Detection of Novel Polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in Feces, Urine, Blood, Respiratory Swabs and Cerebrospinal Fluid

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Rockett, Rebecca J ^a   Sloots, Theo P ^a   Bowes, Sharleen ^a   O'Neill, Nicholas ^a   Ye, Suifang ^a   Robson, Jenny ^b   Whiley, David M ^a   Lambert, Stephen B ^a,c   Wang, David ^d   Nissen, Michael D ^a,e   Bialasiewicz, Seweryn ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b Sullivan Nicolaides Pathology ^*  (Australia)

^c QUEENSLAND HEALTH   (Australia)

^d WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e Central Queensland Pathology Laboratory   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGED; ARTICLE; BLOOD ANALYSIS; CEREBROSPINAL FLUID ANALYSIS; CHILD; CONTROLLED STUDY; DNA SEQUENCE; FECES ANALYSIS; FEMALE; GASTROINTESTINAL DISEASE; HUMAN; HUMAN POLYOMAVIRUS 6; HUMAN POLYOMAVIRUS 7; HUMAN POLYOMAVIRUS 9; IMMUNOCOMPROMISED PATIENT; INFANT; MALE; MERKEL CELL POLYOMAVIRUS; NONHUMAN; NOSE SMEAR; NUCLEOTIDE SEQUENCE; POLYOMA VIRUS; PRESCHOOL CHILD; PREVALENCE; REAL TIME POLYMERASE CHAIN REACTION; SCHOOL CHILD; THROAT CULTURE; TRICHODYSPLASIA SPINULOSA ASSOCIATED POLYOMAVIRUS; URINALYSIS; VIRUS DETECTION;

ADULT; BLOOD; CEREBROSPINAL FLUID; CHILD; FECES; GENOME, VIRAL; HUMANS; POLYOMAVIRUS; POLYOMAVIRUS INFECTIONS; PREVALENCE; QUEENSLAND; REAL-TIME POLYMERASE CHAIN REACTION; RESPIRATORY SYSTEM; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; URINE;

EID: 84877301818     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0062764     Document Type: Article

References (48)

