-
1
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
DOI 10.1016/j.cell.2006.02.017, PII S0092867406001929
-
Ley R. E., Peterson D. A., Gordon J. I., Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 2006 124 4 837 848 2-s2.0-32944466887 10.1016/j.cell.2006.02.017 (Pubitemid 43261456)
-
(2006)
Cell
, vol.124
, Issue.4
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
2
-
-
59249091675
-
Recent advances and remaining gaps in our knowledge of associations between gut microbiota and human health
-
2-s2.0-59249091675 10.3748/wjg.15.81
-
Mai V., Draganov P. V., Recent advances and remaining gaps in our knowledge of associations between gut microbiota and human health. World Journal of Gastroenterology 2009 15 1 81 85 2-s2.0-59249091675 10.3748/wjg.15.81
-
(2009)
World Journal of Gastroenterology
, vol.15
, Issue.1
, pp. 81-85
-
-
Mai, V.1
Draganov, P.V.2
-
3
-
-
57649184474
-
Genome-scale analyses of health-promoting bacteria: Probiogenomics
-
2-s2.0-57649184474 10.1038/nrmicro2047
-
Ventura M., O'Flaherty S., Claesson M. J., Turroni F., Klaenhammer T. R., van Sinderen D., O'Toole P. W., Genome-scale analyses of health-promoting bacteria: probiogenomics. Nature Reviews Microbiology 2009 7 1 61 71 2-s2.0-57649184474 10.1038/nrmicro2047
-
(2009)
Nature Reviews Microbiology
, vol.7
, Issue.1
, pp. 61-71
-
-
Ventura, M.1
O'Flaherty, S.2
Claesson, M.J.3
Turroni, F.4
Klaenhammer, T.R.5
Van Sinderen, D.6
O'Toole, P.W.7
-
4
-
-
35348968286
-
The Human Microbiome Project
-
DOI 10.1038/nature06244, PII NATURE06244
-
Turnbaugh P. J., Ley R. E., Hamady M., Fraser-Liggett C. M., Knight R., Gordon J. I., The human microbiome project. Nature 2007 449 7164 804 810 2-s2.0-35348968286 10.1038/nature06244 (Pubitemid 47598620)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
5
-
-
58149142746
-
Negative interactions with the microbiota: IBD
-
New York, NY, USA Springer
-
Salzman N. H., Bevins C. L., Huffnagle G. B., Noverr M. C., Negative interactions with the microbiota: IBD. GI Microbiota and Regulation of the Immune System 2008 635 New York, NY, USA Springer 67 78
-
(2008)
GI Microbiota and Regulation of the Immune System
, vol.635
, pp. 67-78
-
-
Salzman, N.H.1
Bevins, C.L.2
Huffnagle, G.B.3
Noverr, M.C.4
-
6
-
-
70449703996
-
What are the consequences of the disappearing human microbiota?
