메뉴 건너뛰기




Volumn 12, Issue 5, 2013, Pages 2078-2089

The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: The detection of the human papillomavirus at the protein level

Author keywords

cervical cancer; cervical smear; CID; HCD; HPV; iTRAQ; Orbitrap Elite; phosphorylation; power analysis; proteomics; sample size; ThinPrep

Indexed keywords

ARTICLE; COLLISIONALLY ACTIVATED DISSOCIATION; DNA HYBRIDIZATION; HUMAN PAPILLOMAVIRUS TYPE 16; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PHOSPHORYLATION; PROTEOMICS; UTERINE CERVIX CYTOLOGY; VIRUS DETECTION; WART VIRUS;

EID: 84877157474     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr301067r     Document Type: Article
Times cited : (33)

References (51)
  • 1
    • 79959424627 scopus 로고    scopus 로고
    • Quantitative, high-resolution proteomics for data-driven systems biology
    • Cox, J.; Mann, M. Quantitative, high-resolution proteomics for data-driven systems biology Annu. Rev. Biochem. 2011, 80, 273-99
    • (2011) Annu. Rev. Biochem. , vol.80 , pp. 273-299
    • Cox, J.1    Mann, M.2
  • 2
    • 60849093488 scopus 로고    scopus 로고
    • Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis
    • Bouchal, P.; Roumeliotis, T.; Hrstka, R.; Nenutil, R.; Vojtesek, B.; Garbis, S. D. Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis J. Proteome Res. 2009, 8 (1) 362-73
    • (2009) J. Proteome Res. , vol.8 , Issue.1 , pp. 362-373
    • Bouchal, P.1    Roumeliotis, T.2    Hrstka, R.3    Nenutil, R.4    Vojtesek, B.5    Garbis, S.D.6
  • 3
    • 53049090352 scopus 로고    scopus 로고
    • Search for potential markers for prostate cancer diagnosis, prognosis and treatment in clinical tissue specimens using amine-specific isobaric tagging (iTRAQ) with two-dimensional liquid chromatography and tandem mass spectrometry
    • Garbis, S. D.; Tyritzis, S. I.; Roumeliotis, T.; Zerefos, P.; Giannopoulou, E. G.; Vlahou, A.; Kossida, S.; Diaz, J.; Vourekas, S.; Tamvakopoulos, C.; Pavlakis, K.; Sanoudou, D.; Constantinides, C. A. Search for potential markers for prostate cancer diagnosis, prognosis and treatment in clinical tissue specimens using amine-specific isobaric tagging (iTRAQ) with two-dimensional liquid chromatography and tandem mass spectrometry J. Proteome Res. 2008, 7 (8) 3146-58
    • (2008) J. Proteome Res. , vol.7 , Issue.8 , pp. 3146-3158
    • Garbis, S.D.1    Tyritzis, S.I.2    Roumeliotis, T.3    Zerefos, P.4    Giannopoulou, E.G.5    Vlahou, A.6    Kossida, S.7    Diaz, J.8    Vourekas, S.9    Tamvakopoulos, C.10    Pavlakis, K.11    Sanoudou, D.12    Constantinides, C.A.13
  • 4
    • 79952140710 scopus 로고    scopus 로고
    • A novel multidimensional protein identification technology approach combining protein size exclusion prefractionation, peptide zwitterion-ion hydrophilic interaction chromatography, and nano-ultraperformance RP chromatography/nESI-MS2 for the in-depth analysis of the serum proteome and phosphoproteome: Application to clinical sera derived from humans with benign prostate hyperplasia
