M., et al. Photochemical cross-linking for collagen-based scaffolds: a study on optical properties, mechanical properties, stability, and hematocompatibility. Tissue Eng 2007, 13(1):73-85.
16. Yuan H., Fernandes H., Habibovic P., de Boer J., Barradas A.M.C., de Ruiter A., et al. Osteoinductive ceramics as a synthetic alternative to autologous bone grafting. Proc Natl Acad Sci U S A 2010, 107(31):13614-13619.
17. Yuan H., van den Doel M., Li S., van Blitterswijk C.A., de Groot K., de Bruijn J.D. Acomparison of the osteoinductive potential of two calcium phosphate ceramics implanted intramuscularly in goats. JMater Sci Mater Med 2002, 13(12):1271-1275.
18. Yuan H., Yang Z., de Bruijn J.D., de Groot K., Zhang X. Material-dependent bone induction by calcium phosphate ceramics: a 2.5-year study in dog. Biomaterials 2001, 22(19):2617-2623.
19. Shikinami Y., Okazaki K., Saito M., Okuno M., Hasegawa S., Tamura J., et al. Bioactive and bioresorbable cellular cubic-composite scaffolds for use in bone reconstruction. JRoy Soc Interface 2006, 3(11):805-821.
20. Barbieri D., Renard A.J., de Bruijn J.D., Yuan H. Heterotopic bone formation by nano-apatite containing poly(d, l-lactide) composites. Eur Cell Mater 2010, 19:252-261.
21. Alves H., van Ginkel J., Groen N., Hulsman M., Mentink A., Reinders M., et al. Amesenchymal stromal cell gene signature for donor age. PLoS One 2012, 7(8):e42908.
22. Menicanin D., Bartold P.M., Zannettino A.C., Gronthos S. Identification of a common gene expression signature associated with immature clonal mesenchymal cell populations derived from bone marrow and dental tissues. Stem Cells Dev 2010, 19(10):1501-1510.
23. Kaltz N., Ringe J., Holzwarth C., Charbord P., Niemeyer M., Jacobs V.R., et al. Novel markers of mesenchymal stem cells defined by genome-wide gene expression analysis of stromal cells from different sources. Exp Cell Res 2010, 316(16):2609-2617.
24. Vohra S., Hennessy K., Sawyer A., Zhuo Y., Bellis S. Comparison of mesenchymal stem cell and osteosarcoma cell adhesion to hydroxyapatite. JMater Sci Mater Med 2008, 19(12):3567-3574.
25. Phinney D.G., Kopen G., Righter W., Webster S., Tremain N., Prockop D.J. Donor variation in the growth properties and osteogenic potential of human marrow stromal cells. JCell Biochem 1999, 75(3):424-436.
26. Bari C.D., Dell'Accio F., Karystinou A., Guillot P.V., Fisk N.M., Jones E.A., et al. Abiomarker-based mathematical model to predict bone-forming potency of human synovial and periosteal mesenchymal stem cells. Arthritis Rheum 2008, 58(1):240-250.
27. Doorn J., van de Peppel J., van Leeuwen J.P.T.M., Groen N., van Blitterswijk C.A., de Boer J. Pro-osteogenic trophic effects by PKA activation in human mesenchymal stromal cells. Biomaterials 2011, 32(26):6089-6098.
28. Siddappa R., Martens A., Doorn J., Leusink A., Olivo C., Licht R., et al. cAMP/PKA pathway activation in human mesenchymal stem cells invitro results in robust bone formation invivo. Proc Natl Acad Sci U S A 2008, 105(20):7281-7286.
29. da Silva Meirelles L., Caplan A.I., Nardi N.B. In search of the invivo identity of mesenchymal stem cells. Stem Cells 2008, 26(9):2287-2299.
30. Feng J., Mantesso A., De Bari C., Nishiyama A., Sharpe P.T. Dual origin of mesenchymal stem cells contributing to organ growth and repair. Proc Natl Acad Sci U S A 2011, 108(16):6503-6508.
31. Siddappa R., Licht R., van Blitterswijk C., de Boer J. Donor variation and loss of multipotency during invitro expansion of human mesenchymal stem cells for bone tissue engineering. JOrthop Res 2007, 25(8):1029-1041.