-
2-s2.0-70449703996 10.1038/nrmicro2245
-
Blaser M. J., Falkow S., What are the consequences of the disappearing human microbiota? Nature Reviews Microbiology 2009 7 12 887 894 2-s2.0-70449703996 10.1038/nrmicro2245
-
(2009)
Nature Reviews Microbiology
, vol.7
, Issue.12
, pp. 887-894
-
-
Blaser, M.J.1
Falkow, S.2
-
7
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
2-s2.0-67349250428 10.1038/nri2515
-
Round J. L., Mazmanian S. K., The gut microbiota shapes intestinal immune responses during health and disease. Nature Reviews Immunology 2009 9 5 313 323 2-s2.0-67349250428 10.1038/nri2515
-
(2009)
Nature Reviews Immunology
, vol.9
, Issue.5
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
8
-
-
33144468326
-
European evidence based consensus on the diagnosis and management of Crohn's disease: Definitions and diagnosis
-
DOI 10.1136/gut.2005.081950a
-
Stange E. F., Travis S. P. L., Vermeire S., Beglinger C., Kupcinskas L., Geboes K., Barakauskiene A., Villanacci V., Von Herbay A., Warren B. F., Gasche C., Tilg H., Schreiber S. W., Schölmerich J., Reinisch W., European evidence based consensus on the diagnosis and management of Crohn's disease: definitions and diagnosis. Gut 2006 55 1 i1 i15 2-s2.0-33144468326 10.1136/gut.2005.081950a (Pubitemid 43268290)
-
(2006)
Gut
, vol.55
, Issue.SUPPL. 1
-
-
Stange, E.F.1
Travis, S.P.L.2
Vermeire, S.3
Beglinger, C.4
Kupcinskas, L.5
Geboes, K.6
Barakauskiene, A.7
Villanacci, V.8
Von Herbay, A.9
Warren, B.F.10
Gasche, C.11
Tilg, H.12
Schreiber, S.W.13
Scholmerich, J.14
Reinisch, W.15
-
9
-
-
46049086230
-
Analysis of bacterial bowel communities of IBD patients: What has it revealed?
-
DOI 10.1002/ibd.20392
-
Sokol H., Lay C., Seksik P., Tannock G. W., Analysis of bacterial bowel communities of IBD patients: what has it revealed? Inflammatory Bowel Diseases 2008 14 6 858 867 2-s2.0-46049086230 10.1002/ibd.20392 (Pubitemid 351898071)
-
(2008)
Inflammatory Bowel Diseases
, vol.14
, Issue.6
, pp. 858-867
-
-
Sokol, H.1
Lay, C.2
Seksik, P.3
Tannock, G.W.4
-
10
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
2-s2.0-55949124035 10.1073/pnas.0804812105
-
Sokol H., Pigneur B., Watterlot L., Lakhdari O., Bermúdez- Humarán L. G., Gratadoux J. J., Blugeon S., Bridonneau C., Furet J. P., Corthier G., Grangette C., Vasquez N., Pochart P., Trugnan G., Thomas G., Blottière H. M., Doré J., Marteau P., Seksik P., Langella P., Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proceedings of the National Academy of Sciences of the United States of America 2008 105 43 16731 16736 2-s2.0-55949124035 10.1073/pnas.0804812105
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.43
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
Lakhdari, O.4
Bermúdez- Humarán, L.G.5
Gratadoux, J.J.6
Blugeon, S.7
Bridonneau, C.8
Furet, J.P.9
Corthier, G.10
Grangette, C.11
Vasquez, N.12
Pochart, P.13
Trugnan, G.14
Thomas, G.15
Blottière, H.M.16
Doré, J.17
Marteau, P.18
Seksik, P.19
Langella, P.20
more..