    • Garbis, S. D.; Roumeliotis, T. I.; Tyritzis, S. I.; Zorpas, K. M.; Pavlakis, K.; Constantinides, C. A. A novel multidimensional protein identification technology approach combining protein size exclusion prefractionation, peptide zwitterion-ion hydrophilic interaction chromatography, and nano-ultraperformance RP chromatography/nESI-MS2 for the in-depth analysis of the serum proteome and phosphoproteome: application to clinical sera derived from humans with benign prostate hyperplasia Anal. Chem. 2011, 83 (3) 708-18
    • (2011) Anal. Chem. , vol.83 , Issue.3 , pp. 708-718
    • Garbis, S.D.1    Roumeliotis, T.I.2    Tyritzis, S.I.3    Zorpas, K.M.4    Pavlakis, K.5    Constantinides, C.A.6
  • 6
    • 77951746656 scopus 로고    scopus 로고
    • Nipple aspirate fluid proteome of healthy females and patients with breast cancer
    • Pavlou, M. P.; Kulasingam, V.; Sauter, E. R.; Kliethermes, B.; Diamandis, E. P. Nipple aspirate fluid proteome of healthy females and patients with breast cancer Clin. Chem. 2010, 56 (5) 848-55
    • (2010) Clin. Chem. , vol.56 , Issue.5 , pp. 848-855
    • Pavlou, M.P.1    Kulasingam, V.2    Sauter, E.R.3    Kliethermes, B.4    Diamandis, E.P.5
  • 8
    • 33947357719 scopus 로고    scopus 로고
    • Discovery of candidate tumor markers for prostate cancer via proteomic analysis of cell culture-conditioned medium
    • Sardana, G.; Marshall, J.; Diamandis, E. P. Discovery of candidate tumor markers for prostate cancer via proteomic analysis of cell culture-conditioned medium Clin. Chem. 2007, 53 (3) 429-37
    • (2007) Clin. Chem. , vol.53 , Issue.3 , pp. 429-437
    • Sardana, G.1    Marshall, J.2    Diamandis, E.P.3
  • 11
    • 84861125134 scopus 로고    scopus 로고
    • A quantitative proteomic analysis of lung epithelial (A549) cells infected with 2009 pandemic influenza A virus using stable isotope labelling with amino acids in cell culture
    • Dove, B. K.; Surtees, R.; Bean, T. J.; Munday, D.; Wise, H. M.; Digard, P.; Carroll, M. W.; Ajuh, P.; Barr, J. N.; Hiscox, J. A. A quantitative proteomic analysis of lung epithelial (A549) cells infected with 2009 pandemic influenza A virus using stable isotope labelling with amino acids in cell culture Proteomics 2012, 12 (9) 1431-6
    • (2012) Proteomics , vol.12 , Issue.9 , pp. 1431-1436
    • Dove, B.K.1    Surtees, R.2    Bean, T.J.3    Munday, D.4    Wise, H.M.5    Digard, P.6    Carroll, M.W.7    Ajuh, P.8    Barr, J.N.9    Hiscox, J.A.10
  • 12
    • 79952241470 scopus 로고    scopus 로고
    • Proteome profiling of Epstein-Barr virus infected nasopharyngeal carcinoma cell line: Identification of potential biomarkers by comparative iTRAQ-coupled 2D LC/MS-MS analysis
    • Feng, X.; Zhang, J.; Chen, W. N.; Ching, C. B. Proteome profiling of Epstein-Barr virus infected nasopharyngeal carcinoma cell line: identification of potential biomarkers by comparative iTRAQ-coupled 2D LC/MS-MS analysis J. Proteomics 2011, 74 (4) 567-76
    • (2011) J. Proteomics , vol.74 , Issue.4 , pp. 567-576
    • Feng, X.1    Zhang, J.2    Chen, W.N.3    Ching, C.B.4
  • 14
    • 78649489748 scopus 로고    scopus 로고
    • Why do viruses cause cancer? Highlights of the first century of human tumour virology
    • Moore, P. S.; Chang, Y. Why do viruses cause cancer? Highlights of the first century of human tumour virology Nat. Rev. Cancer 2010, 10 (12) 878-89