32. de Boer J., Siddappa R., Gaspar C., Apeldoorn Av, Fodde R., Blitterswijk Cv Wnt signaling inhibits osteogenic differentiation of human mesenchymal stem cells. Bone 2004, 34(5):818-826.
33. de Boer J., Wang H.J., van Blitterswijk C. Effects of Wnt signaling on proliferation and differentiation of human mesenchymal stem cells. Tissue Eng 2004, 10(3-4):393-401.
34. Fernandes H., Dechering K., Someren E.V., Steeghs I., Apotheker M., Leusink A., et al. The role of collagen crosslinking in differentiation of human mesenchymal stem cells and MC3T3-E1 cells. Tissue Eng Part A 2009, 15(12):3857-3867.
35. Shimizu F., Sano Y., M-a Abe, Maeda T., Ohtsuki S., Terasaki T., et al. Peripheral nerve pericytes modify the blood-nerve barrier function and tight junctional molecules through the secretion of various soluble factors. JCell Physiol 2011, 226(1):255-266.
36. Chiba H., Sawada N., Ono T., Ishii S., Mori M. Establishment and characterization of a simian virus 40-immortalized osteoblastic cell line from normal human bone. Jpn J Cancer Res 1993, 84(3):290-297.
37. van Driel M., Koedam M., Buurman C.J., Hewison M., Chiba H., Uitterlinden A.G., et al. Evidence for auto/paracrine actions of vitamin D in bone: 1α-hydroxylase expression and activity in human bone cells. FASEB J 2006, 20(13):2417-2419.
38. Takagishi Y., Kawakami T., Hara Y., Shinkai M., Takezawa T., Nagamune T. Bone-like tissue formation by three-dimensional culture of MG63 osteosarcoma cells in gelatin hydrogels using calcium-enriched medium. Tissue Eng 2006, 12(4):927-937.
39. Li S., de Wijn J.R., Li J., Layrolle P., de Groot K. Macroporous biphasic calcium phosphate scaffold with high permeability/porosity Ratio. Tissue Eng 2003, 9(3):535-548.
40. Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5(10):R80.
41. Smyth G.K. Limma: linear models for microarray data. Bioinformatics and computational biology solutions using R and bioconductor 2005, 397-420. Spinger, New York. R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber (Eds.).
42. Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. JRoy Stat Soc B 1995, 57:289-300.
43. Barradas A.M.C., Yuan H., van der Stok J., Le Quang B., Fernandes H., Chaterjea A., et al. The influence of genetic factors on the osteoinductive potential of calcium phosphate ceramics in mice. Biomaterials 2012, 33(23):5696-5705.
44. Goeman J.J., van de Geer S.A., de Kort F., van Houwelingen H.C. Aglobal test for groups of genes: testing association with a clinical outcome. Bioinformatics 2004, 20(1):93-99.
45. Yuan H., Fernandes H., Habibovic P., de Boer J., Barradas A.M.C., Walsh W.R., et al. 'Smart' biomaterials and osteoinductivity. Nat Rev Rheumatol 2011, 7(4):c1. author reply c2.
46. Brown S.A. Tissue culture test methods 1983, 810. ASTM, Special Technical Publication.
47. Olivares-Navarrete R., Gittens R.A., Schneider J.M., Hyzy S.L., Haithcock D.A., Ullrich P.F., et al. Osteoblasts exhibit a more differentiated phenotype and increased bone morphogenetic protein production on titanium alloy substrates than on poly-ether-ether-ketone. Spine J 2012, 12(3):265-272.
48. Olivares-Navarrete R., Raines A.L., Hyzy S.L., Park J.H., Hutton D.L., Cochran D.L., et al. Osteoblast maturation and new bone formation in response to titanium implant surface features are reduced with age. JBone Miner Res 2012, 27(8):1773-1783.
49. Zinger O., Zhao G., Schwartz Z., Simpson J., Wieland M., Landolt D., et al. Differential regulation of osteoblasts by substrate microstructural features. Biomaterials 2005, 26(14):1837-1847.
50. Tenstad E., Tourovskaia A., Folch A., Myklebost O., Rian E. Extensive adipogenic and osteogenic differentiation of patterned human mesenchymal stem cells in a microfluidic device. Lab Chip 2010, 10(11):1401-1409.