1. Gaynor AM, Nissen MD, Whiley DM, Mackay IM, Lambert SB, et al. (2007) Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS pathogens 3: e64 doi:10.1371/journal.ppat.0030064.
2. Allander T, Andreasson K, Gupta S, Bjerkner A, Bogdanovic G, et al. (2007) Identification of a third human polyomavirus. Journal of virology 81: 4130-4136 doi:10.1128/JVI.00028-07.
3. Feng H, Shuda M, Chang Y, Moore PS, (2008) Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science (New York, NY) 319: 1096-1100 doi:10.1126/science.1152586.
4. Schowalter RM, Pastrana DV, Pumphrey K, Moyer AL, Buck CB, (2010) Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell host & microbe 7: 509-515 doi:10.1016/j.chom.2010.05.006.
5. Van der Meijden E, Janssens RW, Lauber C, Bouwes Bavinck JN, Gorbalenya AE, et al. (2010) Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromized patient. PLoS pathogens 6: e1001024 doi:10.1371/journal.ppat.1001024.
6. Scuda N, Hofmann J, Calvignac-Spencer S, Ruprecht K, Liman P, et al. (2011) A novel human polyomavirus closely related to the african green monkey-derived lymphotropic polyomavirus. Journal of virology 85: 4586-4590 doi:10.1128/JVI.02602-10.
7. Siebrasse EA, Reyes A, Lim ES, Zhao G, Mkakosya RS, et al. (2012) Identification of MW polyomavirus, a novel polyomavirus in human stool. Journal of virology.
8. Buck CB, Phan GQ, Raiji MT, Murphy PM, McDermott DH, et al. (2012) Complete genome sequence of a tenth human polyomavirus. Journal of virology 86: 10887 doi:10.1128/JVI.01690-12.
9. Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, et al. (2012) Discovery of a novel polyomavirus in acute diarrheal samples from children. PloS one 7: e49449 doi:10.1371/journal.pone.0049449.
10. Padgett BL, Walker DL, ZuRhein GM, Eckroade RJ, Dessel BH, (1971) Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1: 1257-1260.
11. Gardner SD, Field AM, Coleman DV, Hulme B, (1971) New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet 1: 1253-1257.
12. Goudsmit J, Wertheim-van Dillen P, Van Strien A, Van der Noordaa J, (1982) The role of BK virus in acute respiratory tract disease and the presence of BKV DNA in tonsils. Journal of medical virology 10: 91-99.
13. Doerries K, (2006) Human polyomavirus JC and BK persistent infection. Advances in experimental medicine and biology 577: 102-116 doi:10.1007/0-387-32957-9_8.
14. Chesters PM, Heritage J, McCance DJ, (1983) Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. The Journal of infectious diseases 147: 676-684.
15. Heritage J, Chesters PM, McCance DJ, (1981) The persistence of papovavirus BK DNA sequences in normal human renal tissue. Journal of medical virology 8: 143-150.
16. Shishido-Hara Y, (2010) Progressive multifocal leukoencephalopathy and promyelocytic leukemia nuclear bodies: a review of clinical, neuropathological, and virological aspects of JC virus-induced demyelinating disease. Acta neuropathologica 120: 403-417 doi:10.1007/s00401-010-0694-x.
17. Hirsch HH, (2002) Polyomavirus BK nephropathy: a (re-)emerging complication in renal transplantation. American journal of transplantation?: official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2: 25-30.
18. Bogdanovic G, Priftakis P, Giraud G, Kuzniar M, Ferraldeschi R, et al. (2004) Association between a high BK virus load in urine samples of patients with graft-versus-host disease and development of hemorrhagic cystitis after hematopoietic stem cell transplantation. Journal of clinical microbiology 42: 5394-5396 doi:10.1128/JCM.42.11.5394-5396.2004.
19. Bialasiewicz S, Whiley DM, Lambert SB, Nissen MD, Sloots TP, (2009) Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 45: 249-254 doi:10.1016/j.jcv.2009.05.002.
20. Neske F, Blessing K, Pröttel A, Ullrich F, Kreth HW, et al. (2009) Detection of WU polyomavirus DNA by real-time PCR in nasopharyngeal aspirates, serum, and stool samples. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 44: 115-118 doi:10.1016/j.jcv.2008.12.004.
21. Csoma E, (2011) Prevalence of WU and KI Polyomaviruses in Plasma, Urine, and Respiratory Samples From Renal Transplant Patients. Seven 1278: 1275-1278 doi:10.1002/jmv.
22. Babakir-Mina M, Ciccozzi M, Bonifacio D, Bergallo M, Costa C, et al. (2009) Identification of the novel KI and WU polyomaviruses in human tonsils. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 46: 75-79 doi:10.1016/j.jcv.2009.06.009.
23. Bialasiewicz S, (2009) Merkel Cell Polyomavirus DNA in Respiratory Specimens from Children and Adults. Emerging Infectious Diseases 15: 492-494 doi:10.3201/eid1503.081067.
24. Tolstov YL, Knauer A, Chen JG, Kensler TW, Kingsley L, et al. (2011) Asymptomatic primary Merkel cell polyomavirus infection among adults. Emerging infectious diseases 17: 1371-1380 doi:10.3201/eid1708.110079.
25. Abedi Kiasari B, Vallely PJ, Klapper PE, (2011) Merkel cell polyomavirus DNA in immunocompetent and immunocompromised patients with respiratory disease. Journal of Medical Virology 83: 2220-2224 doi:10.1002/jmv.