    • (2010) Nat. Rev. Cancer , vol.10 , Issue.12 , pp. 878-889
    • Moore, P.S.1    Chang, Y.2
  • 15
    • 84863992056 scopus 로고    scopus 로고
    • Cancer and viruses: A double-edged sword
    • Butt, A. Q.; Miggin, S. M. Cancer and viruses: A double-edged sword Proteomics 2012, 12 (13) 2127-38
    • (2012) Proteomics , vol.12 , Issue.13 , pp. 2127-2138
    • Butt, A.Q.1    Miggin, S.M.2
  • 16
    • 0036559896 scopus 로고    scopus 로고
    • Papillomaviruses and cancer: From basic studies to clinical application
    • zur Hausen, H. Papillomaviruses and cancer: from basic studies to clinical application Nat. Rev. Cancer 2002, 2 (5) 342-50
    • (2002) Nat. Rev. Cancer , vol.2 , Issue.5 , pp. 342-350
    • Zur Hausen, H.1
  • 17
    • 84865682885 scopus 로고    scopus 로고
    • HPV: The global burden
    • Crow, J. M. HPV: The global burden Nature 2012, 488 (7413) S2-3
    • (2012) Nature , vol.488 , Issue.7413 , pp. 2-3
    • Crow, J.M.1
  • 18
    • 72949087815 scopus 로고    scopus 로고
    • Human tumor-associated viruses and new insights into the molecular mechanisms of cancer
    • Martin, D.; Gutkind, J. S. Human tumor-associated viruses and new insights into the molecular mechanisms of cancer Oncogene 2008, 27 (Suppl 2) S31-42
    • (2008) Oncogene , vol.27 , Issue.SUPPL. 2 , pp. 31-42
    • Martin, D.1    Gutkind, J.S.2
  • 20
    • 0033624015 scopus 로고    scopus 로고
    • ThinPrep Pap Test promotes detection of glandular lesions of the endocervix
    • Bai, H.; Sung, C. J.; Steinhoff, M. M. ThinPrep Pap Test promotes detection of glandular lesions of the endocervix Diagn. Cytopathol. 2000, 23 (1) 19-22
    • (2000) Diagn. Cytopathol. , vol.23 , Issue.1 , pp. 19-22
    • Bai, H.1    Sung, C.J.2    Steinhoff, M.M.3
  • 21
    • 23244438005 scopus 로고    scopus 로고
    • The elevated 10-year risk of cervical precancer and cancer in women with human papillomavirus (HPV) type 16 or 18 and the possible utility of type-specific HPV testing in clinical practice
    • Khan, M. J.; Castle, P. E.; Lorincz, A. T.; Wacholder, S.; Sherman, M.; Scott, D. R.; Rush, B. B.; Glass, A. G.; Schiffman, M. The elevated 10-year risk of cervical precancer and cancer in women with human papillomavirus (HPV) type 16 or 18 and the possible utility of type-specific HPV testing in clinical practice JNCI, J. Natl. Cancer Inst. 2005, 97 (14) 1072-9
    • (2005) JNCI, J. Natl. Cancer Inst. , vol.97 , Issue.14 , pp. 1072-1079
    • Khan, M.J.1    Castle, P.E.2    Lorincz, A.T.3    Wacholder, S.4    Sherman, M.5    Scott, D.R.6    Rush, B.B.7    Glass, A.G.8    Schiffman, M.9
  • 22
    • 0037176180 scopus 로고    scopus 로고
    • ThinPrep detection of cervical and endometrial adenocarcinoma: A retrospective cohort study
    • Schorge, J. O.; Hossein Saboorian, M.; Hynan, L.; Ashfaq, R. ThinPrep detection of cervical and endometrial adenocarcinoma: a retrospective cohort study Cancer 2002, 96 (6) 338-43
    • (2002) Cancer , vol.96 , Issue.6 , pp. 338-343
    • Schorge, J.O.1    Hossein Saboorian, M.2    Hynan, L.3    Ashfaq, R.4
  • 23
    • 84862833320 scopus 로고    scopus 로고
    • Liquid-based cytology and human papillomavirus testing to screen for cervical cancer: A systematic review for the U.S. Preventive Services Task Force