-
11
-
-
38749106156
-
European evidence-based Consensus on the diagnosis and management of ulcerative colitis: Definitions and diagnosis
-
DOI 10.1016/j.crohns.2007.11.001, PII S187399460700075X
-
Stange E. F., Travis S. P. L., Vermeire S., Reinisch W., Geboes K., Barakauskiene A., Feakins R., Fléjou J. F., Herfarth H., Hommes D. W., Kupcinskas L., Lakatos P. L., Mantzaris G. J., Schreiber S., Villanacci V., Warren B. F., European evidence-based consensus on the diagnosis and management of ulcerative colitis: definitions and diagnosis. Journal of Crohn's and Colitis 2008 2 1 1 23 2-s2.0-38749106156 10.1016/j.crohns.2007.11.001 (Pubitemid 351179487)
-
(2008)
Journal of Crohn's and Colitis
, vol.2
, Issue.1
, pp. 1-23
-
-
Stange, E.F.1
Travis, S.P.L.2
Vermeire, S.3
Reinisch, W.4
Geboes, K.5
Barakauskiene, A.6
Feakins, R.7
Flejou, J.F.8
Herfarth, H.9
Hommes, D.W.10
Kupcinskas, L.11
Lakatos, P.L.12
Mantzaris, G.J.13
Schreiber, S.14
Villanacci, V.15
Warren, B.F.16
-
12
-
-
78650155416
-
Highlighting new phylogenetic specificities of Crohn's disease microbiota
-
2-s2.0-78650155416 10.1002/ibd.21436
-
Mondot S., Kang S., Furet J. P., de Carcer D. A., McSweeney C., Morrison M., Marteau P., Doré J., Leclerc M., Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflammatory Bowel Diseases 2011 17 1 185 192 2-s2.0-78650155416 10.1002/ibd.21436
-
(2011)
Inflammatory Bowel Diseases
, vol.17
, Issue.1
, pp. 185-192
-
-
Mondot, S.1
Kang, S.2
Furet, J.P.3
De Carcer, D.A.4
McSweeney, C.5
Morrison, M.6
Marteau, P.7
Doré, J.8
Leclerc, M.9
-
13
-
-
67049161224
-
A characterization in childhood inflammatory bowel disease, a new population-based inception cohort from south-eastern Norway, 2005-07, showing increased incidence in crohn's disease
-
2-s2.0-67049161224 10.1080/00365520802647434
-
Perminow G., Brackmann S., Lyckander L. G., Franke A., Borthne A., Rydning A., Aamodt G., Schreiber S., Vatn M. H., A characterization in childhood inflammatory bowel disease, a new population-based inception cohort from south-eastern Norway, 2005-07, showing increased incidence in crohn's disease. Scandinavian Journal of Gastroenterology 2009 44 4 446 456 2-s2.0-67049161224 10.1080/00365520802647434
-
(2009)
Scandinavian Journal of Gastroenterology
, vol.44
, Issue.4
, pp. 446-456
-
-
Perminow, G.1
Brackmann, S.2
Lyckander, L.G.3
Franke, A.4
Borthne, A.5
Rydning, A.6
Aamodt, G.7
Schreiber, S.8
Vatn, M.H.9
-
14
-
-
79954527727
-
Increase of regulatory T cells in ileal mucosa of untreated pediatric Crohn's disease patients
-
2-s2.0-79954527727 10.3109/00365521.2011.551887
-
Reikvam D. H., Perminow G., Lyckander L. G., Gran J. M., Brandtzaeg P., Vatn M., Carlsen H. S., Increase of regulatory T cells in ileal mucosa of untreated pediatric Crohn's disease patients. Scandinavian Journal of Gastroenterology 2011 46 5 550 560 2-s2.0-79954527727 10.3109/00365521.2011. 551887
-
(2011)
Scandinavian Journal of Gastroenterology
, vol.46
, Issue.5
, pp. 550-560
-
-
Reikvam, D.H.1
Perminow, G.2
Lyckander, L.G.3
Gran, J.M.4
Brandtzaeg, P.5
Vatn, M.6
Carlsen, H.S.7
-
15
-
-
84863105536
-
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease
-
e39242 10.1371/journal.pone.0039242
-