26. Champeau W, Segondy M, Foulongne V, (2011) Detection of Merkel Cell Polyomavirus on Environmental Surfaces. 1439: 1435-1439 doi:10.1002/jmv.
27. Foulongne V, Dereure O, Kluger N, Molès JP, Guillot B, et al. (2010) Merkel cell polyomavirus DNA detection in lesional and nonlesional skin from patients with Merkel cell carcinoma or other skin diseases. The British journal of dermatology 162: 59-63 doi:10.1111/j.1365-2133.2009.09381.x.
28. Siebrasse EA, Bauer I, Holtz LR, Le B-M, Lassa-Claxton S, et al. (2012) Human polyomaviruses in children undergoing transplantation, United States, 2008-2010. Emerging infectious diseases 18: 1676-1679 doi:10.3201/eid1810.120359.
29. Syrmis MW, Whiley DM, Thomas M, Mackay IM, Williamson J, et al. (2004) A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples. The Journal of molecular diagnostics?: JMD 6: 125-131 doi:10.1016/S1525-1578(10)60500-4.
30. Maertzdorf J, Wang CK, Brown JB, Quinto JD, Chu M, et al. (2004) Real-time reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. Journal of clinical microbiology 42: 981-986.
31. Lu X, Holloway B, Dare RK, Kuypers J, Yagi S, et al. (2008) Real-time reverse transcription-PCR assay for comprehensive detection of human rhinoviruses. Journal of clinical microbiology 46: 533-539 doi:10.1128/JCM.01739-07.
32. Wang CYT, Arden KE, Greer R, Sloots TP, Mackay IM, (2012) A novel duplex real-time PCR for HPIV-4 detects co-circulation of both viral subtypes among ill children during 2008. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 54: 83-85 doi:10.1016/j.jcv.2012.01.013.
33. Arden KE, Mcerlean P, Nissen MD, Sloots TP, Mackay IM, (2006) Frequent Detection of Human Rhinoviruses, and Bocavirus During Acute Respiratory Tract Infections. 1240: 1232-1240 doi:10.1002/jmv.
34. Bialasiewicz S, Whiley DM, Buhrer-Skinner M, Bautista C, Barker K, et al. (2009) A novel gel-based method for self-collection and ambient temperature postal transport of urine for PCR detection of Chlamydia trachomatis. Sexually transmitted infections 85: 102-105 doi:10.1136/sti.2008.032607.
35. Mackay IM, Arden KE, Nissen MD, Sloots TP (2007) Challenges Facing Real-time PCR Characterization of Acute Respiratory Tract Infections. Real-Time PCR in Microbiology. 2679-317.
36. Antonsson A, Bialasiewicz S, Rockett RJ, Jacob K, Bennett IC, et al. (2012) Exploring the prevalence of ten polyomaviruses and two herpes viruses in breast cancer. PloS one 7: e39842 doi:10.1371/journal.pone.0039842.
37. Hall T, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
38. Kumar S, Nei M, Dudley J, Tamura K, (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in bioinformatics 9: 299-306 doi:10.1093/bib/bbn017.
39. e72_national_statement_nhmrc_arc.pdf (application/pdf Object) (n.d.). Available: http://www.nhmrc.gov.au/_files_nhmrc/publications/attachments/e72_national_statement_nhmrc_arc.pdf. Accessed 4 February 2013.
40. Babakir-Mina M, Ciccozzi M, Perno CF, Ciotti M, (2011) The novel KI, WU, MC polyomaviruses: possible human pathogens? The new microbiologica 34: 1-8.
41. Bofill-Mas S, Formiga-Cruz M, Clemente-Casares P, Calafell F, Girones R, (2001) Potential transmission of human polyomaviruses through the gastrointestinal tract after exposure to virions or viral DNA. Journal of virology 75: 10290-10299 doi:10.1128/JVI.75.21.10290-10299.2001.
42. Zhong S, Randhawa PS, Ikegaya H, Chen Q, Zheng H-Y, et al. (2009) Distribution patterns of BK polyomavirus (BKV) subtypes and subgroups in American, European and Asian populations suggest co-migration of BKV and the human race. The Journal of general virology 90: 144-152 doi:10.1099/vir.0.83611-0.
43. Stoner GL, Jobes DV, Fernandez Cobo M, Agostini HT, Chima SC, et al. (2000) JC virus as a marker of human migration to the Americas. Microbes and infection/Institut Pasteur 2: 1905-1911.
44. Bialasiewicz S, Whiley DM, Lambert SB, Wang D, Nissen MD, et al. (2007) A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 40: 15-18 doi:10.1016/j.jcv.2007.07.001.
45. Rao S, Garcea RL, Robinson CC, Simões EF, (2011) WU and KI polyomavirus infections in pediatric hematology/oncology patients with acute respiratory tract illness. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 52: 28-32 doi:10.1016/j.jcv.2011.05.024.
46. Babakir-mina M, Ciccozzi M, Alteri C, Polchi P, Picardi A, et al. (2009) Excretion of the Novel Polyomaviruses KI and WU in the Stool of Patients With Hematological Disorders. 1673: 1668-1673 doi:10.1002/jmv.
47. Barzon L, Squarzon L, Militello V, Trevisan M, Palù G, (2009) Human KI and WU polyomavirus infection in immunocompromised subjects. Journal of clinical virology?: the official publication of the Pan American Society for Clinical Virology 45: 370 doi:10.1016/j.jcv.2009.05.026.
48. Mourez T, (2009) Polyomaviruses KI and WU in Immunocompromised Patients with Respiratory Disease. Emerging Infectious Diseases 15: 107-109 doi:10.3201/1501.080758.