    • W214-5
    • Whitlock, E. P.; Vesco, K. K.; Eder, M.; Lin, J. S.; Senger, C. A.; Burda, B. U. Liquid-based cytology and human papillomavirus testing to screen for cervical cancer: a systematic review for the U.S. Preventive Services Task Force Ann. Intern. Med. 2011, 155 (10) 687-97; W214-5
    • (2011) Ann. Intern. Med. , vol.155 , Issue.10 , pp. 687-697
    • Whitlock, E.P.1    Vesco, K.K.2    Eder, M.3    Lin, J.S.4    Senger, C.A.5    Burda, B.U.6
  • 24
    • 0037243946 scopus 로고    scopus 로고
    • Human papillomavirus and cervical cancer
    • Burd, E. M. Human papillomavirus and cervical cancer Clin. Microbiol. Rev. 2003, 16 (1) 1-17
    • (2003) Clin. Microbiol. Rev. , vol.16 , Issue.1 , pp. 1-17
    • Burd, E.M.1
  • 26
    • 0036895804 scopus 로고    scopus 로고
    • Changes in cervical keratinocyte gene expression associated with integration of human papillomavirus 16
    • Alazawi, W.; Pett, M.; Arch, B.; Scott, L.; Freeman, T.; Stanley, M. A.; Coleman, N. Changes in cervical keratinocyte gene expression associated with integration of human papillomavirus 16 Cancer Res. 2002, 62 (23) 6959-65
    • (2002) Cancer Res. , vol.62 , Issue.23 , pp. 6959-6965
    • Alazawi, W.1    Pett, M.2    Arch, B.3    Scott, L.4    Freeman, T.5    Stanley, M.A.6    Coleman, N.7
  • 28
    • 36349017302 scopus 로고    scopus 로고
    • Proteomic analysis of high-grade dysplastic cervical cells obtained from ThinPrep slides using laser capture microdissection and mass spectrometry
    • Gu, Y.; Wu, S. L.; Meyer, J. L.; Hancock, W. S.; Burg, L. J.; Linder, J.; Hanlon, D. W.; Karger, B. L. Proteomic analysis of high-grade dysplastic cervical cells obtained from ThinPrep slides using laser capture microdissection and mass spectrometry J. Proteome Res. 2007, 6 (11) 4256-68
    • (2007) J. Proteome Res. , vol.6 , Issue.11 , pp. 4256-4268
    • Gu, Y.1    Wu, S.L.2    Meyer, J.L.3    Hancock, W.S.4    Burg, L.J.5    Linder, J.6    Hanlon, D.W.7    Karger, B.L.8
  • 29
    • 79952279293 scopus 로고    scopus 로고
    • Simultaneous analysis of relative protein expression levels across multiple samples using iTRAQ isobaric tags with 2D nano LC-MS/MS
    • Unwin, R. D.; Griffiths, J. R.; Whetton, A. D. Simultaneous analysis of relative protein expression levels across multiple samples using iTRAQ isobaric tags with 2D nano LC-MS/MS Nat. Protoc. 2010, 5 (9) 1574-82
    • (2010) Nat. Protoc. , vol.5 , Issue.9 , pp. 1574-1582
    • Unwin, R.D.1    Griffiths, J.R.2    Whetton, A.D.3
  • 30
    • 79958118891 scopus 로고    scopus 로고
    • The role of statistical power analysis in quantitative proteomics
    • Levin, Y. The role of statistical power analysis in quantitative proteomics Proteomics 2011, 11 (12) 2565-7
    • (2011) Proteomics , vol.11 , Issue.12 , pp. 2565-2567
    • Levin, Y.1
  • 33
    • 0034750305 scopus 로고    scopus 로고
    • Current methods of testing for human papillomavirus. Best practice & research
    • Davies, P.; Kornegay, J.; Iftner, T. Current methods of testing for human papillomavirus. Best practice & research Clin. Obstet. Gynecol. 2001, 15 (5) 677-700
    • (2001) Clin. Obstet. Gynecol. , vol.15 , Issue.5 , pp. 677-700