Papa E., Docktor M., Smillie C., Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PLoS ONE 2012 7 6 e39242 10.1371/journal.pone.0039242
-
(2012)
PLoS ONE
, vol.7
, Issue.6
-
-
Papa, E.1
Docktor, M.2
Smillie, C.3
-
16
-
-
84055190987
-
Gut microbiota and pediatric disease
-
10.1159/000332969
-
Iebba V., Aloi M., Civitelli F., Cucchiara S., Gut microbiota and pediatric disease. Digestive Diseases 2011 29 6 531 539 10.1159/000332969
-
(2011)
Digestive Diseases
, vol.29
, Issue.6
, pp. 531-539
-
-
Iebba, V.1
Aloi, M.2
Civitelli, F.3
Cucchiara, S.4
-
17
-
-
53649101060
-
Multivariate curve resolution of mixed bacterial DNA sequence spectra: Identification and quantification of bacteria in undefined mixture samples
-
2-s2.0-53649101060 10.1002/cem.1115
-
Zimonja M., Rudi K., Trosvik P., Næs T., Multivariate curve resolution of mixed bacterial DNA sequence spectra: identification and quantification of bacteria in undefined mixture samples. Journal of Chemometrics 2008 22 5 309 322 2-s2.0-53649101060 10.1002/cem.1115
-
(2008)
Journal of Chemometrics
, vol.22
, Issue.5
, pp. 309-322
-
-
Zimonja, M.1
Rudi, K.2
Trosvik, P.3
Næs, T.4
-
18
-
-
84861134838
-
Abrupt temporal fluctuations in chicken fecal microbiota explained by gastrointestinal origin
-
10.1128/AEM.05391-11
-
Sekelja M., Rud I., Knutsen S. H., Denstadli V., Westereng B., Naes T., Rudi K., Abrupt temporal fluctuations in chicken fecal microbiota explained by gastrointestinal origin. Applied and Environmental Microbiology 2012 78 8 2941 2948 10.1128/AEM.05391-11
-
(2012)
Applied and Environmental Microbiology
, vol.78
, Issue.8
, pp. 2941-2948
-
-
Sekelja, M.1
Rud, I.2
Knutsen, S.H.3
Denstadli, V.4
Westereng, B.5
Naes, T.6
Rudi, K.7
-
20
-
-
84655176310
-
The impact of perinatal immune development on mucosal homeostasis and chronic inflammation
-
10.1038/nri3112
-
Renz H., Brandtzaeg P., Hornef M., The impact of perinatal immune development on mucosal homeostasis and chronic inflammation. Nature Reviews Immunology 2012 12 1 9 23 10.1038/nri3112
-
(2012)
Nature Reviews Immunology
, vol.12
, Issue.1
, pp. 9-23
-
-
Renz, H.1
Brandtzaeg, P.2
Hornef, M.3
-
21
-
-
77954941440
-
Regulatory T cells: A helping hand from Bacteroides fragilis
-
2-s2.0-77954941440 10.1038/nri2827
-
David R., Regulatory T cells: a helping hand from Bacteroides fragilis. Nature Reviews Immunology 2010 10 8 539 2-s2.0-77954941440 10.1038/nri2827
-
(2010)
Nature Reviews Immunology
, vol.10
, Issue.8
, pp. 539
-
-
David, R.1
-
22
-
-
77951061062
-
Prevention of allergy in infants of allergic mothers by probiotic Escherichia coli
-
2-s2.0-77951061062 10.1159/000312638
-
Lodinova-Zadnikova R., Prokešová L., Kocourková I., Hrdý J., Žižka J., Prevention of allergy in infants of allergic mothers by probiotic Escherichia coli. International Archives of Allergy and Immunology 2010 153 2 201 206 2-s2.0-77951061062 10.1159/000312638
-
(2010)
International Archives of Allergy and Immunology
, vol.153
, Issue.2
, pp. 201-206
-
-
Lodinova-Zadnikova, R.1
Prokešová, L.2
Kocourková, I.3
Hrdý, J.4
Žižka, J.5
-
23
-
-
80054033663
-
Temporal variations in early gut microbial colonization are associated with allergen-specific immunoglobulin e but not atopic eczema at 2 years of age
-
10.1111/j.1365-2222.2011.03817.x
-