    • Davies, P.1    Kornegay, J.2    Iftner, T.3
  • 35
    • 26444539668 scopus 로고    scopus 로고
    • Orthogonality of separation in two-dimensional liquid chromatography
    • Gilar, M.; Olivova, P.; Daly, A. E.; Gebler, J. C. Orthogonality of separation in two-dimensional liquid chromatography Anal. Chem. 2005, 77 (19) 6426-34
    • (2005) Anal. Chem. , vol.77 , Issue.19 , pp. 6426-6434
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 36
    • 79959980810 scopus 로고    scopus 로고
    • Preview: A program for surveying shotgun proteomics tandem mass spectrometry data
    • Kil, Y. J.; Becker, C.; Sandoval, W.; Goldberg, D.; Bern, M. Preview: a program for surveying shotgun proteomics tandem mass spectrometry data Anal. Chem. 2011, 83 (13) 5259-67
    • (2011) Anal. Chem. , vol.83 , Issue.13 , pp. 5259-5267
    • Kil, Y.J.1    Becker, C.2    Sandoval, W.3    Goldberg, D.4    Bern, M.5
  • 37
    • 64749108158 scopus 로고    scopus 로고
    • Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
    • Boersema, P. J.; Raijmakers, R.; Lemeer, S.; Mohammed, S.; Heck, A. J. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics Nat. Protoc. 2009, 4 (4) 484-94
    • (2009) Nat. Protoc. , vol.4 , Issue.4 , pp. 484-494
    • Boersema, P.J.1    Raijmakers, R.2    Lemeer, S.3    Mohammed, S.4    Heck, A.J.5
  • 38
    • 84858076270 scopus 로고    scopus 로고
    • Effects of human papillomavirus (HPV) type 16 oncoproteins on the expression of involucrin in human keratinocytes
    • Gyongyosi, E.; Szalmas, A.; Ferenczi, A.; Konya, J.; Gergely, L.; Veress, G. Effects of human papillomavirus (HPV) type 16 oncoproteins on the expression of involucrin in human keratinocytes Virol. J. 2012, 9, 36
    • (2012) Virol. J. , vol.9 , pp. 36
    • Gyongyosi, E.1    Szalmas, A.2    Ferenczi, A.3    Konya, J.4    Gergely, L.5    Veress, G.6
  • 39
    • 2942618208 scopus 로고    scopus 로고
    • Pathogenesis of human papillomaviruses in differentiating epithelia
    • Longworth, M. S.; Laimins, L. A. Pathogenesis of human papillomaviruses in differentiating epithelia Microbiol. Mol. Biol. Rev. 2004, 68 (2) 362-72
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , Issue.2 , pp. 362-372
    • Longworth, M.S.1    Laimins, L.A.2
  • 40
    • 0036120669 scopus 로고    scopus 로고
    • Immunoregulatory functions of interleukin 18 and its role in defense against bacterial pathogens
    • Biet, F.; Locht, C.; Kremer, L. Immunoregulatory functions of interleukin 18 and its role in defense against bacterial pathogens J. Mol. Med. 2002, 80 (3) 147-62
    • (2002) J. Mol. Med. , vol.80 , Issue.3 , pp. 147-162
    • Biet, F.1    Locht, C.2    Kremer, L.3
  • 42
    • 73449084767 scopus 로고    scopus 로고
    • Immunosuppressive cytokine Interleukin-10 (IL-10) is up-regulated in high-grade CIN but not associated with high-risk human papillomavirus (HPV) at baseline, outcomes of HR-HPV infections or incident CIN in the LAMS cohort
    • Syrjanen, S.; Naud, P.; Sarian, L.; Derchain, S.; Roteli-Martins, C.; Longatto-Filho, A.; Tatti, S.; Branca, M.; Erzen, M.; Hammes, L. S.; Costa, S.; Syrjanen, K. Immunosuppressive cytokine Interleukin-10 (IL-10) is up-regulated in high-grade CIN but not associated with high-risk human papillomavirus (HPV) at baseline, outcomes of HR-HPV infections or incident CIN in the LAMS cohort Virchows Arch. 2009, 455 (6) 505-15
    • (2009) Virchows Arch. , vol.455 , Issue.6 , pp. 505-515
    • Syrjanen, S.1    Naud, P.2    Sarian, L.3    Derchain, S.4    Roteli-Martins, C.5    Longatto-Filho, A.6    Tatti, S.7    Branca, M.8    Erzen, M.9    Hammes, L.S.10    Costa, S.11    Syrjanen, K.12
  • 43
    • 34547172207 scopus 로고    scopus 로고
    • Proteomic analysis of human cervico-vaginal fluid
    • Shaw, J. L.; Smith, C. R.; Diamandis, E. P. Proteomic analysis of human cervico-vaginal fluid J. Proteome Res. 2007, 6 (7) 2859-65
    • (2007) J. Proteome Res. , vol.6 , Issue.7 , pp. 2859-2865
    • Shaw, J.L.1    Smith, C.R.2    Diamandis, E.P.3
  • 45
    • 19344371357 scopus 로고    scopus 로고
    • Human tissue kallikrein gene family: Applications in cancer
    • Obiezu, C. V.; Diamandis, E. P. Human tissue kallikrein gene family: applications in cancer Cancer Lett. 2005, 224 (1) 1-22
    • (2005) Cancer Lett. , vol.224 , Issue.1 , pp. 1-22
    • Obiezu, C.V.1    Diamandis, E.P.2
  • 47
    • 0034715522 scopus 로고    scopus 로고
    • Differential phosphorylation of the HPV-16 E7 oncoprotein during the cell cycle
    • Massimi, P.; Banks, L. Differential phosphorylation of the HPV-16 E7 oncoprotein during the cell cycle Virology 2000, 276 (2) 388-94
    • (2000) Virology , vol.276 , Issue.2 , pp. 388-394
    • Massimi, P.1    Banks, L.2
  • 48
    • 0035670342 scopus 로고    scopus 로고
    • Regulation of the human papillomavirus oncoproteins by differential phosphorylation
    • Massimi, P.; Pim, D.; Kuhne, C.; Banks, L. Regulation of the human papillomavirus oncoproteins by differential phosphorylation Mol. Cell. Biochem. 2001, 227 (1-2) 137-44
    • (2001) Mol. Cell. Biochem. , vol.227 , Issue.12 , pp. 137-144
    • Massimi, P.1    Pim, D.2    Kuhne, C.3    Banks, L.4
  • 49
    • 0024591788 scopus 로고
    • Phosphorylation of the human papillomavirus type 1 E4 proteins in vivo and in vitro
    • Grand, R. J.; Doorbar, J.; Smith, K. J.; Coneron, I.; Gallimore, P. H. Phosphorylation of the human papillomavirus type 1 E4 proteins in vivo and in vitro Virology 1989, 170 (1) 201-13
    • (1989) Virology , vol.170 , Issue.1 , pp. 201-213
    • Grand, R.J.1    Doorbar, J.2    Smith, K.J.3    Coneron, I.4    Gallimore, P.H.5
  • 50
    • 84855932755 scopus 로고    scopus 로고
    • Advances in quantitative phosphoproteomics
    • Nilsson, C. L. Advances in quantitative phosphoproteomics Anal. Chem. 2012, 84 (2) 735-46
    • (2012) Anal. Chem. , vol.84 , Issue.2 , pp. 735-746
    • Nilsson, C.L.1
  • 51
    • 84870848593 scopus 로고    scopus 로고
    • De novo derivation of proteomes from transcriptomes for transcript and protein identification
    • Evans, V. C.; Barker, G.; Heesom, K. J.; Fan, J.; Bessant, C.; Matthews, D. A. De novo derivation of proteomes from transcriptomes for transcript and protein identification Nat. Methods 2012, 9 (12) 1207-11
    • (2012) Nat. Methods , vol.9 , Issue.12 , pp. 1207-1211
    • Evans, V.C.1    Barker, G.2    Heesom, K.J.3    Fan, J.4    Bessant, C.5    Matthews, D.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.