Storro O., Oien T., Langsrud O., Rudi K., Dotterud C., Johnsen R., Temporal variations in early gut microbial colonization are associated with allergen-specific immunoglobulin E but not atopic eczema at 2 years of age. Clinical and Experimental Allergy 2011 41 11 1545 1554 10.1111/j.1365-2222.2011. 03817.x
-
(2011)
Clinical and Experimental Allergy
, vol.41
, Issue.11
, pp. 1545-1554
-
-
Storro, O.1
Oien, T.2
Langsrud, O.3
Rudi, K.4
Dotterud, C.5
Johnsen, R.6
-
24
-
-
84859584769
-
Modelling bacterial transmission in human allergen-specific IgE sensitization
-
10.1111/j.1472-765X.2012.03229.x
-
Rudi K., Storro O., Oien T., Johnsen R., Modelling bacterial transmission in human allergen-specific IgE sensitization. Letters in Applied Microbiology 2012 54 5 447 454 10.1111/j.1472-765X.2012.03229.x
-
(2012)
Letters in Applied Microbiology
, vol.54
, Issue.5
, pp. 447-454
-
-
Rudi, K.1
Storro, O.2
Oien, T.3
Johnsen, R.4
-
25
-
-
34548483459
-
Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum
-
DOI 10.1038/ismej.2007.52, PII ISMEJ200752
-
Baumgart M., Dogan B., Rishniw M., Weitzman G., Bosworth B., Yantiss R., Orsi R. H., Wiedmann M., McDonough P., Kim S. G., Berg D., Schukken Y., Scherl E., Simpson K. W., Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. ISME Journal 2007 1 5 403 418 2-s2.0-34548483459 10.1038/ismej.2007.52 (Pubitemid 47373247)
-
(2007)
ISME Journal
, vol.1
, Issue.5
, pp. 403-418
-
-
Baumgart, M.1
Dogan, B.2
Rishniw, M.3
Weitzman, G.4
Bosworth, B.5
Yantiss, R.6
Orsi, R.H.7
Wiedmann, M.8
McDonough, P.9
Kim, S.G.10
Berg, D.11
Schukken, Y.12
Scherl, E.13
Simpson, K.W.14
-
26
-
-
34547192712
-
Nontypeable Haemophilus influenzae: Understanding virulence and commensal behavior
-
DOI 10.1016/j.tim.2007.06.004, PII S0966842X07001096
-
Erwin A. L., Smith A. L., Nontypeable Haemophilus influenzae: understanding virulence and commensal behavior. Trends in Microbiology 2007 15 8 355 362 2-s2.0-34547192712 10.1016/j.tim.2007.06.004 (Pubitemid 47126851)
-
(2007)
Trends in Microbiology
, vol.15
, Issue.8
, pp. 355-362
-
-
Erwin, A.L.1
Smith, A.L.2
-
27
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
10.1038/nature11053
-
Yatsunenko T., Rey F. E., Manary M. J., Trehan I., Dominguez-Bello M. G., Contreras M., Magris M., Hidalgo G., Baldassano R. N., Anokhin A. P., Heath A. C., Warner B., Reeder J., Kuczynski J., Caporaso J. G., Lozupone C. A., Lauber C., Clemente J. C., Knights D., Knight R., Gordon J. I., Human gut microbiome viewed across age and geography. Nature 2012 486 7402 222 227 10.1038/nature11053
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
28
-
-
79961113106
-
Temporal development of the infant gut microbiota in immunoglobulin E-sensitized and nonsensitized children determined by the GA-map infant array
-
2-s2.0-79961113106 10.1128/CVI.00062-11
-
Vebø H. C., Sekelja M., Nestestog R., Storrø O., Johnsen R., Øien T., Rudi K., Temporal development of the infant gut microbiota in immunoglobulin E-sensitized and nonsensitized children determined by the GA-map infant array. Clinical and Vaccine Immunology 2011 18 8 1326 1335 2-s2.0-79961113106 10.1128/CVI.00062-11
-
(2011)
Clinical and Vaccine Immunology
, vol.18
, Issue.8
, pp. 1326-1335
-
-
Vebø, H.C.1
Sekelja, M.2
Nestestog, R.3
Storrø, O.4
Johnsen, R.5
Øien, T.6
Rudi, K.7
|